Clone BS16909 Report

Search the DGRC for BS16909

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:169
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG5783-RA
Protein status:BS16909.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16909.3prime Sequence

894 bp (839 high quality bases) assembled on 2007-05-15

> BS16909.3prime
ATGGTCTAGAAAGCTTTTACTCGCCCTCGGGCCATGTGAACTGCCCACCG
GTGGGTTCCGTCCTTAGCCAGTAGCATTGATCGATGACCTGGAATCCCAG
TTTGCTGAACATCTCCGATGACGGCTTATTCGAGGGGCCCACGAGAGCCA
TTACATCGTGACCTTGGACGGCTAGGCGGTATGCTATTTCCCTAGTCACC
ACACTGCCAAATCCGCGTCGCTTGTGTGTATCTTTGACTTGCAGGGCGCC
CAAGTAGCCGCCTTGTAACCTAATGCACCAGGCAACTAGTTCCTGGGTGT
CTTCCTGGTACAATCCAACACTGACGCACAGGCGAATCTGCCTTTCTACG
AAGAACAAAGATCCCTCATGATGATTGGGCCACTCTGCGTTAACCAATGG
AGCATCTGCCACACTCAACGACTTTAAAACAAATCCAGATGGAGGTTCGA
CTTTCAGCTTGAGAGCGTCGTTGGCTTTCATAAAAAACAAATTCGTGCAG
TCCCTGTACACCAGATTCAACTTTTTGGACTCCACCAGACTATCCAGGGC
ACCAATGTGTCTGGAGGGTATAGAACTGCATTTCAAACCCGACGACCAGT
CCAGTAAATCCAGAGCTTTTCCAACAAGGCCGTTCGTGTTGTTCAAGCAA
CCTACGAATAGTTGATAGCGATCCACTATAACAAAAAGACCTTCATCTCT
GGCTTGTTTTGCATCCAATGTGTACATCTTAATATTCCTCATATGGGGCT
GTTTTTTCAGAAATTCCACAAAGTTATCAAGGCAGTAGTATTCCTGGCAA
TATTTTGGCCAGTTTTGCTTGTAGAGCTGTTGGAACTCCTGGATATCTTT
CAGCCCCATAACTTCTAATCGAGTACCCATGTCGACTGATAACT

BS16909.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5783-PA 864 CG5783-RA 1..864 880..17 4295 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5783-RA 953 CG5783-RA 35..898 880..17 4305 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18156852..18157107 272..17 1280 100 Minus
2L 23513712 2L 18156341..18156568 674..447 1140 100 Minus
2L 23513712 2L 18156077..18156284 880..673 1025 99.5 Minus
2L 23513712 2L 18156625..18156803 446..268 895 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:31:41 has no hits.

BS16909.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:36:00 Download gff for BS16909.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5783-PA 1..864 17..880 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:50:32 Download gff for BS16909.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5783-RA 35..898 17..880 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:47:32 Download gff for BS16909.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5783-RA 35..898 17..880 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:47:32 Download gff for BS16909.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18156077..18156283 674..880 99 -> Minus
2L 18156342..18156568 447..673 100 -> Minus
2L 18156625..18156801 270..446 100 -> Minus
2L 18156855..18157110 14..269 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:50:32 Download gff for BS16909.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18156077..18156283 674..880 99 -> Minus
arm_2L 18156342..18156568 447..673 100 -> Minus
arm_2L 18156625..18156801 270..446 100 -> Minus
arm_2L 18156855..18157110 14..269 99 -> Minus

