Clone Sequence Records
BS16909.3prime Sequence
894 bp (839 high quality bases) assembled on 2007-05-15
> BS16909.3prime
ATGGTCTAGAAAGCTTTTACTCGCCCTCGGGCCATGTGAACTGCCCACCG
GTGGGTTCCGTCCTTAGCCAGTAGCATTGATCGATGACCTGGAATCCCAG
TTTGCTGAACATCTCCGATGACGGCTTATTCGAGGGGCCCACGAGAGCCA
TTACATCGTGACCTTGGACGGCTAGGCGGTATGCTATTTCCCTAGTCACC
ACACTGCCAAATCCGCGTCGCTTGTGTGTATCTTTGACTTGCAGGGCGCC
CAAGTAGCCGCCTTGTAACCTAATGCACCAGGCAACTAGTTCCTGGGTGT
CTTCCTGGTACAATCCAACACTGACGCACAGGCGAATCTGCCTTTCTACG
AAGAACAAAGATCCCTCATGATGATTGGGCCACTCTGCGTTAACCAATGG
AGCATCTGCCACACTCAACGACTTTAAAACAAATCCAGATGGAGGTTCGA
CTTTCAGCTTGAGAGCGTCGTTGGCTTTCATAAAAAACAAATTCGTGCAG
TCCCTGTACACCAGATTCAACTTTTTGGACTCCACCAGACTATCCAGGGC
ACCAATGTGTCTGGAGGGTATAGAACTGCATTTCAAACCCGACGACCAGT
CCAGTAAATCCAGAGCTTTTCCAACAAGGCCGTTCGTGTTGTTCAAGCAA
CCTACGAATAGTTGATAGCGATCCACTATAACAAAAAGACCTTCATCTCT
GGCTTGTTTTGCATCCAATGTGTACATCTTAATATTCCTCATATGGGGCT
GTTTTTTCAGAAATTCCACAAAGTTATCAAGGCAGTAGTATTCCTGGCAA
TATTTTGGCCAGTTTTGCTTGTAGAGCTGTTGGAACTCCTGGATATCTTT
CAGCCCCATAACTTCTAATCGAGTACCCATGTCGACTGATAACT
BS16909.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:35:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5783-PA | 864 | CG5783-RA | 1..864 | 880..17 | 4295 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:31:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5783-RA | 953 | CG5783-RA | 35..898 | 880..17 | 4305 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:31:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18156852..18157107 | 272..17 | 1280 | 100 | Minus |
2L | 23513712 | 2L | 18156341..18156568 | 674..447 | 1140 | 100 | Minus |
2L | 23513712 | 2L | 18156077..18156284 | 880..673 | 1025 | 99.5 | Minus |
2L | 23513712 | 2L | 18156625..18156803 | 446..268 | 895 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:31:41 has no hits.
BS16909.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:36:00 Download gff for
BS16909.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5783-PA | 1..864 | 17..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:50:32 Download gff for
BS16909.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5783-RA | 35..898 | 17..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:47:32 Download gff for
BS16909.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5783-RA | 35..898 | 17..880 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:47:32 Download gff for
BS16909.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18156077..18156283 | 674..880 | 99 | -> | Minus |
2L | 18156342..18156568 | 447..673 | 100 | -> | Minus |
2L | 18156625..18156801 | 270..446 | 100 | -> | Minus |
2L | 18156855..18157110 | 14..269 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:50:32 Download gff for
BS16909.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18156077..18156283 | 674..880 | 99 | -> | Minus |
arm_2L | 18156342..18156568 | 447..673 | 100 | -> | Minus |
arm_2L | 18156625..18156801 | 270..446 | 100 | -> | Minus |
arm_2L | 18156855..18157110 | 14..269 | 99 | -> | Minus |
BS16909.5prime Sequence
876 bp (790 high quality bases) assembled on 2007-05-15
> BS16909.5prime
GAAGTTATCAGTCGACATGGGTACTCGATTAGAAGTTATTGGGCTGAAAG
ATATCCAGGAGTTCCAACAGCTCTACAAGCAAAACTGGCCAAAATATTGC
CAGGAATACTACTGCCTTGATAACTTTGTGGAATTTCTGAAAAAACAGCC
