Clone Sequence Records
BS16926.3prime Sequence
857 bp (794 high quality bases) assembled on 2007-05-15
> BS16926.3prime
ATGGTCTAGAAAGCTTTTAATTTTTCACATCGTCTTTGCGGGTTGTTGAC
TGTGGATCTGTGCCTAAATTTATCATGTCTCGTGGTTTCCACACCGGGGA
CCCTAGGTCCTTCATCAGCACCGGCTGGTAACTGGCCGGTGGATGCGACG
ATTGAATGAGGCGCGCCTGGCTGCCGGTGCTGCCCACCGAGAGCGTCGAT
GTGGTGCTCAACGTCAGGTGATTGGGCGTTCGACCCAGTGTGGCCTTGGG
CCTGATTGTGCCCTGCTGCGAGTCCTCCTCGCCCTCCGATTTCGTTCCAG
GATCGATCCTTTCGATGTCCGAGCTGTGATGGTGCAGATGTGGCTGCCTG
ATCGGAGGCGGCGGTGGCTCCCTTGGATGCGGATGGGGATGTGGGTGGGC
ATGGGCGTGTCCCTGCTGCATCAGCTGTTGCTGTTGCTGTTGCTGCTGCT
GCTGCTGCTGATGAGGTTCTGGGGAAGAGCAGGTGATTTCTGTAACATCG
CCCACCGTCTTGCTGCGACCGCGGAATCCAGCTGGCTGCATCTGCTGGCC
GTGGGTGTGGCCGGAGGCGTAGTGGACCACGCCCACACTGGGTGGCAGGT
CGTCCGCCTCCTGGCTGCCCGACAAATTGTCGTAGTCAATGTTGCCAGCC
GAGTGGCGCTGCGAGCCGGACTTCTTCTTCGGTTTGCCCAGAGTGTGCGA
GCCATGAACGATGGTGATCTGCTGCTTGGGACGTTCAAGCGTCTGAGAGT
TGCCCGGATAGCCCATGCTGCCCATGCCCTGCGAGGAATGGCCGGAGACG
GAGCCGGAGCTGCCGCCAAAGTTCTTCATCGGAATTGACATGTTCCGGAC
GCTTTCG
BS16926.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:36:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5406-PB | 6219 | sif-RB | 5379..6219 | 857..17 | 4205 | 100 | Minus |
| CG5406-PA | 6159 | sif-RA | 5319..6159 | 857..17 | 4205 | 100 | Minus |
| CG5406-PC | 6186 | sif-RC | 5346..6186 | 857..17 | 4205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:56:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sif-RO | 10399 | CG34418-RO | 6513..7354 | 857..16 | 4210 | 100 | Minus |
| sif-RN | 10278 | CG34418-RN | 6392..7233 | 857..16 | 4210 | 100 | Minus |
| sif-RM | 10408 | CG34418-RM | 6522..7363 | 857..16 | 4210 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:56:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5739442..5739726 | 491..207 | 1425 | 100 | Minus |
| 3L | 28110227 | 3L | 5739103..5739334 | 721..490 | 1160 | 100 | Minus |
| 3L | 28110227 | 3L | 5738878..5739016 | 857..719 | 695 | 100 | Minus |
| 3L | 28110227 | 3L | 5740102..5740208 | 208..102 | 535 | 100 | Minus |
| 3L | 28110227 | 3L | 5746465..5746554 | 105..16 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:56:34 has no hits.
