Clone Sequence Records
BS16912.3prime Sequence
856 bp (815 high quality bases) assembled on 2007-05-15
> BS16912.3prime
ATGGTCTAGAAAGCTTTTAGGCGCTGGTCAATGCAGCCACGCCTGGCAGT
GTCTTGCCCTCCAGGAGCTCCAGCGAAGCGCCGCCTCCGGTGGAGACGTG
CGAGACGAGTGCCTCCGTGTTCCACTTGGCGCAGCAAGAGGCAGTGTCGC
CGCCGCCGATGATGGAGACGGTGCCGTTCTTGGTGGCGGCCACCACGCCG
TCCATGATGGACTTGGTGCCGTTGGCGAAGTTGGGGAACTCAAAGACACC
GGGGGGTCCGTTCCACACGATGAGCTTGGCGCGTGCGATGGGTGCCGCGA
AGAGCTCACGGGTCTTGGGACCCACATCCAGACCCATGTGTCCATCGGGA
ATTCCGGCCTCCACGGTGGCCTCGCTGACGGCAGCGTTCTCGGCGAACTT
GTCGCCGCAGACAAAGTCCACTGGCAGATGCAACTGCACGTTATTCTTCT
TGGCCTTCTCCACCAGTTTCTCGACGATCTTGGAGCCCTCCTCGTCGAAC
AGGGAACCGCCGATCTTCATGTTGTTGAGGACCTTCAGGAAGGTGAAGGC
CATGCCGCCACCGATGATCATCTCGTTGACCTTGTCCAGAAGGTTCTCAA
TCAGCTGGATCTTGTCGGCCACCTTGGCGCCACCGAGAATTGCCAGGAAG
GGATTTGGTGGCTTGTCCAGGGCCTGCGAGAAGTACTTCAGCTCCTTGTT
CAGCAACAGACCAGCTGCGCGCTGCTCGAAGCCATCGCCCATCATGGAAC
TGTGGGCGCGATGGGCAGTGCCGAAGGCGTCGTTGACATAGACATCGCCC
AGCTTGGCCAGGCTGGCACGGAACTCCTTGACCTTGGCAGGATCGGCCTT
TGACTT
BS16912.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:39:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3127-PA | 1248 | Pgk-RA | 415..1248 | 850..17 | 4170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:08:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgk-RE | 1893 | CG3127-RE | 928..1761 | 850..17 | 4170 | 100 | Minus |
| Pgk-RD | 1865 | CG3127-RD | 900..1733 | 850..17 | 4170 | 100 | Minus |
| Pgk-RC | 1867 | CG3127-RC | 902..1735 | 850..17 | 4170 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:08:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2747311..2747903 | 258..850 | 2965 | 100 | Plus |
| 2L | 23513712 | 2L | 2747012..2747253 | 17..258 | 1210 | 100 | Plus |
| 2L | 23513712 | 2L | 2743926..2744288 | 482..844 | 450 | 74.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:08:20 has no hits.
BS16912.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:39:31 Download gff for
BS16912.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3127-PA | 409..1248 | 17..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:50:13 Download gff for
BS16912.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgk-RC | 896..1737 | 13..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:08:14 Download gff for
BS16912.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgk-RC | 896..1737 | 13..856 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:08:14 Download gff for
BS16912.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2747010..2747252 | 13..257 | 99 | <- | Plus |
| 2L | 2747311..2747908 | 258..856 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:50:13 Download gff for
BS16912.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2747010..2747252 | 13..257 | 99 | <- | Plus |
| arm_2L | 2747311..2747908 | 258..856 | 99 | | Plus |
BS16912.5prime Sequence
920 bp (744 high quality bases) assembled on 2007-05-15
> BS16912.5prime
GAAGTTATCAGTCGACATGGCCTTCAATAAGCTGAGCATCGAAAACCTGG
ACTTGGCGGGCAAGCGGGTGTTGATGCGCGTCGACTTCAATGTGCCCATC
AAGGAGGGCAAGATCACCAGCAACCAGAGAATTGTCGCTGCCTTGGATAG
TATCAAGTTGGCCCTTTCCAAGAAAGCCAAGTCGGTGGTGCTGATGTCCC
ACTTGGGTCGTCCCGATGGCAACAAGAACATCAAGTACACCCTGGCACCC
GTGGCCGCTGAGCTGAAGACCCTGCTTGGCCAGGATGTGATCTTCCTAAG
TGACTGCGTCGGCAGCGAAGTGGAGGCCGCTTGCAAGGATCCCGCACCGG
GATCCGTCATTCTGCTGGAGAACGTCCGCTTCTACGTGGAGGAGGAGGGC
AAGGGCTTGGATGCCAGCGGCGGCAAGGTCAAGGCCGATCCTGCCAAGGT
CAAGGAGTTCCGTGCCAGCCTGGCCAAGCTGGGCGATGTCTATGTCAACG
ACGCCTTCGGCACTGCCCATCGCGCCCACAGTTCCATGATGGGCGATGGC