CCATATGAGGAATATTAAGATGTACACATTGGATGCAAAACAAGCCAGAG
ATGAAGGTCTTTTTGTTATAGTGGATCGCTATCAACTATTCGTAGGTTGC
TTGAACAACACGAACGGCCTTGTTGGAAAAGCTCTGGATTTACTGGACTG
GTCGTCGGGTTTGAAATGCAGTTCTATACCCTCCAGACACATTGGTGCCC
TGGATAGTCTGGTGGAGTCCAAAAAGTTGAATCTGGTGTACAGGGACTGC
ACGAATTTGTTTTTTATGAAAGCCAACGACGCTCTCAAGCTGAAAGTCGA
ACCTCCATCTGGATTTGTTTTAAAGTCGTTGAGTGTGGCAGATGCTCCAT
TGGTTAACGCAGAGTGGCCCAATCATCATGAGGGATCTTTGTTCTTCGTA
GAAAGGCAGATTCGCCTGTGCGTCAGTGTTGGATTGTACCAGGAAGACAC
CCAGGAACTAGTTGCCTGGTGCATTAGGTTACAAGGCGGCTACTTGGGCG
CCCTGCAAGTCAAAGATACACACAAGCGACGCGGATTTGGCAGTGTGGTG
ACTAGGGAAATAGCATACCGCCTAGCCGTCCAAGGTCACGATGTAATGGC
TCTCGTGGGCCCCTCGAATAAGCCGTCATCGGAGATGTTCAGCAAACTGG
GATTCCAGGTCATCGATCAATGCTACTGGCTAAGGACGGAACCCACCGGT
GGGCAGTTCACATGGCCCGAGGGCGA
BS16909.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:30:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5783-PA | 864 | CG5783-RA | 1..860 | 17..876 | 4300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5783-RA | 953 | CG5783-RA | 35..894 | 17..876 | 4300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:47:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18156852..18157103 | 625..876 | 1260 | 100 | Plus |
2L | 23513712 | 2L | 18156341..18156568 | 223..450 | 1140 | 100 | Plus |
2L | 23513712 | 2L | 18156077..18156284 | 17..224 | 1040 | 100 | Plus |
2L | 23513712 | 2L | 18156625..18156803 | 451..629 | 895 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:47:05 has no hits.
BS16909.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:30:03 Download gff for
BS16909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5783-PA | 1..859 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:48:56 Download gff for
BS16909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5783-RA | 35..893 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:23:53 Download gff for
BS16909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5783-RA | 35..893 | 17..875 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:23:53 Download gff for
BS16909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18156855..18157102 | 628..875 | 100 | | Plus |
2L | 18156077..18156283 | 17..223 | 100 | -> | Plus |
2L | 18156342..18156568 | 224..450 | 100 | -> | Plus |
2L | 18156625..18156801 | 451..627 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:48:56 Download gff for
BS16909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18156077..18156283 | 17..223 | 100 | -> | Plus |
arm_2L | 18156342..18156568 | 224..450 | 100 | -> | Plus |
arm_2L | 18156625..18156801 | 451..627 | 100 | -> | Plus |
arm_2L | 18156855..18157102 | 628..875 | 100 | | Plus |
BS16909.complete Sequence
896 bp assembled on 2007-05-07
GenBank Submission: FJ638208
> BS16909.complete
GAAGTTATCAGTCGACATGGGTACTCGATTAGAAGTTATTGGGCTGAAAG
ATATCCAGGAGTTCCAACAGCTCTACAAGCAAAACTGGCCAAAATATTGC
CAGGAATACTACTGCCTTGATAACTTTGTGGAATTTCTGAAAAAACAGCC
CCATATGAGGAATATTAAGATGTACACATTGGATGCAAAACAAGCCAGAG
ATGAAGGTCTTTTTGTTATAGTGGATCGCTATCAACTATTCGTAGGTTGC
TTGAACAACACGAACGGCCTTGTTGGAAAAGCTCTGGATTTACTGGACTG
GTCGTCGGGTTTGAAATGCAGTTCTATACCCTCCAGACACATTGGTGCCC
TGGATAGTCTGGTGGAGTCCAAAAAGTTGAATCTGGTGTACAGGGACTGC
ACGAATTTGTTTTTTATGAAAGCCAACGACGCTCTCAAGCTGAAAGTCGA
ACCTCCATCTGGATTTGTTTTAAAGTCGTTGAGTGTGGCAGATGCTCCAT