BS16909.5prime Sequence

876 bp (790 high quality bases) assembled on 2007-05-15

> BS16909.5prime
GAAGTTATCAGTCGACATGGGTACTCGATTAGAAGTTATTGGGCTGAAAG
ATATCCAGGAGTTCCAACAGCTCTACAAGCAAAACTGGCCAAAATATTGC
CAGGAATACTACTGCCTTGATAACTTTGTGGAATTTCTGAAAAAACAGCC
CCATATGAGGAATATTAAGATGTACACATTGGATGCAAAACAAGCCAGAG
ATGAAGGTCTTTTTGTTATAGTGGATCGCTATCAACTATTCGTAGGTTGC
TTGAACAACACGAACGGCCTTGTTGGAAAAGCTCTGGATTTACTGGACTG
GTCGTCGGGTTTGAAATGCAGTTCTATACCCTCCAGACACATTGGTGCCC
TGGATAGTCTGGTGGAGTCCAAAAAGTTGAATCTGGTGTACAGGGACTGC
ACGAATTTGTTTTTTATGAAAGCCAACGACGCTCTCAAGCTGAAAGTCGA
ACCTCCATCTGGATTTGTTTTAAAGTCGTTGAGTGTGGCAGATGCTCCAT
TGGTTAACGCAGAGTGGCCCAATCATCATGAGGGATCTTTGTTCTTCGTA
GAAAGGCAGATTCGCCTGTGCGTCAGTGTTGGATTGTACCAGGAAGACAC
CCAGGAACTAGTTGCCTGGTGCATTAGGTTACAAGGCGGCTACTTGGGCG
CCCTGCAAGTCAAAGATACACACAAGCGACGCGGATTTGGCAGTGTGGTG
ACTAGGGAAATAGCATACCGCCTAGCCGTCCAAGGTCACGATGTAATGGC
TCTCGTGGGCCCCTCGAATAAGCCGTCATCGGAGATGTTCAGCAAACTGG
GATTCCAGGTCATCGATCAATGCTACTGGCTAAGGACGGAACCCACCGGT
GGGCAGTTCACATGGCCCGAGGGCGA

BS16909.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5783-PA 864 CG5783-RA 1..860 17..876 4300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5783-RA 953 CG5783-RA 35..894 17..876 4300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18156852..18157103 625..876 1260 100 Plus
2L 23513712 2L 18156341..18156568 223..450 1140 100 Plus
2L 23513712 2L 18156077..18156284 17..224 1040 100 Plus
2L 23513712 2L 18156625..18156803 451..629 895 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:47:05 has no hits.

BS16909.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:30:03 Download gff for BS16909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5783-PA 1..859 17..875 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:48:56 Download gff for BS16909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5783-RA 35..893 17..875 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:23:53 Download gff for BS16909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5783-RA 35..893 17..875 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:23:53 Download gff for BS16909.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18156855..18157102 628..875 100   Plus
2L 18156077..18156283 17..223 100 -> Plus
2L 18156342..18156568 224..450 100 -> Plus
2L 18156625..18156801 451..627 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:48:56 Download gff for BS16909.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18156077..18156283 17..223 100 -> Plus
arm_2L 18156342..18156568 224..450 100 -> Plus
arm_2L 18156625..18156801 451..627 100 -> Plus
arm_2L 18156855..18157102 628..875 100   Plus

