Clone BS16930 Report

Search the DGRC for BS16930

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:169
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCG10560-RA
Protein status:BS16930.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16930.3prime Sequence

834 bp (744 high quality bases) assembled on 2007-05-15

> BS16930.3prime
ATGGTCTAGAAAGCTTTTACTCCAAGGCACCACGATGCTGCAGCCAAGGT
AAGACAACTTTCATATGCCTGCGGTATCTGGGATTGGTGTAGATGGAATT
CGTAAAGTTTGAATGCTCGTTCGAAATGATCTTATCGAAATCAGCATCAT
CTGTGGGGTCCAGCAGAACGACTCCCATGACGGATATAGAGCAAATGAAG
GCCCATCCACTGTACTTGTTAAGAGCATTGCGAATGCTTCTTAAAGTTGG
CAGTTTCTTAGAGTAGTTCAGAAGTTTGAGGTGTTTCACCAACTCTGAGT
GGTAGAACCAGACGAAATAGTCGAATTTCTCCGTTTTAATGTCCAGGCTG
GTCGATGAAAGCAAGAAATAATACAAATCCTGCGCAACTGATCCCCACTT
CGGCAGTTGAAGATCCACAAAGTAGGTATTTGATATCTCGTTTTTGTCGT
TGTACTGGAACATAATGTTGTTAGACCAACCATCGCCATGGTTGAGGGCA
TTGAACTCGTCGGATTTTGGTTCCTTAATATCATTATATATATCGAATAA
CTTTTCTGAAACACTTTGCAAATCCTTTATGTAAGCTGCATGTCCATCGT
ACTGATCGATATTATTTAGCAAAATTTTAGCGCTGCGATCGCAGAAAAAG
TTCATGATTTCTTTCGATTTGAAAAAACCATTGGTATACTTTTCTTCGTA
AGGGCCCTTGAGGTCCACGCGAACTGCAGAAGCCGCATGCCATTGGGCGA
ACTTTCTCAGGACACTTTCGGTGTGAGCTTGGTCCAAGCCCTGCAGGCGG
TCTACATTCTTGAATCCTCGAGGCCTGAGATCCT

BS16930.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG10560-PA 1245 CG10560-RA 428..1245 834..17 4090 100 Minus
CG10553-PA 1245 CG10553-RA 769..812 493..450 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10560-RA 1367 CG10560-RA 473..1292 834..15 4100 100 Minus
CG10553-RA 1442 CG10553-RA 465..1108 834..191 430 72.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25318875..25319242 202..569 1840 100 Plus
3R 32079331 3R 25319305..25319570 569..834 1330 100 Plus
3R 32079331 3R 25318625..25318812 15..202 940 100 Plus
3R 32079331 3R 25316866..25317156 203..493 375 75.3 Plus
3R 32079331 3R 25317396..25317558 672..834 275 77.9 Plus
Blast to na_te.dros performed on 2015-02-12 10:06:18 has no hits.

BS16930.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:40:30 Download gff for BS16930.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10560-PA 428..1245 17..834 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:50 Download gff for BS16930.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10560-RA 473..1296 9..834 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:04:36 Download gff for BS16930.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10560-RA 473..1296 9..834 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:04:36 Download gff for BS16930.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25319305..25319570 569..834 100   Plus
3R 25318621..25318811 9..201 98 <- Plus
3R 25318875..25319241 202..568 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:50 Download gff for BS16930.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21144343..21144533 9..201 98 <- Plus
arm_3R 21144597..21144963 202..568 100 <- Plus
arm_3R 21145027..21145292 569..834 100   Plus

BS16930.5prime Sequence

820 bp (740 high quality bases) assembled on 2007-05-15

> BS16930.5prime
GAAGTTATCAGTCGACATGCCACCCCAGACAAACGATGAAAATGTTTGCG
AGCGAGAGGTTCCAATTCCGGGCTGGGTGAAACCAGAAGTCTTTGAGGAC
CTGCTCAAGGATAATGTCAAGGATTATAAGAAGACCAAGGCCCTAAGGGC
CAAAGCAGGAGTCGCTGCTGGCGAAAACTATGCCACCATAATGCTGAGAC
TGGAACTAGATGTGGAAACGAAGGACAAATCGGAAGTAACCAAAGCATTC
ATGCTAAAAACTCCCCACGACACTGACGCATATCGCAAGCTTCTTCAAGA
AACGAATATCTTCGATGTGGAGCGCGGAATGTATTTGGTAGTGGTTCCCG
AGCTGGAGCAAATGTACCGGGATGTGGGCTTGGAGGTAAAGTTTGGGGCT
GAGGCCTACGAAATAAAGGTGAGCGAGAACTATGTTCTACTGGAGGATCT
CAGGCCTCGAGGATTCAAGAATGTAGACCGCCTGCAGGGCTTGGACCAAG
CTCACACCGAAAGTGTCCTGAGAAAGTTCGCCCAATGGCATGCGGCTTCT
GCAGTTCGCGTGGACCTCAAGGGCCCTTACGAAGAAAAGTATACCAATGG
TTTTTTCAAATCGAAAGAAATCATGAACTTTTTCTGCGATCGCAGCGCTA
AAATTTTGCTAAATAATATCGATCAGTACGATGGACATGCAGCTTACATA
AAGGATTTGCAAAGTGTTTCAGAAAAGTTATTCGATATATATAATGATAT
TAAGGAACCAAAATCCGACGAGTTNCATGCCCTCAACCATGGCGATGGTT
GGTCTAACAACATTATGTTC