TGGTTAACGCAGAGTGGCCCAATCATCATGAGGGATCTTTGTTCTTCGTA
GAAAGGCAGATTCGCCTGTGCGTCAGTGTTGGATTGTACCAGGAAGACAC
CCAGGAACTAGTTGCCTGGTGCATTAGGTTACAAGGCGGCTACTTGGGCG
CCCTGCAAGTCAAAGATACACACAAGCGACGCGGATTTGGCAGTGTGGTG
ACTAGGGAAATAGCATACCGCCTAGCCGTCCAAGGTCACGATGTAATGGC
TCTCGTGGGCCCCTCGAATAAGCCGTCATCGGAGATGTTCAGCAAACTGG
GATTCCAGGTCATCGATCAATGCTACTGGCTAAGGACGGAACCCACCGGT
GGGCAGTTCACATGGCCCGAGGGCGAGTAAAAGCTTTCTAGACCAT
BS16909.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5783-RA | 864 | CG5783-PA | 1..864 | 17..880 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5783-RA | 953 | CG5783-RA | 35..898 | 17..880 | 4320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18156852..18157107 | 625..880 | 1280 | 100 | Plus |
2L | 23513712 | 2L | 18156341..18156568 | 223..450 | 1140 | 100 | Plus |
2L | 23513712 | 2L | 18156077..18156284 | 17..224 | 1040 | 100 | Plus |
2L | 23513712 | 2L | 18156625..18156803 | 451..629 | 895 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:55:27 has no hits.
BS16909.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:38 Download gff for
BS16909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5783-RA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:40 Download gff for
BS16909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5783-RA | 35..898 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:41 Download gff for
BS16909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5783-RA | 35..896 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:38 Download gff for
BS16909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5783-RA | 35..898 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:11 Download gff for
BS16909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5783-RA | 35..896 | 17..878 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:11 Download gff for
BS16909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18156077..18156283 | 17..223 | 100 | -> | Plus |
2L | 18156342..18156568 | 224..450 | 100 | -> | Plus |
2L | 18156625..18156801 | 451..627 | 100 | -> | Plus |
2L | 18156855..18157105 | 628..878 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:41 Download gff for
BS16909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18156625..18156801 | 451..627 | 100 | -> | Plus |
arm_2L | 18156342..18156568 | 224..450 | 100 | -> | Plus |
arm_2L | 18156077..18156283 | 17..223 | 100 | -> | Plus |
arm_2L | 18156855..18157105 | 628..878 | 100 | | Plus |
BS16909.pep Sequence
Translation from 16 to 879
> BS16909.pep
MGTRLEVIGLKDIQEFQQLYKQNWPKYCQEYYCLDNFVEFLKKQPHMRNI
KMYTLDAKQARDEGLFVIVDRYQLFVGCLNNTNGLVGKALDLLDWSSGLK
CSSIPSRHIGALDSLVESKKLNLVYRDCTNLFFMKANDALKLKVEPPSGF
VLKSLSVADAPLVNAEWPNHHEGSLFFVERQIRLCVSVGLYQEDTQELVA
WCIRLQGGYLGALQVKDTHKRRGFGSVVTREIAYRLAVQGHDVMALVGPS
NKPSSEMFSKLGFQVIDQCYWLRTEPTGGQFTWPEGE*
BS16909.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5783-PA | 287 | CG5783-PA | 1..287 | 1..287 | 1529 | 100 | Plus |
CG17681-PA | 293 | CG17681-PA | 4..290 | 1..284 | 474 | 35.1 | Plus |
CG15155-PA | 258 | CG15155-PA | 3..256 | 4..279 | 467 | 36.2 | Plus |
CG15155-PB | 257 | CG15155-PB | 3..255 | 4..279 | 451 | 35.8 | Plus |
CG12560-PB | 278 | CG12560-PB | 30..276 | 29..271 | 302 | 31.3 | Plus |