Clone Sequence Records
BS16930.3prime Sequence
834 bp (744 high quality bases) assembled on 2007-05-15
> BS16930.3prime
ATGGTCTAGAAAGCTTTTACTCCAAGGCACCACGATGCTGCAGCCAAGGT
AAGACAACTTTCATATGCCTGCGGTATCTGGGATTGGTGTAGATGGAATT
CGTAAAGTTTGAATGCTCGTTCGAAATGATCTTATCGAAATCAGCATCAT
CTGTGGGGTCCAGCAGAACGACTCCCATGACGGATATAGAGCAAATGAAG
GCCCATCCACTGTACTTGTTAAGAGCATTGCGAATGCTTCTTAAAGTTGG
CAGTTTCTTAGAGTAGTTCAGAAGTTTGAGGTGTTTCACCAACTCTGAGT
GGTAGAACCAGACGAAATAGTCGAATTTCTCCGTTTTAATGTCCAGGCTG
GTCGATGAAAGCAAGAAATAATACAAATCCTGCGCAACTGATCCCCACTT
CGGCAGTTGAAGATCCACAAAGTAGGTATTTGATATCTCGTTTTTGTCGT
TGTACTGGAACATAATGTTGTTAGACCAACCATCGCCATGGTTGAGGGCA
TTGAACTCGTCGGATTTTGGTTCCTTAATATCATTATATATATCGAATAA
CTTTTCTGAAACACTTTGCAAATCCTTTATGTAAGCTGCATGTCCATCGT
ACTGATCGATATTATTTAGCAAAATTTTAGCGCTGCGATCGCAGAAAAAG
TTCATGATTTCTTTCGATTTGAAAAAACCATTGGTATACTTTTCTTCGTA
AGGGCCCTTGAGGTCCACGCGAACTGCAGAAGCCGCATGCCATTGGGCGA
ACTTTCTCAGGACACTTTCGGTGTGAGCTTGGTCCAAGCCCTGCAGGCGG
TCTACATTCTTGAATCCTCGAGGCCTGAGATCCT
BS16930.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:40:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10560-PA | 1245 | CG10560-RA | 428..1245 | 834..17 | 4090 | 100 | Minus |
CG10553-PA | 1245 | CG10553-RA | 769..812 | 493..450 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:06:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10560-RA | 1367 | CG10560-RA | 473..1292 | 834..15 | 4100 | 100 | Minus |
CG10553-RA | 1442 | CG10553-RA | 465..1108 | 834..191 | 430 | 72.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:06:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25318875..25319242 | 202..569 | 1840 | 100 | Plus |
3R | 32079331 | 3R | 25319305..25319570 | 569..834 | 1330 | 100 | Plus |
3R | 32079331 | 3R | 25318625..25318812 | 15..202 | 940 | 100 | Plus |
3R | 32079331 | 3R | 25316866..25317156 | 203..493 | 375 | 75.3 | Plus |
3R | 32079331 | 3R | 25317396..25317558 | 672..834 | 275 | 77.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:06:18 has no hits.