BS16926.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:36:38 Download gff for
BS16926.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5406-PC | 5346..6186 | 17..857 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:12 Download gff for
BS16926.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sif-RM | 6522..7363 | 16..857 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:47 Download gff for
BS16926.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sif-RM | 6522..7363 | 16..857 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:47 Download gff for
BS16926.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5739106..5739334 | 490..718 | 100 | -> | Minus |
| 3L | 5739444..5739726 | 207..489 | 100 | -> | Minus |
| 3L | 5740104..5740207 | 103..206 | 100 | -> | Minus |
| 3L | 5746468..5746554 | 16..102 | 100 | | Minus |
| 3L | 5738878..5739016 | 719..857 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:12 Download gff for
BS16926.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5731978..5732116 | 719..857 | 100 | -> | Minus |
| arm_3L | 5732206..5732434 | 490..718 | 100 | -> | Minus |
| arm_3L | 5732544..5732826 | 207..489 | 100 | -> | Minus |
| arm_3L | 5733204..5733307 | 103..206 | 100 | -> | Minus |
| arm_3L | 5739568..5739654 | 16..102 | 100 | | Minus |
BS16926.5prime Sequence
836 bp (792 high quality bases) assembled on 2007-05-15
> BS16926.5prime
GAAGTTATCAGTCGACATGGAACAGAAATGCATCAGGCGGAAGGGATCGG
TGAGGCTAACGGAACCCACGGGTCACGCACACGTGCGAATTGAGCAGAGA
CCTCAGTTGCCACCGAGACGGCAGAAAAGTGCCGAGGAAGTGGCCACCAT
GCCAAAGAGTGCCCTGCGCCAACCGCCCGAGCAACTGGAGTGGTTCGATC
GCCGGGCTCAACAGCGTCACTCCGCCCGATCCGCTGAAGGTGGCCAGGTG
CGGGAGGAGACTATGGAGTGGCTGAAGCTCCAAAAAACTGCCAGTCCCAT
CCAGCCAGTGCGCACCTCCTCGGGTCCCAGTGAGATCACAGTCCTAAAGG
ACGAACTGCCCGACTGGCTGCTCGATCATCTGCCGCGTAAGAAGGAGCGA
GAACGCGATCGATTGCCTTCGGATGCGGACAAGGCTGTGGGTTCTGCGTA
TGCCAAGGCCTTGGCGGATCTTCTCAAGAAACCGCTGTCCCGACAAGGTT
CCGGACCCTGTGAGTTCTCGCTGCTGAAAACTGATATTGTGGAGTGGCTC
ACCAAGATGCAGAGCAGCAGTGGAACGGATAGGGGCAAGTCCCGTCGGTC
GCATCATCGCCGGAATGGCAGTGGTGGCGATGCCCAGCCCCGTTCCAATT
CCCAGGAAGATGCCCAAGATCAGTCGAAGACCAGCCATCGGAAGAGACAC
TCCCTGGGACACAGTGGAGCAGTCAGCGAAGAGGAACAGCAACAGCTCAC
TGCCGATTGGATAGCCTATCCTCTCCACAAGCTGCAATCCCTCGGAAAGC
AACCTCCTCCAGCTCNACCACCGGAGAGAATGAGCA
BS16926.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:30:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5406-PA | 6159 | sif-RA | 1..820 | 17..836 | 4081 | 99.8 | Plus |