BS16930.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10560-PA 1245 CG10560-RA 1..804 17..820 3976 99.7 Plus
CG10553-PA 1245 CG10553-RA 290..371 306..387 185 89 Plus
CG10553-PA 1245 CG10553-RA 139..179 155..195 180 97.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10560-RA 1367 CG10560-RA 46..849 17..820 3994 99.8 Plus
CG10553-RA 1442 CG10553-RA 44..627 23..606 885 78 Plus
CG10559-RB 1435 CG10559-RB 319..523 341..545 245 74.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25319305..25319790 709..224 2430 100 Minus
3R 32079331 3R 25319849..25320056 224..17 1040 100 Minus
3R 32079331 3R 25317396..25317696 606..306 605 80.1 Minus
3R 32079331 3R 25319131..25319242 820..709 534 98.2 Minus
3R 32079331 3R 25317878..25318068 213..23 325 78 Minus
3R 32079331 3R 25315538..25315742 545..341 245 74.6 Minus
Blast to na_te.dros performed on 2015-02-13 06:06:28 has no hits.

BS16930.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:33:54 Download gff for BS16930.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10560-PA 1..804 17..820 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:49:07 Download gff for BS16930.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10560-RA 46..849 17..820 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:10 Download gff for BS16930.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10560-RA 46..849 17..820 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:10 Download gff for BS16930.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25319131..25319241 710..820 98 <- Minus
3R 25319305..25319789 225..709 100 <- Minus
3R 25319849..25320056 17..224 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:49:07 Download gff for BS16930.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21144853..21144963 710..820 98 <- Minus
arm_3R 21145027..21145511 225..709 100 <- Minus
arm_3R 21145571..21145778 17..224 100   Minus

BS16930.complete Sequence

1277 bp assembled on 2007-05-07

GenBank Submission: FJ638212

> BS16930.complete
GAAGTTATCAGTCGACATGCCACCCCAGACAAACGATGAAAATGTTTGCG
AGCGAGAGGTTCCAATTCCGGGCTGGGTGAAACCAGAAGTCTTTGAGGAC
CTGCTCAAGGATAATGTCAAGGATTATAAGAAGACCAAGGCCCTAAGGGC
CAAAGCAGGAGTCGCTGCTGGCGAAAACTATGCCACCATAATGCTGAGAC
TGGAACTAGATGTGGAAACGAAGGACAAATCGGAAGTAACCAAAGCATTC
ATGCTAAAAACTCCCCACGACACTGACGCATATCGCAAGCTTCTTCAAGA
AACGAATATCTTCGATGTGGAGCGCGGAATGTATTTGGTAGTGGTTCCCG
AGCTGGAGCAAATGTACCGGGATGTGGGCTTGGAGGTAAAGTTTGGGGCT
GAGGCCTACGAAATAAAGGTGAGCGAGAACTATGTTCTACTGGAGGATCT
CAGGCCTCGAGGATTCAAGAATGTAGACCGCCTGCAGGGCTTGGACCAAG
CTCACACCGAAAGTGTCCTGAGAAAGTTCGCCCAATGGCATGCGGCTTCT
GCAGTTCGCGTGGACCTCAAGGGCCCTTACGAAGAAAAGTATACCAATGG
TTTTTTCAAATCGAAAGAAATCATGAACTTTTTCTGCGATCGCAGCGCTA
AAATTTTGCTAAATAATATCGATCAGTACGATGGACATGCAGCTTACATA
AAGGATTTGCAAAGTGTTTCAGAAAAGTTATTCGATATATATAATGATAT
TAAGGAACCAAAATCCGACGAGTTCAATGCCCTCAACCATGGCGATGGTT
GGTCTAACAACATTATGTTCCAGTACAACGACAAAAACGAGATATCAAAT
ACCTACTTTGTGGATCTTCAACTGCCGAAGTGGGGATCAGTTGCGCAGGA
TTTGTATTATTTCTTGCTTTCATCGACCAGCCTGGACATTAAAACGGAGA
AATTCGACTATTTCGTCTGGTTCTACCACTCAGAGTTGGTGAAACACCTC
AAACTTCTGAACTACTCTAAGAAACTGCCAACTTTAAGAAGCATTCGCAA
TGCTCTTAACAAGTACAGTGGATGGGCCTTCATTTGCTCTATATCCGTCA
TGGGAGTCGTTCTGCTGGACCCCACAGATGATGCTGATTTCGATAAGATC
ATTTCGAACGAGCATTCAAACTTTACGAATTCCATCTACACCAATCCCAG
ATACCGCAGGCATATGAAAGTTGTCTTACCTTGGCTGCAGCATCGTGGTG
CCTTGGAGTAAAAGCTTTCTAGACCAT