BS16930.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:40:30 Download gff for
BS16930.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10560-PA | 428..1245 | 17..834 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:50 Download gff for
BS16930.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10560-RA | 473..1296 | 9..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:04:36 Download gff for
BS16930.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10560-RA | 473..1296 | 9..834 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:04:36 Download gff for
BS16930.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25319305..25319570 | 569..834 | 100 | | Plus |
3R | 25318621..25318811 | 9..201 | 98 | <- | Plus |
3R | 25318875..25319241 | 202..568 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:50 Download gff for
BS16930.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21144343..21144533 | 9..201 | 98 | <- | Plus |
arm_3R | 21144597..21144963 | 202..568 | 100 | <- | Plus |
arm_3R | 21145027..21145292 | 569..834 | 100 | | Plus |
BS16930.5prime Sequence
820 bp (740 high quality bases) assembled on 2007-05-15
> BS16930.5prime
GAAGTTATCAGTCGACATGCCACCCCAGACAAACGATGAAAATGTTTGCG
AGCGAGAGGTTCCAATTCCGGGCTGGGTGAAACCAGAAGTCTTTGAGGAC
CTGCTCAAGGATAATGTCAAGGATTATAAGAAGACCAAGGCCCTAAGGGC
CAAAGCAGGAGTCGCTGCTGGCGAAAACTATGCCACCATAATGCTGAGAC
TGGAACTAGATGTGGAAACGAAGGACAAATCGGAAGTAACCAAAGCATTC
ATGCTAAAAACTCCCCACGACACTGACGCATATCGCAAGCTTCTTCAAGA
AACGAATATCTTCGATGTGGAGCGCGGAATGTATTTGGTAGTGGTTCCCG
AGCTGGAGCAAATGTACCGGGATGTGGGCTTGGAGGTAAAGTTTGGGGCT
GAGGCCTACGAAATAAAGGTGAGCGAGAACTATGTTCTACTGGAGGATCT
CAGGCCTCGAGGATTCAAGAATGTAGACCGCCTGCAGGGCTTGGACCAAG
CTCACACCGAAAGTGTCCTGAGAAAGTTCGCCCAATGGCATGCGGCTTCT
GCAGTTCGCGTGGACCTCAAGGGCCCTTACGAAGAAAAGTATACCAATGG
TTTTTTCAAATCGAAAGAAATCATGAACTTTTTCTGCGATCGCAGCGCTA
AAATTTTGCTAAATAATATCGATCAGTACGATGGACATGCAGCTTACATA
AAGGATTTGCAAAGTGTTTCAGAAAAGTTATTCGATATATATAATGATAT
TAAGGAACCAAAATCCGACGAGTTNCATGCCCTCAACCATGGCGATGGTT
GGTCTAACAACATTATGTTC
BS16930.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:33:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10560-PA | 1245 | CG10560-RA | 1..804 | 17..820 | 3976 | 99.7 | Plus |
CG10553-PA | 1245 | CG10553-RA | 290..371 | 306..387 | 185 | 89 | Plus |
CG10553-PA | 1245 | CG10553-RA | 139..179 | 155..195 | 180 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:06:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10560-RA | 1367 | CG10560-RA | 46..849 | 17..820 | 3994 | 99.8 | Plus |
CG10553-RA | 1442 | CG10553-RA | 44..627 | 23..606 | 885 | 78 | Plus |
CG10559-RB | 1435 | CG10559-RB | 319..523 | 341..545 | 245 | 74.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:06:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25319305..25319790 | 709..224 | 2430 | 100 | Minus |
3R | 32079331 | 3R | 25319849..25320056 | 224..17 | 1040 | 100 | Minus |
3R | 32079331 | 3R | 25317396..25317696 | 606..306 | 605 | 80.1 | Minus |
3R | 32079331 | 3R | 25319131..25319242 | 820..709 | 534 | 98.2 | Minus |
3R | 32079331 | 3R | 25317878..25318068 | 213..23 | 325 | 78 | Minus |
3R | 32079331 | 3R | 25315538..25315742 | 545..341 | 245 | 74.6 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:06:28 has no hits.
