Clone Sequence Records
BS16915.3prime Sequence
882 bp (789 high quality bases) assembled on 2007-05-15
> BS16915.3prime
ATGGTCTAGAAAGCTTCTACGAAGCCTGGACGCCGTGAGCCTTTTTCAGT
CCCTGGAACAGCATCAGTTTCTCCCGGTTAACTTCCTTAAGCGTCTGCAC
CGCCAGCTCCAGTTGCACCTTCTTCAGCGCATGTTCGCTGGCGATGTACT
GCTCAATGAACTTCAGGCTGATCTCATCGGCGGCGAAATCGTGCTCCGTC
TTGCCAATGGCCGTATGGATCTCCTGCTCAATGTTCTGCTTATTGTCATG
TCGTCGGAAGACGCTTCTTAGCTCCGCCAGGGCACTTTCCGCCGGCGTGG
CATGCAGTTTGCCCAGTTCGGTCAGCGTTGCCTGATACTCCACTGGGATG
TTGTGTAGCTTGTAGCTCAGAGCAATCAGCTCCACGGCATTGTGCAGATA
ATCCCGACGGATCATGTCATACAGCAGGTCGTCGATGCAGCGGTGCCAAG
CGTAGAAGAAGGCCATGGGTCCAAAGTGGCGGGTGGAGCGCAGAAGATCG
AACTCCTTGGACTCGTTGAGATGCTCGAACACACGCGCTGAAATGTTGTG
GAACTCCGGCTCATGTGGCTCGTACTGCACCAAGAGTCGATCCAGGATGA
ACTCGTACTTGTGCTCCGCCAAGCACTTGGCCAGCAGCTCCTCCAGCGCG
AACATTCGTGGAGTATATGACTGGCGACCCTCCAGCGGGAAATACAACTG
GTTCATGCGCTTCGTGGTATCAAGAGTGGCGTANGCCAAGGTTCCGTCCA
TATCCCGGACGATTACCTTGCGTTCCGACTGCCGTCGGCCGAAGGTGATG
TCCGTGAATACGAACTTGGAGTTGGCGAAGTCCTTCAGCGCCGTATCCTT
GGCTATCACCCGCTCCACATCTTTTTTGATCT
BS16915.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:36:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12261-PA | 1182 | mRpS22-RA | 317..1182 | 882..17 | 4311 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:33:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS22-RA | 1341 | CG12261-RA | 411..1276 | 882..17 | 4319 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:33:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27917318..27918183 | 882..17 | 4319 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:33:32 has no hits.
BS16915.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:36:19 Download gff for
BS16915.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12261-PA | 317..1182 | 17..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:43:49 Download gff for
BS16915.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS22-RA | 410..1284 | 9..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:42:14 Download gff for
BS16915.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS22-RA | 411..1285 | 9..882 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:42:14 Download gff for
BS16915.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27917318..27918192 | 9..882 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:43:49 Download gff for
BS16915.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23743040..23743914 | 9..882 | 99 | | Minus |
BS16915.5prime Sequence
879 bp (781 high quality bases) assembled on 2007-05-15
> BS16915.5prime
GAAGTTATCAGTCGACATGCACCTGCTGCGGAGCCTGCGCCAGCTGAATG
GCCTCCAAGGAGTGCGCCAAGCTATCCGGCAGGTGTCCTCGGCGCCCACC
AAGCCCGCCGCCCTGCAGTACGAGCGCGATCCGCAGCCGCTTTTCACGGA
TGCCGAAACCCAGCGGCTGCTCCAGTCCATGACGCAACTGAACTTGGACA
AGGTGTATCGGAAGCGCACGGTGCCGGACAACAGCAGCGAAACGAAGTTC
ATGAGCAACGAGCAGCTGGACAACGAGTTCCAGAACTTGGTGGTGCGGGC
TCAGCAAATTCTGCAAATGCCACCCATTGTGCAGATCAAAAAAGATGTGG
AGCGGGTGATAGCCAAGGATACGGCGCTGAAGGACTTCGCCAACTCCAAG
TTCGTATTCACGGACATCACCTTCGGCCGACGGCAGTCGGAACGCAAGGT
AATCGTCCGGGATATGGACGGAACCTTGGCCTACGCCACTCTTGATACCA
CGAAGCGCATGAACCAGTTGTATTTCCCGCTGGAGGGTCGCCAGTCATAT
ACTCCACGAATGTTCGCGCTGGAGGAGCTGCTGGCCAAGTGCTTGGCGGA
GCACAAGTACGAGTTCATCCTGGATCGACTCTTGGTGCAGTACGAGCCAC
ATGAGCCGGAGTTCCACAACATTTCAGCGCGTGTGTTCGAGCATCTCAAC
GAGTCCAAGGAGTTCGATCTTCTGCGCTCCACCCGCCACTTTGGACCCAT
GGCCTTCTTCTACGCTTGGCACCGCTGCATCGACGACCTGCTGTATGACA
TGATCCGTCGGGATTATCTGCACAATGCCGTGGAGCTGATTGCTCTGAGC
TACAAGCTACACAACATCCCAGTGGAGTA
BS16915.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:30:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12261-PA | 1182 | mRpS22-RA | 1..863 | 17..879 | 4315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS22-RA | 1341 | CG12261-RA | 95..957 | 17..879 | 4315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:57:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27917002..27917864 | 17..879 | 4315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:57:58 has no hits.