| CG5406-PC | 6186 | sif-RC | 1..820 | 17..836 | 4081 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sif-RK | 13919 | CG34418-RK | 1627..2446 | 17..836 | 4089 | 99.9 | Plus |
| sif-RC | 10858 | CG34418-RC | 1627..2446 | 17..836 | 4089 | 99.9 | Plus |
| sif-RA | 10831 | CG34418-RA | 1627..2446 | 17..836 | 4089 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5696691..5697510 | 17..836 | 4089 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:16:04 has no hits.
BS16926.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:30:39 Download gff for
BS16926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5406-PC | 1..819 | 17..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:12:33 Download gff for
BS16926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sif-RA | 1616..2445 | 7..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:10 Download gff for
BS16926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sif-RA | 1616..2445 | 7..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:10 Download gff for
BS16926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5696680..5697509 | 7..835 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:12:33 Download gff for
BS16926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5689780..5690609 | 7..835 | 99 | | Plus |
BS16926.complete Sequence
6218 bp assembled on 2009-12-07
GenBank Submission: KX801373
> BS16926.complete
GAAGTTATCAGTCGACATGGAACAGAAATGCATCAGGCGGAAGGGATCGG
TGAGGCTAACGGAACCCACGGGTCACGCACACGTGCGAATTGAGCAGAGA
CCTCAGTTGCCACCGAGACGGCAGAAAAGTGCCGAGGAAGTGGCCACCAT
GCCAAAGAGTGCCCTGCGCCAACCGCCCGAGCAACTGGAGTGGTTCGATC
GCCGGGCTCAACAGCGTCACTCCGCCCGATCCGCTGAAGGTGGCCAGGTG
CGGGAGGAGACTATGGAGTGGCTGAAGCTCCAAAAAACTGCCAGTCCCAT
CCAGCCAGTGCGCACCTCCTCGGGTCCCAGTGAGATCACAGTCCTAAAGG
ACGAACTGCCCGACTGGCTGCTCGATCATCTGCCGCGTAAGAAGGAGCGA
GAACGCGATCGATTGCCTTCGGATGCGGACAAGGCTGTGGGTTCTGCGTA
TGCCAAGGCCTTGGCGGATCTTCTCAAGAAACCGCTGTCCCGACAAGGTT
CCGGACCCTGTGAGTTCTCGCTGCTGAAAACTGATATTGTGGAGTGGCTC
ACCAAGATGCAGAGCAGCAGTGGAACGGATAGGGGCAAGTCCCGTCGGTC
GCATCATCGCCGGAATGGCAGTGGTGGCGATGCCCAGCCCCGTTCCAATT
CCCAGGAAGATGCCCAAGATCAGTCGAAGACCAGCCATCGGAAGAGACAC
TCCCTGGGACACAGTGGAGCAGTCAGCGAAGAGGAACAGCAACAGCTCAC
TGCCGATTGGATAGCCTATCCTCTCCACAAGCTGCAATCCCTCGGAAAGC
AACCTCCTCCAGCTCAACCACCGGAGAGAATGAGCATTCCCAGTGGCTAT
GCGGTGCCCAGTGCCCTTTCACACACTCCCCTATGCCAGCGGAGGGAGGA
GCGTTCACGGGAGAGAAGACTGCGGCACTCGGCCAGCGAAGTGGTGGGGA
GTGGTGGGGCAGGAGCGGCATCCACATCAAACACCGCCCATCTGGAACGA
CTGTATGCCAAGCCACACAAAGAACGCTATCAATATGTACCGAAAACCAA
GGAGTCTAGTGGTCGGAAGGAGCGTTCCCGTCGCCATCAGACCCAAAGGT
CCGCCACGGTCTCCGATATGTCCGCCCAGCGTTCCGGTGGCCACAAGCGT
AAGTCTTCGAGTGCGGAGAGGGCTCCTCGTTCACCATCCCCGGGACCCTG
