Clone BS16920 Report

Search the DGRC for BS16920

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:169
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptVap-33B-RC
Protein status:BS16920.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16920.3prime Sequence

753 bp (753 high quality bases) assembled on 2007-05-15

> BS16920.3prime
ATGGTCTAGAAAGCTTTTATTTGCGCTTAGCGCACGAATACGCCGTTGCC
TTGGGACAGGTAGCGGCGTGCTGGCCGAGCTGCTGGTACATCAGAAAGCC
GAAGCCGGCAAACAACAGGAACAACAGCGCCAGCGTCACGTATTGCAGGT
TCTGGGTGAATGCCAACTGACGCTCCATTGCCGTAGCTGGATCTACGCCA
GCACCGGACTTCTTGCTGCAATCCACGCTGGCCTTACTGGACTTGCTTGC
GCAATCTAGCTGCGCTTTTGATTTGTTCTCATCGAAGCGGCAGACCAGTC
GATGCTGCTCCACATCCGCAGATGTGGGGGATTTGCTCCGCCACAGCTCG
GTCACATCGGCGCCACCGCATTCACCGCCTGGCGCGACCATAGCCATCAC
CAGGAACTTATCCTTGCTGTCGTCACTAAGCTTGTGCTCCGACTTCAACC
ATATGTTGATGGTGGCCTCCTGATTGGGCTGGATGATGCCGCAACGTGGT
CGCACACGGAACTTCTCCGGCGATGTGGTTTGGATCTTGTACGTCACTGC
CGAGGTGGCAATAGACTTGATGGTCATCGTGGCTTCCGCATTCTTGGAAT
TGAAGTTGACAAAATCCTTGGGATTGATGTGCAACATGCCCTCGGATGGA
GTGTGCATCTTGTTGATGTTGGTCTCCTTGAGCACCATGGGAGCGGAATC
GACAAAGGTGACGTAACTAAAACGCCCTGCCTCCGACATGTCGACTGATA
ACT

BS16920.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG33523-PC 723 CG33523-RC 1..723 739..17 3615 100 Minus
CG33523-PD 1497 CG33523-RD 802..1497 712..17 3480 100 Minus
CG33523-PA 705 CG33523-RA 10..705 712..17 3480 100 Minus
CG33523-PB 621 CG33523-RB 1..621 637..17 3105 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33B-RC 1656 CG33523-RC 100..822 739..17 3615 100 Minus
Vap-33B-RE 2672 CG33523-RE 1143..1838 712..17 3480 100 Minus
Vap-33B-RF 2574 CG33523-RF 1045..1740 712..17 3480 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5928702..5929040 537..199 1695 100 Minus
3L 28110227 3L 5929104..5929286 199..17 915 100 Minus
3L 28110227 3L 5928536..5928640 640..536 525 100 Minus
3L 28110227 3L 5928224..5928297 712..639 370 100 Minus
Blast to na_te.dros performed on 2015-02-04 20:57:33 has no hits.

BS16920.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:36:14 Download gff for BS16920.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33523-PC 1..723 17..739 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:37:08 Download gff for BS16920.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33523-RC 100..827 10..739 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:37:21 Download gff for BS16920.3prime
Subject Subject Range Query Range Percent Splice Strand
Vap-33B-RC 100..827 10..739 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:37:21 Download gff for BS16920.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5927881..5927907 713..739 100 -> Minus
3L 5928224..5928296 640..712 100 -> Minus
3L 5928537..5928640 536..639 100 -> Minus
3L 5928704..5929039 200..535 100 -> Minus
3L 5929104..5929291 10..199 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:37:08 Download gff for BS16920.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5920981..5921007 713..739 100 -> Minus
arm_3L 5921324..5921396 640..712 100 -> Minus
arm_3L 5921637..5921740 536..639 100 -> Minus
arm_3L 5921804..5922139 200..535 100 -> Minus
arm_3L 5922204..5922391 10..199 98   Minus