BS16930.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:33:54 Download gff for
BS16930.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10560-PA | 1..804 | 17..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:49:07 Download gff for
BS16930.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10560-RA | 46..849 | 17..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:10 Download gff for
BS16930.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10560-RA | 46..849 | 17..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:10 Download gff for
BS16930.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25319131..25319241 | 710..820 | 98 | <- | Minus |
3R | 25319305..25319789 | 225..709 | 100 | <- | Minus |
3R | 25319849..25320056 | 17..224 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:49:07 Download gff for
BS16930.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21144853..21144963 | 710..820 | 98 | <- | Minus |
arm_3R | 21145027..21145511 | 225..709 | 100 | <- | Minus |
arm_3R | 21145571..21145778 | 17..224 | 100 | | Minus |
BS16930.complete Sequence
1277 bp assembled on 2007-05-07
GenBank Submission: FJ638212
> BS16930.complete
GAAGTTATCAGTCGACATGCCACCCCAGACAAACGATGAAAATGTTTGCG
AGCGAGAGGTTCCAATTCCGGGCTGGGTGAAACCAGAAGTCTTTGAGGAC
CTGCTCAAGGATAATGTCAAGGATTATAAGAAGACCAAGGCCCTAAGGGC
CAAAGCAGGAGTCGCTGCTGGCGAAAACTATGCCACCATAATGCTGAGAC
TGGAACTAGATGTGGAAACGAAGGACAAATCGGAAGTAACCAAAGCATTC
ATGCTAAAAACTCCCCACGACACTGACGCATATCGCAAGCTTCTTCAAGA
AACGAATATCTTCGATGTGGAGCGCGGAATGTATTTGGTAGTGGTTCCCG
AGCTGGAGCAAATGTACCGGGATGTGGGCTTGGAGGTAAAGTTTGGGGCT
GAGGCCTACGAAATAAAGGTGAGCGAGAACTATGTTCTACTGGAGGATCT
CAGGCCTCGAGGATTCAAGAATGTAGACCGCCTGCAGGGCTTGGACCAAG
CTCACACCGAAAGTGTCCTGAGAAAGTTCGCCCAATGGCATGCGGCTTCT
GCAGTTCGCGTGGACCTCAAGGGCCCTTACGAAGAAAAGTATACCAATGG
TTTTTTCAAATCGAAAGAAATCATGAACTTTTTCTGCGATCGCAGCGCTA
AAATTTTGCTAAATAATATCGATCAGTACGATGGACATGCAGCTTACATA
AAGGATTTGCAAAGTGTTTCAGAAAAGTTATTCGATATATATAATGATAT
TAAGGAACCAAAATCCGACGAGTTCAATGCCCTCAACCATGGCGATGGTT
GGTCTAACAACATTATGTTCCAGTACAACGACAAAAACGAGATATCAAAT
ACCTACTTTGTGGATCTTCAACTGCCGAAGTGGGGATCAGTTGCGCAGGA
TTTGTATTATTTCTTGCTTTCATCGACCAGCCTGGACATTAAAACGGAGA
AATTCGACTATTTCGTCTGGTTCTACCACTCAGAGTTGGTGAAACACCTC
AAACTTCTGAACTACTCTAAGAAACTGCCAACTTTAAGAAGCATTCGCAA
TGCTCTTAACAAGTACAGTGGATGGGCCTTCATTTGCTCTATATCCGTCA
TGGGAGTCGTTCTGCTGGACCCCACAGATGATGCTGATTTCGATAAGATC
ATTTCGAACGAGCATTCAAACTTTACGAATTCCATCTACACCAATCCCAG
ATACCGCAGGCATATGAAAGTTGTCTTACCTTGGCTGCAGCATCGTGGTG
CCTTGGAGTAAAAGCTTTCTAGACCAT
BS16930.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:19:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10560-RA | 1245 | CG10560-PA | 1..1245 | 17..1261 | 6225 | 100 | Plus |
CG10553-RA | 1245 | CG10553-PA | 7..590 | 23..606 | 835 | 76.2 | Plus |
CG10553-RA | 1245 | CG10553-PA | 769..1071 | 785..1087 | 390 | 75.2 | Plus |
CG10559-RB | 1248 | CG10559-PB | 307..511 | 341..545 | 245 | 74.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:19:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10560-RA | 1367 | CG10560-RA | 46..1292 | 17..1263 | 6235 | 100 | Plus |
CG10553-RA | 1442 | CG10553-RA | 44..627 | 23..606 | 835 | 76.2 | Plus |
CG10553-RA | 1442 | CG10553-RA | 806..1108 | 785..1087 | 390 | 75.2 | Plus |
CG10559-RB | 1435 | CG10559-RB | 319..523 | 341..545 | 245 | 74.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:19:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25319305..25319790 | 709..224 | 2430 | 100 | Minus |
3R | 32079331 | 3R | 25318875..25319242 | 1076..709 | 1840 | 100 | Minus |
3R | 32079331 | 3R | 25319849..25320056 | 224..17 | 1040 | 100 | Minus |
3R | 32079331 | 3R | 25318625..25318812 | 1263..1076 | 940 | 100 | Minus |
3R | 32079331 | 3R | 25317396..25317696 | 606..306 | 605 | 80.1 | Minus |
3R | 32079331 | 3R | 25316866..25317156 | 1075..785 | 375 | 75.3 | Minus |
3R | 32079331 | 3R | 25317878..25318068 | 213..23 | 325 | 78 | Minus |
3R | 32079331 | 3R | 25315538..25315742 | 545..341 | 245 | 74.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:19:41 has no hits.