BS16909.complete Sequence

896 bp assembled on 2007-05-07

GenBank Submission: FJ638208

> BS16909.complete
GAAGTTATCAGTCGACATGGGTACTCGATTAGAAGTTATTGGGCTGAAAG
ATATCCAGGAGTTCCAACAGCTCTACAAGCAAAACTGGCCAAAATATTGC
CAGGAATACTACTGCCTTGATAACTTTGTGGAATTTCTGAAAAAACAGCC
CCATATGAGGAATATTAAGATGTACACATTGGATGCAAAACAAGCCAGAG
ATGAAGGTCTTTTTGTTATAGTGGATCGCTATCAACTATTCGTAGGTTGC
TTGAACAACACGAACGGCCTTGTTGGAAAAGCTCTGGATTTACTGGACTG
GTCGTCGGGTTTGAAATGCAGTTCTATACCCTCCAGACACATTGGTGCCC
TGGATAGTCTGGTGGAGTCCAAAAAGTTGAATCTGGTGTACAGGGACTGC
ACGAATTTGTTTTTTATGAAAGCCAACGACGCTCTCAAGCTGAAAGTCGA
ACCTCCATCTGGATTTGTTTTAAAGTCGTTGAGTGTGGCAGATGCTCCAT
TGGTTAACGCAGAGTGGCCCAATCATCATGAGGGATCTTTGTTCTTCGTA
GAAAGGCAGATTCGCCTGTGCGTCAGTGTTGGATTGTACCAGGAAGACAC
CCAGGAACTAGTTGCCTGGTGCATTAGGTTACAAGGCGGCTACTTGGGCG
CCCTGCAAGTCAAAGATACACACAAGCGACGCGGATTTGGCAGTGTGGTG
ACTAGGGAAATAGCATACCGCCTAGCCGTCCAAGGTCACGATGTAATGGC
TCTCGTGGGCCCCTCGAATAAGCCGTCATCGGAGATGTTCAGCAAACTGG
GATTCCAGGTCATCGATCAATGCTACTGGCTAAGGACGGAACCCACCGGT
GGGCAGTTCACATGGCCCGAGGGCGAGTAAAAGCTTTCTAGACCAT

BS16909.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5783-RA 864 CG5783-PA 1..864 17..880 4320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5783-RA 953 CG5783-RA 35..898 17..880 4320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18156852..18157107 625..880 1280 100 Plus
2L 23513712 2L 18156341..18156568 223..450 1140 100 Plus
2L 23513712 2L 18156077..18156284 17..224 1040 100 Plus
2L 23513712 2L 18156625..18156803 451..629 895 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:55:27 has no hits.

BS16909.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:38 Download gff for BS16909.complete
Subject Subject Range Query Range Percent Splice Strand
CG5783-RA 1..864 17..880 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:40 Download gff for BS16909.complete
Subject Subject Range Query Range Percent Splice Strand
CG5783-RA 35..898 17..880 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:41 Download gff for BS16909.complete
Subject Subject Range Query Range Percent Splice Strand
CG5783-RA 35..896 17..878 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:38 Download gff for BS16909.complete
Subject Subject Range Query Range Percent Splice Strand
CG5783-RA 35..898 17..880 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:11 Download gff for BS16909.complete
Subject Subject Range Query Range Percent Splice Strand
CG5783-RA 35..896 17..878 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:11 Download gff for BS16909.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18156077..18156283 17..223 100 -> Plus
2L 18156342..18156568 224..450 100 -> Plus
2L 18156625..18156801 451..627 100 -> Plus
2L 18156855..18157105 628..878 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:41 Download gff for BS16909.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18156625..18156801 451..627 100 -> Plus
arm_2L 18156342..18156568 224..450 100 -> Plus
arm_2L 18156077..18156283 17..223 100 -> Plus
arm_2L 18156855..18157105 628..878 100   Plus

BS16909.pep Sequence

Translation from 16 to 879

> BS16909.pep
MGTRLEVIGLKDIQEFQQLYKQNWPKYCQEYYCLDNFVEFLKKQPHMRNI
KMYTLDAKQARDEGLFVIVDRYQLFVGCLNNTNGLVGKALDLLDWSSGLK
CSSIPSRHIGALDSLVESKKLNLVYRDCTNLFFMKANDALKLKVEPPSGF
VLKSLSVADAPLVNAEWPNHHEGSLFFVERQIRLCVSVGLYQEDTQELVA
WCIRLQGGYLGALQVKDTHKRRGFGSVVTREIAYRLAVQGHDVMALVGPS
NKPSSEMFSKLGFQVIDQCYWLRTEPTGGQFTWPEGE*

BS16909.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5783-PA 287 CG5783-PA 1..287 1..287 1529 100 Plus
CG17681-PA 293 CG17681-PA 4..290 1..284 474 35.1 Plus
CG15155-PA 258 CG15155-PA 3..256 4..279 467 36.2 Plus
CG15155-PB 257 CG15155-PB 3..255 4..279 451 35.8 Plus
CG12560-PB 278 CG12560-PB 30..276 29..271 302 31.3 Plus