BS16915.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:30:21 Download gff for
BS16915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12261-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:12:02 Download gff for
BS16915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS22-RA | 94..955 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:43 Download gff for
BS16915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS22-RA | 95..956 | 17..878 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:43 Download gff for
BS16915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27917002..27917863 | 17..878 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:12:02 Download gff for
BS16915.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23742724..23743585 | 17..878 | 100 | | Plus |
BS16915.complete Sequence
1214 bp assembled on 2007-05-07
GenBank Submission: FJ638210
> BS16915.complete
GAAGTTATCAGTCGACATGCACCTGCTGCGGAGCCTGCGCCAGCTGAATG
GCCTCCAAGGAGTGCGCCAAGCTATCCGGCAGGTGTCCTCGGCGCCCACC
AAGCCCGCCGCCCTGCAGTACGAGCGCGATCCGCAGCCGCTTTTCACGGA
TGCCGAAACCCAGCGGCTGCTCCAGTCCATGACGCAACTGAACTTGGACA
AGGTGTATCGGAAGCGCACGGTGCCGGACAACAGCAGCGAAACGAAGTTC
ATGAGCAACGAGCAGCTGGACAACGAGTTCCAGAACTTGGTGGTGCGGGC
TCAGCAAATTCTGCAAATGCCACCCATTGTGCAGATCAAAAAAGATGTGG
AGCGGGTGATAGCCAAGGATACGGCGCTGAAGGACTTCGCCAACTCCAAG
TTCGTATTCACGGACATCACCTTCGGCCGACGGCAGTCGGAACGCAAGGT
AATCGTCCGGGATATGGACGGAACCTTGGCCTACGCCACTCTTGATACCA
CGAAGCGCATGAACCAGTTGTATTTCCCGCTGGAGGGTCGCCAGTCATAT
ACTCCACGAATGTTCGCGCTGGAGGAGCTGCTGGCCAAGTGCTTGGCGGA
GCACAAGTACGAGTTCATCCTGGATCGACTCTTGGTGCAGTACGAGCCAC
ATGAGCCGGAGTTCCACAACATTTCAGCGCGTGTGTTCGAGCATCTCAAC
GAGTCCAAGGAGTTCGATCTTCTGCGCTCCACCCGCCACTTTGGACCCAT
GGCCTTCTTCTACGCTTGGCACCGCTGCATCGACGACCTGCTGTATGACA
TGATCCGTCGGGATTATCTGCACAATGCCGTGGAGCTGATTGCTCTGAGC
TACAAGCTACACAACATCCCAGTGGAGTATCAGGCAACGCTGACCGAACT
GGGCAAACTGCATGCCACGCCGGCGGAAAGTGCCCTGGCGGAGCTAAGAA
GCGTCTTCCGACGACATGACAATAAGCAGAACATTGAGCAGGAGATCCAT
ACGGCCATTGGCAAGACGGAGCACGATTTCGCCGCCGATGAGATCAGCCT
GAAGTTCATTGAGCAGTACATCGCCAGCGAACATGCGCTGAAGAAGGTGC
AACTGGAGCTGGCGGTGCAGACGCTTAAGGAAGTTAACCGGGAGAAACTG
ATGCTGTTCCAGGGACTGAAAAAGGCTCACGGCGTCCAGGCTTCGTAGAA
GCTTTCTAGACCAT
BS16915.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:34:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS22-RA | 1182 | CG12261-PA | 1..1182 | 17..1198 | 5910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:34:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS22-RA | 1341 | CG12261-RA | 95..1276 | 17..1198 | 5910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:34:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27917002..27918183 | 17..1198 | 5910 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:34:32 has no hits.
BS16915.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:25 Download gff for
BS16915.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS22-RA | 1..1182 | 17..1198 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:25 Download gff for
BS16915.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS22-RA | 94..1284 | 17..1206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:03:33 Download gff for
BS16915.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS22-RA | 94..1275 | 17..1198 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:25 Download gff for
BS16915.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS22-RA | 94..1284 | 17..1206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:32 Download gff for
BS16915.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS22-RA | 95..1276 | 17..1198 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:32 Download gff for
BS16915.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27917002..27918183 | 17..1198 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:03:33 Download gff for
BS16915.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23742724..23743905 | 17..1198 | 100 | | Plus |
BS16915.pep Sequence
Translation from 16 to 1197
> BS16915.pep
MHLLRSLRQLNGLQGVRQAIRQVSSAPTKPAALQYERDPQPLFTDAETQR
LLQSMTQLNLDKVYRKRTVPDNSSETKFMSNEQLDNEFQNLVVRAQQILQ
MPPIVQIKKDVERVIAKDTALKDFANSKFVFTDITFGRRQSERKVIVRDM
DGTLAYATLDTTKRMNQLYFPLEGRQSYTPRMFALEELLAKCLAEHKYEF
ILDRLLVQYEPHEPEFHNISARVFEHLNESKEFDLLRSTRHFGPMAFFYA
WHRCIDDLLYDMIRRDYLHNAVELIALSYKLHNIPVEYQATLTELGKLHA
TPAESALAELRSVFRRHDNKQNIEQEIHTAIGKTEHDFAADEISLKFIEQ
YIASEHALKKVQLELAVQTLKEVNREKLMLFQGLKKAHGVQAS*
BS16915.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS22-PA | 393 | CG12261-PA | 1..393 | 1..393 | 2005 | 100 | Plus |