TACGGATCCCGATTGTCCACTACTGCCCATCTGTACGGATCCGCACTGCC
GGTACCAGGAGTGCCAGGCGAGGCAGTGCATCACGTCGTCGGTGAGTTCG
GTAAATCTGGCCAGGCATCAGCAACTGGCGCAGGTGCAACTGCATGCAGT
TCCAGCTCATCTGGTTGGAGCCATGGGCTCCGATGTGCCGACGACACCAT
CCACAACGGCAACGCCTCCGCCGCCAACAGGAGGTGGAACTATGGGAGTG
GGAGCAACCGGAGCAGGAGCTGGAGCGACGAGCGAACGCCGTCTGGTCAT
CTGCCACGATTGTCGATCCTGTGCCCCGCTGCTCAGCTGCCGGAATCGCA
AATGCCTCAATGCCGCCAAGTGCAACTCACTGCCTCGCTGTGCCGCCGAC
TTCAATCGCCTGCGCACCCAGCTGTCCCAGCCGCCCACCACATTGGATGA
CATTGAGCCGGCGCCACTGGACGACCTGGAGATGCAGCCACTGCCCTCGC
CACCGCATCCACATCCGCACCATCACTATCGCAGCAATTCACAACCAAAC
ACCCTCCAGAGAGGAGACTCCGCCAGTTCCGCAGGAATGGGTGCAGGAGT
CGGAGGTGCTGGACATGGTGGATTAGGAGGACCGGGATCGGGCCTCGCTT
GGCTGGAGCCAACAACCACGCTAGTGCAACCACTGCCCGCCTATGTGCAC
CACTCCAATGGCAAGCTGATGAAATCCGCCTCGGCTGCCTCACTGAATTC
CCGTCGACGGCGTCACAAAACCGTGCACTTTGGCGAGAATCTTCTGCGGG
AGGTGTGCCAAAACCGGAAGCTCATCAAGACGGAGGCCCAAGTGCCCTCC
GGTTCGGCGCCCATGAAGGCCAACATCCAGATGCTGTACAACTTCGTGGA
GGGCGTGTTGAGCGCCTGGGTGGACGACGACGAGGATCAGGTGCGCTCTG
GTGCGGAATCGGAGCCGGAGCACGGTGTGGTGCCCATGCAGCCGATCCAC
AGATGCAACCGCCTGCGTTACCAGTGCATCCGGCGCGTTGTTGAGGAGGC
TGCCGATCTCCAGGGCACCCTGAAACTGGGCAACTCCCGCTATCGCCATC
GCCATTGGCGCAGCACCGCCAAGCAGTGCAACGAAATGTTCCTTCGCAAG
ATTTCGGACGATGATCGAATGAGCCTAACTACCGCCGTTTCGGATGAAGA
TGATGGGGAAAGTGTCATGGCGTCACCATATAAAGCAAAGGCAACTGGCA
CCGCTGCATCCTCCTTCAATTGCACGGGAGCTGTTCGCAAAGCCGGCTTC
CTATCGGTAAAGAAATGGTTACTACGCAAGAAGCACCAGATCGAGCTGGC
AAGAAAGCGGGGCTGGAAGGGCTACTGGGTGTGCCTGAAGGGCACCACGC
TGCTCTTCTATCCGTGCGATTCCCGGGAGGGCCGGAGTGTGGAGGCGGCG
CCCAAGCACTTGATTATCGTGGATGGTGCAATTATGCAACCGATACCGGA
GCATCCCAAGCGCGACTACATCTTCTGTCTGAGTACGGCGTTCGGCGATG
CCTATCTCTTCCAGGCGCCCTGTCAGGTTGAGCTGGAGAACTGGGTGAAT
AGCATACACAGCGCCTGTGCCGCCGCCTTTGCCAGGCATCGCGGAAAAAC
TGGAACGCTACACCTGCTCCAGGAGGAGATCTTCCGGCTGGAGAAGGCCA
TTGAGTCGGATCACAAGCTGAAGCACATGGCCGAACTGCAGCAATCAGTT
GTCACCGATCAGGAGACGCGTCATCAGATCCAGACGCAGATACTGCAGTG
GGAGGAGAATCTGGAGCGGCTCCACTGCGAGCAGTTCCGGCTGCGCTGCT
ACATGGCCTCGCTGCAAAGTGGCGAGCTGCCCAATCCGAAGTCGCTGCTG
ACACACGTTTCGCGGCCCACGAAGAACACGCTGAACAAGCTGGGCGTGTT
CACGGTCTCCTCCTTCCACGCCTTCATCTGCGCCCGCTCGCCCTCGCTGC
TCAACAACCTGCTCGCCGGACGCGGGGCCACCAAGCGGCGACCGCCGATG
CTGTCGCGGTCCAACAGCGGTTCCAGCCGTCGCTCCATGCAGATGAATTC
ACGTGACGAACCGGAAAAAACTTTCAAAGTTGCAATGCCCGACAATGCTT
ACTCGACAGTTTATCTACGTGATGCCATGTCTGTGGAGGAATTCCTCGCC
AGCGCCTGCGCCCGTCGCAACCTCAATCCCATGGAGCACTTTGTGCGCGT
CAAGAAGCGACGTGACATGGAGGATCACAATTACTTTGTGCCGCATCGCA
ACGATCTGATTGAAAATTATCTACATAATCACGAGTTCGTGGAGGTCTGC
ATGAAGATCCTGTACCAGGTGGAGCTGCAGCGCACGACTCTGGAGCAGAT
GTGGGGCTTCTCCGTGGAGGCTGAGCTGATCGAGAATGCGGAACGGCAGG