BS16920.5prime Sequence

753 bp (753 high quality bases) assembled on 2007-05-15

> BS16920.5prime
GAAGTTATCAGTCGACATGTCGGAGGCAGGGCGTTTTAGTTACGTCACCT
TTGTCGATTCCGCTCCCATGGTGCTCAAGGAGACCAACATCAACAAGATG
CACACTCCATCCGAGGGCATGTTGCACATCAATCCCAAGGATTTTGTCAA
CTTCAATTCCAAGAATGCGGAAGCCACGATGACCATCAAGTCTATTGCCA
CCTCGGCAGTGACGTACAAGATCCAAACCACATCGCCGGAGAAGTTCCGT
GTGCGACCACGTTGCGGCATCATCCAGCCCAATCAGGAGGCCACCATCAA
CATATGGTTGAAGTCGGAGCACAAGCTTAGTGACGACAGCAAGGATAAGT
TCCTGGTGATGGCTATGGTCGCGCCAGGCGGTGAATGCGGTGGCGCCGAT
GTGACCGAGCTGTGGCGGAGCAAATCCCCCACATCTGCGGATGTGGAGCA
GCATCGACTGGTCTGCCGCTTCGATGAGAACAAATCAAAAGCGCAGCTAG
ATTGCGCAAGCAAGTCCAGTAAGGCCAGCGTGGATTGCAGCAAGAAGTCC
GGTGCTGGCGTAGATCCAGCTACGGCAATGGAGCGTCAGTTGGCATTCAC
CCAGAACCTGCAATACGTGACGCTGGCGCTGTTGTTCCTGTTGTTTGCCG
GCTTCGGCTTTCTGATGTACCAGCAGCTCGGCCAGCACGCCGCTACCTGT
CCCAAGGCAACGGCGTATTCGTGCGCTAAGCGCAAATAANAGCTTTCTAG
ACC

BS16920.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG33523-PC 723 CG33523-RC 1..723 17..739 3615 100 Plus
CG33523-PD 1497 CG33523-RD 802..1497 44..739 3480 100 Plus
CG33523-PA 705 CG33523-RA 10..705 44..739 3480 100 Plus
CG33523-PB 621 CG33523-RB 1..621 119..739 3105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33B-RC 1656 CG33523-RC 100..822 17..739 3615 100 Plus
Vap-33B-RE 2672 CG33523-RE 1143..1838 44..739 3480 100 Plus
Vap-33B-RF 2574 CG33523-RF 1045..1740 44..739 3480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5928702..5929040 219..557 1695 100 Plus
3L 28110227 3L 5929104..5929286 557..739 915 100 Plus
3L 28110227 3L 5928536..5928640 116..220 525 100 Plus
3L 28110227 3L 5928224..5928297 44..117 370 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:30:05 has no hits.

BS16920.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:30:16 Download gff for BS16920.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33523-PC 1..723 17..739 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:17:15 Download gff for BS16920.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33523-RC 100..827 17..746 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:01:58 Download gff for BS16920.5prime
Subject Subject Range Query Range Percent Splice Strand
Vap-33B-RC 100..827 17..746 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:01:58 Download gff for BS16920.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5927881..5927907 17..43 100 -> Plus
3L 5928224..5928296 44..116 100 -> Plus
3L 5928537..5928640 117..220 100 -> Plus
3L 5928704..5929039 221..556 100 -> Plus
3L 5929104..5929291 557..746 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:17:15 Download gff for BS16920.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5920981..5921007 17..43 100 -> Plus
arm_3L 5921324..5921396 44..116 100 -> Plus
arm_3L 5921637..5921740 117..220 100 -> Plus
arm_3L 5921804..5922139 221..556 100 -> Plus
arm_3L 5922204..5922391 557..746 98   Plus