BS16930.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10560-RA 1245 CG10560-PA 1..1245 17..1261 6225 100 Plus
CG10553-RA 1245 CG10553-PA 7..590 23..606 835 76.2 Plus
CG10553-RA 1245 CG10553-PA 769..1071 785..1087 390 75.2 Plus
CG10559-RB 1248 CG10559-PB 307..511 341..545 245 74.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:19:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10560-RA 1367 CG10560-RA 46..1292 17..1263 6235 100 Plus
CG10553-RA 1442 CG10553-RA 44..627 23..606 835 76.2 Plus
CG10553-RA 1442 CG10553-RA 806..1108 785..1087 390 75.2 Plus
CG10559-RB 1435 CG10559-RB 319..523 341..545 245 74.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25319305..25319790 709..224 2430 100 Minus
3R 32079331 3R 25318875..25319242 1076..709 1840 100 Minus
3R 32079331 3R 25319849..25320056 224..17 1040 100 Minus
3R 32079331 3R 25318625..25318812 1263..1076 940 100 Minus
3R 32079331 3R 25317396..25317696 606..306 605 80.1 Minus
3R 32079331 3R 25316866..25317156 1075..785 375 75.3 Minus
3R 32079331 3R 25317878..25318068 213..23 325 78 Minus
3R 32079331 3R 25315538..25315742 545..341 245 74.6 Minus
Blast to na_te.dros performed on 2014-11-28 00:19:41 has no hits.

BS16930.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:28 Download gff for BS16930.complete
Subject Subject Range Query Range Percent Splice Strand
CG10560-RA 1..1245 17..1261 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:27 Download gff for BS16930.complete
Subject Subject Range Query Range Percent Splice Strand
CG10560-RA 24..1274 17..1269 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:22:27 Download gff for BS16930.complete
Subject Subject Range Query Range Percent Splice Strand
CG10560-RA 46..1288 17..1259 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:28 Download gff for BS16930.complete
Subject Subject Range Query Range Percent Splice Strand
CG10560-RA 24..1274 17..1269 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:00 Download gff for BS16930.complete
Subject Subject Range Query Range Percent Splice Strand
CG10560-RA 46..1288 17..1259 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:00 Download gff for BS16930.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25318629..25318811 1077..1259 100 <- Minus
3R 25318875..25319241 710..1076 100 <- Minus
3R 25319305..25319789 225..709 100 <- Minus
3R 25319849..25320056 17..224 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:22:27 Download gff for BS16930.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21144351..21144533 1077..1259 100 <- Minus
arm_3R 21144597..21144963 710..1076 100 <- Minus
arm_3R 21145027..21145511 225..709 100 <- Minus
arm_3R 21145571..21145778 17..224 100   Minus

BS16930.pep Sequence

Translation from 16 to 1260

> BS16930.pep
MPPQTNDENVCEREVPIPGWVKPEVFEDLLKDNVKDYKKTKALRAKAGVA
AGENYATIMLRLELDVETKDKSEVTKAFMLKTPHDTDAYRKLLQETNIFD
VERGMYLVVVPELEQMYRDVGLEVKFGAEAYEIKVSENYVLLEDLRPRGF
KNVDRLQGLDQAHTESVLRKFAQWHAASAVRVDLKGPYEEKYTNGFFKSK
EIMNFFCDRSAKILLNNIDQYDGHAAYIKDLQSVSEKLFDIYNDIKEPKS
DEFNALNHGDGWSNNIMFQYNDKNEISNTYFVDLQLPKWGSVAQDLYYFL
LSSTSLDIKTEKFDYFVWFYHSELVKHLKLLNYSKKLPTLRSIRNALNKY
SGWAFICSISVMGVVLLDPTDDADFDKIISNEHSNFTNSIYTNPRYRRHM
KVVLPWLQHRGALE*

BS16930.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG10560-PA 414 CG10560-PA 1..414 1..414 2185 100 Plus
CG10553-PA 414 CG10553-PA 1..414 1..414 1575 68.4 Plus
CG10562-PA 405 CG10562-PA 6..404 17..414 1027 49.9 Plus
CHKov1-PE 410 CG10618-PE 6..408 17..414 1018 48.4 Plus
CG10559-PB 415 CG10559-PB 9..414 16..414 926 44.8 Plus