ACGAACTGTGCTGCTACGTGAGTCGCGTGGAGGACAAGAGTGTGGCCATG
CACAATGGCATTATCAAAGGAGACGAAATAATGGTCATCAATGGCGCAAT
TGTGTCCGATCTAGATATGATGTACTTGGAGAGCGTCCTGCAGGAGGAAC
AATCGCTCAGCATGATGATGCGGTCCTCGCGCACGGAGCCACCAGATCTA
GTGGGGATCATGAGGGTTACGGACGATATGATTGACTCGCTGGTTTGTCC
GCCGCCGCCCACAGATCCGCCGGTGATGAGCGAGGAGATGATAACTGGAC
TGATTGTTCCGGCCCCCGGTTGGAATGGCACTAGCAAGGATTTGTACTCG
CCGGAGGCTGAAAGCTCGCCGGCCACCTCCTTTGTGGATCCTGCCGCAAT
GGCCGCCCAGCTGGCGGTGGGCGGCGTGGGAGGCGTGGTCGTGGGCGGAC
TGGGCGTGGCCAAGCCAACGTCGCGTACGAGCAGCTTTGAGATTGAGAAT
CTGCTAAAGACCGCGGAGCAAGTTACCGGATTTTGTCGTTCACCCCAGGA
AACGCGGAAATCGAGCCCAACCGGCTCGGTCACCTCATCGGTGTCGACCA
CGGCATTAACACCATCACGGCAGCTGACCGATGCGGAGAAGCTGCGCAAA
GTCGTCATGGAGCTGGTGGACACGGAACGCACCTATGTGAAGCACCTAAA
CAACCTGCTGGAGCACTATCTGGAGCCAATGAAACGCGAGACATTCCTGT
CCAATGCCGAGATCAACGCTCTGTTCGGCAACATACACGAGATCGTCACA
TTCCAGCGCCAATTCCTGCAGAATCTGGAGGAGTCCTTGGACCTGGAGCC
GGATTTCAACAAGTTCGAGCACTGCGGCCAGTTCAGAAATGTGCTCTTTG
CGATTGGCTCGGCCTTCCTGTACTACGTCAATCACTTCAAGCTCTACTCC
TCGTTCTGTGCCAGTCACAGCAAGGCGCAGAAAGTCCTGCATCCGAACGA
GGGCAATCACGCCCTGCAGGAGTTCCTCGCAGCCAGGAATCCCAAGCAGC
AGCATAGCAGCACCCTGGAATCGTATCTGATCAAGCCCATTCAGCGCATC
CTCAAGTATCCACTGCTCCTGCAGCAGATGCGCAACCTCACAGACACCCG
GGCCGATGAGCATGTGCATCTTTGTGAGGCACTCAAGGGCATGGAAAAGG
TCGCCGAGCACATCAACGAGATGCAACGCATCCACGAGGAGTACGGTGCC
ATATTCGATCACCTGTTCCGGCAGCACCAGAAGTCTTGCAAACAACCCAT
TGATCTAAGTCCAGGGGATCTGCTCTACTATGGCGGAGTGGAATGGCTCA
ACATCTCGGACTTTCTGGGCAAGATCAAGAAGGGACTGGAACTGCATGCC
ATGTGCTTTGTGTTTAAGTCGGCAGTGGTGTTCCTGTGCAAGGAGCGACT
GCGTCAAAAGAAGAAGTTGATGGGCGTTTCCAGCAAGAATGCCACCAATG
AGGTCGAGATCATTCGCTACCAGGTGCTCATACCCGTGACCGAGGTGCAA
GTCCGCGCCAGTTCGGCCAAGGACATGGACTCCCACTTCCTGTGGGAGCT
CATCCATCTGCGTTCCCAATTGCAACGCCGCTCCGAGAAGGTCTATGTGC
TGTCCAACAGCACTGCCGACTTCCGCAACGCCTTCCTGAAGACCATTCGC
CAGATTATCCGCGAAAGCGTCCGGAACATGTCAATTCCGATGAAGAACTT
TGGCGGCAGCTCCGGCTCCGTCTCCGGCCATTCCTCGCAGGGCATGGGCA
GCATGGGCTATCCGGGCAACTCTCAGACGCTTGAACGTCCCAAGCAGCAG
ATCACCATCGTTCATGGCTCGCACACTCTGGGCAAACCGAAGAAGAAGTC
CGGCTCGCAGCGCCACTCGGCTGGCAACATTGACTACGACAATTTGTCGG
GCAGCCAGGAGGCGGACGACCTGCCACCCAGTGTGGGCGTGGTCCACTAC
GCCTCCGGCCACACCCACGGCCAGCAGATGCAGCCAGCTGGATTCCGCGG
TCGCAGCAAGACGGTGGGCGATGTTACAGAAATCACCTGCTCTTCCCCAG
AACCTCATCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACAGCTGATG
CAGCAGGGACACGCCCATGCCCACCCACATCCCCATCCGCATCCAAGGGA
GCCACCGCCGCCTCCGATCAGGCAGCCACATCTGCACCATCACAGCTCGG
ACATCGAAAGGATCGATCCTGGAACGAAATCGGAGGGCGAGGAGGACTCG
CAGCAGGGCACAATCAGGCCCAAGGCCACACTGGGTCGAACGCCCAATCA
CCTGACGTTGAGCACCACATCGACGCTCTCGGTGGGCAGCACCGGCAGCC
AGGCGCGCCTCATTCAATCGTCGCATCCACCGGCCAGTTACCAGCCGGTG