BS16930.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:28 Download gff for
BS16930.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10560-RA | 1..1245 | 17..1261 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:27 Download gff for
BS16930.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10560-RA | 24..1274 | 17..1269 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:22:27 Download gff for
BS16930.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10560-RA | 46..1288 | 17..1259 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:28 Download gff for
BS16930.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10560-RA | 24..1274 | 17..1269 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:00 Download gff for
BS16930.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10560-RA | 46..1288 | 17..1259 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:00 Download gff for
BS16930.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25318629..25318811 | 1077..1259 | 100 | <- | Minus |
3R | 25318875..25319241 | 710..1076 | 100 | <- | Minus |
3R | 25319305..25319789 | 225..709 | 100 | <- | Minus |
3R | 25319849..25320056 | 17..224 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:22:27 Download gff for
BS16930.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21144351..21144533 | 1077..1259 | 100 | <- | Minus |
arm_3R | 21144597..21144963 | 710..1076 | 100 | <- | Minus |
arm_3R | 21145027..21145511 | 225..709 | 100 | <- | Minus |
arm_3R | 21145571..21145778 | 17..224 | 100 | | Minus |
BS16930.pep Sequence
Translation from 16 to 1260
> BS16930.pep
MPPQTNDENVCEREVPIPGWVKPEVFEDLLKDNVKDYKKTKALRAKAGVA
AGENYATIMLRLELDVETKDKSEVTKAFMLKTPHDTDAYRKLLQETNIFD
VERGMYLVVVPELEQMYRDVGLEVKFGAEAYEIKVSENYVLLEDLRPRGF
KNVDRLQGLDQAHTESVLRKFAQWHAASAVRVDLKGPYEEKYTNGFFKSK
EIMNFFCDRSAKILLNNIDQYDGHAAYIKDLQSVSEKLFDIYNDIKEPKS
DEFNALNHGDGWSNNIMFQYNDKNEISNTYFVDLQLPKWGSVAQDLYYFL
LSSTSLDIKTEKFDYFVWFYHSELVKHLKLLNYSKKLPTLRSIRNALNKY
SGWAFICSISVMGVVLLDPTDDADFDKIISNEHSNFTNSIYTNPRYRRHM
KVVLPWLQHRGALE*
BS16930.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10560-PA | 414 | CG10560-PA | 1..414 | 1..414 | 2185 | 100 | Plus |
CG10553-PA | 414 | CG10553-PA | 1..414 | 1..414 | 1575 | 68.4 | Plus |
CG10562-PA | 405 | CG10562-PA | 6..404 | 17..414 | 1027 | 49.9 | Plus |
CHKov1-PE | 410 | CG10618-PE | 6..408 | 17..414 | 1018 | 48.4 | Plus |
CG10559-PB | 415 | CG10559-PB | 9..414 | 16..414 | 926 | 44.8 | Plus |