TTCGAGCAGCGCGCAGCTGGTCTGTTGCTGAACAAGGAGCTGAAGTACTT
CTCGCAGGCCCTGGACAAGCCACCAAATCCCTTCCTGGCAATTCTCGGTG
GCGCCAAGGTGGCCGACAAGATCCAGCTGATTGAGAACCTTCTGGACAAG
GTCAACGAGATGATCATCGGTGGCGGCATGGCCTTCACCTTCCTGAAGGT
CCTCAACAACATGAAGATCGGCGGTTCCCTGTTCGACGAGGAGGGCTCCA
AGATCGTCGAGAAACTGGTGGAGAAGGCCAAGAAGAATAACGTGCAGTTG
CATCTGCCAGTGGACTTTGTCTGCGGCGACAAGTTCGCCGAGAACGCTGC
CGTCAGCGAGGGCACCGTGG
BS16912.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:33:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3127-PA | 1248 | Pgk-RA | 1..904 | 17..920 | 4495 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:14:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgk-RE | 1893 | CG3127-RE | 514..1417 | 17..920 | 4505 | 99.9 | Plus |
| Pgk-RD | 1865 | CG3127-RD | 486..1389 | 17..920 | 4505 | 99.9 | Plus |
| Pgk-RC | 1867 | CG3127-RC | 488..1391 | 17..920 | 4505 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:13:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2747414..2748256 | 920..78 | 4200 | 99.9 | Minus |
| 2L | 23513712 | 2L | 2743926..2744300 | 799..425 | 480 | 75.2 | Minus |
| 2L | 23513712 | 2L | 2748320..2748381 | 78..17 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:13:58 has no hits.
BS16912.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:33:02 Download gff for
BS16912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3127-PA | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:50:16 Download gff for
BS16912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgk-RC | 488..1391 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:54:30 Download gff for
BS16912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgk-RC | 488..1391 | 17..920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:54:30 Download gff for
BS16912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2747414..2748255 | 79..920 | 99 | <- | Minus |
| 2L | 2748320..2748381 | 17..78 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:50:16 Download gff for
BS16912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2747414..2748255 | 79..920 | 99 | <- | Minus |
| arm_2L | 2748320..2748381 | 17..78 | 100 | | Minus |
BS16912.complete Sequence
1280 bp assembled on 2007-05-07
GenBank Submission: FJ638209
> BS16912.complete
GAAGTTATCAGTCGACATGGCCTTCAATAAGCTGAGCATCGAAAACCTGG
ACTTGGCGGGCAAGCGGGTGTTGATGCGCGTCGACTTCAATGTGCCCATC
AAGGAGGGCAAGATCACCAGCAACCAGAGAATTGTCGCTGCCTTGGATAG
TATCAAGTTGGCCCTTTCCAAGAAAGCCAAGTCGGTGGTGCTGATGTCCC
ACTTGGGTCGTCCCGATGGCAACAAGAACATCAAGTACACCCTGGCACCC
GTGGCCGCTGAGCTGAAGACCCTGCTTGGCCAGGATGTGATCTTCCTAAG
TGACTGCGTCGGCAGCGAAGTGGAGGCCGCTTGCAAGGATCCCGCACCGG
GATCCGTCATTCTGCTGGAGAACGTCCGCTTCTACGTGGAGGAGGAGGGC
AAGGGCTTGGATGCCAGCGGCGGCAAGGTCAAGGCCGATCCTGCCAAGGT
CAAGGAGTTCCGTGCCAGCCTGGCCAAGCTGGGCGATGTCTATGTCAACG
ACGCCTTCGGCACTGCCCATCGCGCCCACAGTTCCATGATGGGCGATGGC
TTCGAGCAGCGCGCAGCTGGTCTGTTGCTGAACAAGGAGCTGAAGTACTT
CTCGCAGGCCCTGGACAAGCCACCAAATCCCTTCCTGGCAATTCTCGGTG
GCGCCAAGGTGGCCGACAAGATCCAGCTGATTGAGAACCTTCTGGACAAG
GTCAACGAGATGATCATCGGTGGCGGCATGGCCTTCACCTTCCTGAAGGT
CCTCAACAACATGAAGATCGGCGGTTCCCTGTTCGACGAGGAGGGCTCCA
AGATCGTCGAGAAACTGGTGGAGAAGGCCAAGAAGAATAACGTGCAGTTG
CATCTGCCAGTGGACTTTGTCTGCGGCGACAAGTTCGCCGAGAACGCTGC
CGTCAGCGAGGCCACCGTGGAGGCCGGAATTCCCGATGGACACATGGGTC
TGGATGTGGGTCCCAAGACCCGTGAGCTCTTCGCGGCACCCATCGCACGC
GCCAAGCTCATCGTGTGGAACGGACCCCCCGGTGTCTTTGAGTTCCCCAA
CTTCGCCAACGGCACCAAGTCCATCATGGACGGCGTGGTGGCCGCCACCA
AGAACGGCACCGTCTCCATCATCGGCGGCGGCGACACTGCCTCTTGCTGC