CTGATGAAGGACCTAGGGTCCCCGGTGTGGAAACCACGAGACATGATAAA
TTTAGGCACAGATCCACAGTCAACAACCCGCAAAGACGATGTGAAAAATT
AAAAGCTTTCTAGACCAT
BS16926.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:14:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sif-RC | 6186 | CG34418-PC | 1..6186 | 17..6202 | 30915 | 100 | Plus |
| sif-RK | 7941 | CG34418-PK | 1..6101 | 17..6117 | 30490 | 100 | Plus |
| sif-RA | 6159 | CG34418-PA | 1..4156 | 17..4172 | 20765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:14:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sif-RC | 10858 | CG34418-RC | 1627..7813 | 17..6203 | 30920 | 100 | Plus |
| sif-RK | 13919 | CG34418-RK | 1627..7727 | 17..6117 | 30490 | 100 | Plus |
| sif-RA | 10831 | CG34418-RA | 1627..5782 | 17..4172 | 20765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:14:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5696691..5699024 | 17..2350 | 11655 | 100 | Plus |
| 3L | 28110227 | 3L | 5738638..5739016 | 5122..5500 | 1895 | 100 | Plus |
| 3L | 28110227 | 3L | 5739442..5739726 | 5728..6012 | 1425 | 100 | Plus |
| 3L | 28110227 | 3L | 5704961..5705243 | 2496..2778 | 1415 | 100 | Plus |
| 3L | 28110227 | 3L | 5739103..5739334 | 5498..5729 | 1160 | 100 | Plus |
| 3L | 28110227 | 3L | 5720874..5721104 | 3290..3520 | 1155 | 100 | Plus |
| 3L | 28110227 | 3L | 5717536..5717742 | 3090..3296 | 1020 | 99.5 | Plus |
| 3L | 28110227 | 3L | 5731440..5731638 | 3975..4173 | 995 | 100 | Plus |
| 3L | 28110227 | 3L | 5735724..5735920 | 4341..4537 | 985 | 100 | Plus |
| 3L | 28110227 | 3L | 5722382..5722569 | 3521..3708 | 940 | 100 | Plus |
| 3L | 28110227 | 3L | 5716096..5716279 | 2908..3091 | 920 | 100 | Plus |
| 3L | 28110227 | 3L | 5737984..5738163 | 4647..4826 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 5734439..5734609 | 4172..4342 | 855 | 100 | Plus |
| 3L | 28110227 | 3L | 5738414..5738574 | 4963..5123 | 805 | 100 | Plus |
| 3L | 28110227 | 3L | 5728490..5728642 | 3822..3974 | 765 | 100 | Plus |
| 3L | 28110227 | 3L | 5703923..5704070 | 2349..2496 | 740 | 100 | Plus |
| 3L | 28110227 | 3L | 5738225..5738364 | 4826..4965 | 700 | 100 | Plus |
| 3L | 28110227 | 3L | 5706439..5706574 | 2774..2909 | 680 | 100 | Plus |
| 3L | 28110227 | 3L | 5726479..5726596 | 3707..3824 | 590 | 100 | Plus |
| 3L | 28110227 | 3L | 5735986..5736094 | 4538..4646 | 545 | 100 | Plus |
| 3L | 28110227 | 3L | 5740102..5740208 | 6011..6117 | 535 | 100 | Plus |
| 3L | 28110227 | 3L | 5746465..5746554 | 6114..6203 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:14:27 has no hits.