BS16920.complete Sequence

755 bp assembled on 2007-05-07

GenBank Submission: FJ638211

> BS16920.complete
GAAGTTATCAGTCGACATGTCGGAGGCAGGGCGTTTTAGTTACGTCACCT
TTGTCGATTCCGCTCCCATGGTGCTCAAGGAGACCAACATCAACAAGATG
CACACTCCATCCGAGGGCATGTTGCACATCAATCCCAAGGATTTTGTCAA
CTTCAATTCCAAGAATGCGGAAGCCACGATGACCATCAAGTCTATTGCCA
CCTCGGCAGTGACGTACAAGATCCAAACCACATCGCCGGAGAAGTTCCGT
GTGCGACCACGTTGCGGCATCATCCAGCCCAATCAGGAGGCCACCATCAA
CATATGGTTGAAGTCGGAGCACAAGCTTAGTGACGACAGCAAGGATAAGT
TCCTGGTGATGGCTATGGTCGCGCCAGGCGGTGAATGCGGTGGCGCCGAT
GTGACCGAGCTGTGGCGGAGCAAATCCCCCACATCTGCGGATGTGGAGCA
GCATCGACTGGTCTGCCGCTTCGATGAGAACAAATCAAAAGCGCAGCTAG
ATTGCGCAAGCAAGTCCAGTAAGGCCAGCGTGGATTGCAGCAAGAAGTCC
GGTGCTGGCGTAGATCCAGCTACGGCAATGGAGCGTCAGTTGGCATTCAC
CCAGAACCTGCAATACGTGACGCTGGCGCTGTTGTTCCTGTTGTTTGCCG
GCTTCGGCTTTCTGATGTACCAGCAGCTCGGCCAGCACGCCGCTACCTGT
CCCAAGGCAACGGCGTATTCGTGCGCTAAGCGCAAATAAAAGCTTTCTAG
ACCAT

BS16920.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33B-RC 723 CG33523-PC 1..723 17..739 3615 100 Plus
Vap-33B-RF 1965 CG33523-PF 802..1497 44..739 3480 100 Plus
Vap-33B-RA 705 CG33523-PA 10..705 44..739 3480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33B-RC 1656 CG33523-RC 100..822 17..739 3615 100 Plus
Vap-33B-RE 2672 CG33523-RE 1143..1838 44..739 3480 100 Plus
Vap-33B-RF 2574 CG33523-RF 1045..1740 44..739 3480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5928702..5929040 219..557 1695 100 Plus
3L 28110227 3L 5929104..5929286 557..739 915 100 Plus
3L 28110227 3L 5928536..5928640 116..220 525 100 Plus
3L 28110227 3L 5928224..5928297 44..117 370 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:21:54 has no hits.

BS16920.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:26 Download gff for BS16920.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RC 1..723 17..739 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:53:55 Download gff for BS16920.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RC 100..827 17..746 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:13:11 Download gff for BS16920.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RC 100..820 17..737 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:26 Download gff for BS16920.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RC 100..827 17..746 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:07 Download gff for BS16920.complete
Subject Subject Range Query Range Percent Splice Strand
Vap-33B-RC 100..820 17..737 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:07 Download gff for BS16920.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5927881..5927907 17..43 100 -> Plus
3L 5928224..5928296 44..116 100 -> Plus
3L 5928537..5928640 117..220 100 -> Plus
3L 5928704..5929039 221..556 100 -> Plus
3L 5929104..5929284 557..737 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:13:11 Download gff for BS16920.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5922204..5922384 557..737 100   Plus
arm_3L 5920981..5921007 17..43 100 -> Plus
arm_3L 5921324..5921396 44..116 100 -> Plus
arm_3L 5921637..5921740 117..220 100 -> Plus
arm_3L 5921804..5922139 221..556 100 -> Plus

BS16920.pep Sequence

Translation from 16 to 738

> BS16920.pep
MSEAGRFSYVTFVDSAPMVLKETNINKMHTPSEGMLHINPKDFVNFNSKN
AEATMTIKSIATSAVTYKIQTTSPEKFRVRPRCGIIQPNQEATINIWLKS
EHKLSDDSKDKFLVMAMVAPGGECGGADVTELWRSKSPTSADVEQHRLVC
RFDENKSKAQLDCASKSSKASVDCSKKSGAGVDPATAMERQLAFTQNLQY
VTLALLFLLFAGFGFLMYQQLGQHAATCPKATAYSCAKRK*

BS16920.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33B-PC 240 CG33523-PC 1..240 1..240 1243 100 Plus
Vap-33B-PA 234 CG33523-PA 4..234 10..240 1197 100 Plus
Vap-33B-PD 498 CG33523-PD 268..498 10..240 1197 100 Plus
Vap-33B-PF 654 CG33523-PF 268..498 10..240 1197 100 Plus
Vap-33B-PB 206 CG33523-PB 1..206 35..240 1068 100 Plus