GCCAAGTGGAACACGGAGGCACTCGTCTCGCACGTCTCCACCGGAGGCGG
CGCTTCGCTGGAGCTCCTGGAGGGCAAGACACTGCCAGGCGTGGCTGCAT
TGACCAGCGCCTAAAAGCTTTCTAGACCAT
BS16912.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:35:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgk-RE | 1248 | CG3127-PE | 1..1248 | 17..1264 | 6240 | 100 | Plus |
| Pgk-RD | 1248 | CG3127-PD | 1..1248 | 17..1264 | 6240 | 100 | Plus |
| Pgk-RC | 1248 | CG3127-PC | 1..1248 | 17..1264 | 6240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:35:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgk-RE | 1893 | CG3127-RE | 514..1761 | 17..1264 | 6240 | 100 | Plus |
| Pgk-RD | 1865 | CG3127-RD | 486..1733 | 17..1264 | 6240 | 100 | Plus |
| Pgk-RC | 1867 | CG3127-RC | 488..1735 | 17..1264 | 6240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2747311..2748256 | 1023..78 | 4730 | 100 | Minus |
| 2L | 23513712 | 2L | 2747012..2747253 | 1264..1023 | 1210 | 100 | Minus |
| 2L | 23513712 | 2L | 2743926..2744300 | 799..425 | 480 | 75.2 | Minus |
| 2L | 23513712 | 2L | 2748320..2748381 | 78..17 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:35:07 has no hits.
BS16912.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:39 Download gff for
BS16912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgk-RA | 1..1248 | 17..1264 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:42 Download gff for
BS16912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgk-RA | 142..1391 | 17..1268 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:36 Download gff for
BS16912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgk-RC | 488..1733 | 17..1262 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:39 Download gff for
BS16912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgk-RA | 142..1391 | 17..1268 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:54 Download gff for
BS16912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgk-RC | 488..1733 | 17..1262 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:54 Download gff for
BS16912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2748320..2748381 | 17..78 | 100 | | Minus |
| 2L | 2747014..2747252 | 1024..1262 | 100 | <- | Minus |
| 2L | 2747311..2748255 | 79..1023 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:36 Download gff for
BS16912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2747014..2747252 | 1024..1262 | 100 | <- | Minus |
| arm_2L | 2747311..2748255 | 79..1023 | 100 | <- | Minus |
| arm_2L | 2748320..2748381 | 17..78 | 100 | | Minus |
BS16912.pep Sequence
Translation from 16 to 1263
> BS16912.pep
MAFNKLSIENLDLAGKRVLMRVDFNVPIKEGKITSNQRIVAALDSIKLAL
SKKAKSVVLMSHLGRPDGNKNIKYTLAPVAAELKTLLGQDVIFLSDCVGS
EVEAACKDPAPGSVILLENVRFYVEEEGKGLDASGGKVKADPAKVKEFRA
SLAKLGDVYVNDAFGTAHRAHSSMMGDGFEQRAAGLLLNKELKYFSQALD
KPPNPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMAFTFLKVLNNMK
IGGSLFDEEGSKIVEKLVEKAKKNNVQLHLPVDFVCGDKFAENAAVSEAT
VEAGIPDGHMGLDVGPKTRELFAAPIARAKLIVWNGPPGVFEFPNFANGT
KSIMDGVVAATKNGTVSIIGGGDTASCCAKWNTEALVSHVSTGGGASLEL
LEGKTLPGVAALTSA*
BS16912.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgk-PE | 415 | CG3127-PE | 1..415 | 1..415 | 2099 | 100 | Plus |
| Pgk-PD | 415 | CG3127-PD | 1..415 | 1..415 | 2099 | 100 | Plus |
| Pgk-PC | 415 | CG3127-PC | 1..415 | 1..415 | 2099 | 100 | Plus |
| Pgk-PB | 415 | CG3127-PB | 1..415 | 1..415 | 2099 | 100 | Plus |
| Pgk-PA | 415 | CG3127-PA | 1..415 | 1..415 | 2099 | 100 | Plus |