BS16926.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:58 Download gff for
BS16926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sif-RG | 1042..7218 | 17..6193 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:30 Download gff for
BS16926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sif-RC | 1627..7803 | 17..6193 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:17:55 Download gff for
BS16926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sif-RG | 1042..7218 | 17..6193 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:56 Download gff for
BS16926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sif-RC | 1627..7803 | 17..6193 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:56 Download gff for
BS16926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5735986..5736094 | 4538..4646 | 100 | -> | Plus |
| 3L | 5737984..5738163 | 4647..4826 | 100 | -> | Plus |
| 3L | 5738226..5738363 | 4827..4964 | 100 | -> | Plus |
| 3L | 5738416..5738573 | 4965..5122 | 100 | -> | Plus |
| 3L | 5735726..5735920 | 4343..4537 | 100 | -> | Plus |
| 3L | 5696691..5699024 | 17..2350 | 99 | -> | Plus |
| 3L | 5703925..5704070 | 2351..2496 | 100 | -> | Plus |
| 3L | 5704962..5705241 | 2497..2776 | 100 | -> | Plus |
| 3L | 5706442..5706573 | 2777..2908 | 100 | -> | Plus |
| 3L | 5716097..5716279 | 2909..3091 | 100 | -> | Plus |
| 3L | 5717538..5717738 | 3092..3292 | 100 | -> | Plus |
| 3L | 5720877..5721104 | 3293..3520 | 100 | -> | Plus |
| 3L | 5722382..5722568 | 3521..3707 | 100 | -> | Plus |
| 3L | 5726480..5726594 | 3708..3822 | 100 | -> | Plus |
| 3L | 5728491..5728642 | 3823..3974 | 100 | -> | Plus |
| 3L | 5731440..5731636 | 3975..4171 | 100 | -> | Plus |
| 3L | 5734439..5734609 | 4172..4342 | 100 | -> | Plus |
| 3L | 5738639..5739016 | 5123..5500 | 100 | -> | Plus |
| 3L | 5739106..5739334 | 5501..5729 | 100 | -> | Plus |
| 3L | 5739444..5739726 | 5730..6012 | 100 | -> | Plus |
| 3L | 5740104..5740207 | 6013..6116 | 100 | -> | Plus |
| 3L | 5746468..5746544 | 6117..6193 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:30 Download gff for
BS16926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5728826..5729020 | 4343..4537 | 100 | -> | Plus |
| arm_3L | 5729086..5729194 | 4538..4646 | 100 | -> | Plus |
| arm_3L | 5731516..5731673 | 4965..5122 | 100 | -> | Plus |
| arm_3L | 5731084..5731263 | 4647..4826 | 100 | -> | Plus |
| arm_3L | 5731326..5731463 | 4827..4964 | 100 | -> | Plus |
| arm_3L | 5689791..5692124 | 17..2350 | 99 | -> | Plus |
| arm_3L | 5697025..5697170 | 2351..2496 | 100 | -> | Plus |
| arm_3L | 5698062..5698341 | 2497..2776 | 100 | -> | Plus |
| arm_3L | 5699542..5699673 | 2777..2908 | 100 | -> | Plus |
| arm_3L | 5709197..5709379 | 2909..3091 | 100 | -> | Plus |
| arm_3L | 5710638..5710838 | 3092..3292 | 100 | -> | Plus |
| arm_3L | 5713977..5714204 | 3293..3520 | 100 | -> | Plus |
| arm_3L | 5715482..5715668 | 3521..3707 | 100 | -> | Plus |
| arm_3L | 5719580..5719694 | 3708..3822 | 100 | -> | Plus |
| arm_3L | 5721591..5721742 | 3823..3974 | 100 | -> | Plus |
| arm_3L | 5724540..5724736 | 3975..4171 | 100 | -> | Plus |
| arm_3L | 5727539..5727709 | 4172..4342 | 100 | -> | Plus |
| arm_3L | 5731739..5732116 | 5123..5500 | 100 | -> | Plus |
| arm_3L | 5732206..5732434 | 5501..5729 | 100 | -> | Plus |
| arm_3L | 5732544..5732826 | 5730..6012 | 100 | -> | Plus |
| arm_3L | 5733204..5733307 | 6013..6116 | 100 | -> | Plus |
| arm_3L | 5739568..5739644 | 6117..6193 | 100 | | Plus |
BS16926.pep Sequence
Translation from 16 to 6201
> BS16926.pep
MEQKCIRRKGSVRLTEPTGHAHVRIEQRPQLPPRRQKSAEEVATMPKSAL
RQPPEQLEWFDRRAQQRHSARSAEGGQVREETMEWLKLQKTASPIQPVRT
SSGPSEITVLKDELPDWLLDHLPRKKERERDRLPSDADKAVGSAYAKALA
DLLKKPLSRQGSGPCEFSLLKTDIVEWLTKMQSSSGTDRGKSRRSHHRRN
GSGGDAQPRSNSQEDAQDQSKTSHRKRHSLGHSGAVSEEEQQQLTADWIA
YPLHKLQSLGKQPPPAQPPERMSIPSGYAVPSALSHTPLCQRREERSRER
RLRHSASEVVGSGGAGAASTSNTAHLERLYAKPHKERYQYVPKTKESSGR
KERSRRHQTQRSATVSDMSAQRSGGHKRKSSSAERAPRSPSPGPCTDPDC
PLLPICTDPHCRYQECQARQCITSSVSSVNLARHQQLAQVQLHAVPAHLV
GAMGSDVPTTPSTTATPPPPTGGGTMGVGATGAGAGATSERRLVICHDCR
SCAPLLSCRNRKCLNAAKCNSLPRCAADFNRLRTQLSQPPTTLDDIEPAP
LDDLEMQPLPSPPHPHPHHHYRSNSQPNTLQRGDSASSAGMGAGVGGAGH
GGLGGPGSGLAWLEPTTTLVQPLPAYVHHSNGKLMKSASAASLNSRRRRH
KTVHFGENLLREVCQNRKLIKTEAQVPSGSAPMKANIQMLYNFVEGVLSA
WVDDDEDQVRSGAESEPEHGVVPMQPIHRCNRLRYQCIRRVVEEAADLQG
TLKLGNSRYRHRHWRSTAKQCNEMFLRKISDDDRMSLTTAVSDEDDGESV
MASPYKAKATGTAASSFNCTGAVRKAGFLSVKKWLLRKKHQIELARKRGW
KGYWVCLKGTTLLFYPCDSREGRSVEAAPKHLIIVDGAIMQPIPEHPKRD
YIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACAAAFARHRGKTGTLHL
LQEEIFRLEKAIESDHKLKHMAELQQSVVTDQETRHQIQTQILQWEENLE
RLHCEQFRLRCYMASLQSGELPNPKSLLTHVSRPTKNTLNKLGVFTVSSF
HAFICARSPSLLNNLLAGRGATKRRPPMLSRSNSGSSRRSMQMNSRDEPE
KTFKVAMPDNAYSTVYLRDAMSVEEFLASACARRNLNPMEHFVRVKKRRD
MEDHNYFVPHRNDLIENYLHNHEFVEVCMKILYQVELQRTTLEQMWGFSV
EAELIENAERQDELCCYVSRVEDKSVAMHNGIIKGDEIMVINGAIVSDLD
MMYLESVLQEEQSLSMMMRSSRTEPPDLVGIMRVTDDMIDSLVCPPPPTD
PPVMSEEMITGLIVPAPGWNGTSKDLYSPEAESSPATSFVDPAAMAAQLA
VGGVGGVVVGGLGVAKPTSRTSSFEIENLLKTAEQVTGFCRSPQETRKSS
PTGSVTSSVSTTALTPSRQLTDAEKLRKVVMELVDTERTYVKHLNNLLEH
YLEPMKRETFLSNAEINALFGNIHEIVTFQRQFLQNLEESLDLEPDFNKF
EHCGQFRNVLFAIGSAFLYYVNHFKLYSSFCASHSKAQKVLHPNEGNHAL
QEFLAARNPKQQHSSTLESYLIKPIQRILKYPLLLQQMRNLTDTRADEHV
HLCEALKGMEKVAEHINEMQRIHEEYGAIFDHLFRQHQKSCKQPIDLSPG
DLLYYGGVEWLNISDFLGKIKKGLELHAMCFVFKSAVVFLCKERLRQKKK
LMGVSSKNATNEVEIIRYQVLIPVTEVQVRASSAKDMDSHFLWELIHLRS
QLQRRSEKVYVLSNSTADFRNAFLKTIRQIIRESVRNMSIPMKNFGGSSG
SVSGHSSQGMGSMGYPGNSQTLERPKQQITIVHGSHTLGKPKKKSGSQRH
SAGNIDYDNLSGSQEADDLPPSVGVVHYASGHTHGQQMQPAGFRGRSKTV
GDVTEITCSSPEPHQQQQQQQQQQQQLMQQGHAHAHPHPHPHPREPPPPP
IRQPHLHHHSSDIERIDPGTKSEGEEDSQQGTIRPKATLGRTPNHLTLST
TSTLSVGSTGSQARLIQSSHPPASYQPVLMKDLGSPVWKPRDMINLGTDP
QSTTRKDDVKN*
BS16926.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:39:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sif-PC | 2061 | CG34418-PC | 1..2061 | 1..2061 | 10835 | 100 | Plus |
| sif-PA | 2052 | CG34418-PA | 1..2052 | 1..2061 | 10764 | 99.6 | Plus |
| sif-PK | 2646 | CG34418-PK | 1..2036 | 1..2036 | 10694 | 100 | Plus |
| sif-PO | 2088 | CG34418-PO | 805..2088 | 778..2061 | 6710 | 99.9 | Plus |
| sif-PN | 2081 | CG34418-PN | 798..2081 | 778..2061 | 6710 | 99.9 | Plus |
