Clone BS16937 Report

Search the DGRC for BS16937

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:169
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptP5CDh2-RA
Protein status:BS16937.pep: full length peptide match
Sequenced Size:1877

Clone Sequence Records

BS16937.3prime Sequence

838 bp (825 high quality bases) assembled on 2007-05-15

> BS16937.3prime
ATGGTCTAGAAAGCTTCTACACCACCTTGTTGCCATCACTGTTGAAGTGC
CCAAAGGAGGATTCATCCTGGGAGACCATATCACTTTGTGCTATGCCCTG
CTCCTGATCATTTATTTGCATATATGGATAAAAGATATTCCTGTGTGTCT
TGTAGGACTCTTTAATCACCTGGGGCGATGTCCATCGCAGCAGGGAGTGG
GGAGTGCCCAACTTATCACTGGTGCCGGTCATGTGTCCCGCACCAAAAGG
CTGCTGACCCACCATCAATCCGGTGGACTTGTCATTCACATTTAAGTTGC
CCACATTGACTCTGAAGGCATCGTATGCTTCCTCGATGAAGTTCTGATCC
TGGGCAAACACCGAACCTGTCAATCCATGATTAATCTGGGCCACCTTTTC
CATAGTCTCCTTGAGCTTATGGTCTGGATAGACATAGACACCGAGAATGG
GTGCCAGTAGCTCTTCCCGACATATGATATTGTCCAGATCCTTGACCAGT
ACCACCGTTGGATCTACGTAATAGCCACGTCGCTTGTCGCAGCTTCCTCC
AACGAGGATCTGGCAACTGGGACTCTGGTCGATGTACCTTAGCCACATGT
AGATGCGATCGTAGGCCCGTCGGTTGATCACCGCCGAGCAAAAACTATCG
CAATACGTGGCATCTTGTCGCACGACCAGAGATGCAGTGATCTCAAGAAG
AGGTTCTCGTATGTGATTCTGCCACAGGGATTCCGGAACGTACAACATCG
AACAGGAGGAGCACTTCTGGCCGGCGTACTCAAAGGCAGCTCTTATCGTG
CAGGCCACCGCCGTTTCCGGTTCCGCCGAGGAGTGTAC

BS16937.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG33092-PA 1845 CG33092-RA 1024..1845 838..17 4110 100 Minus
CG33092-PB 1845 CG33092-RB 1024..1845 838..17 4110 100 Minus
CG33092-PC 1845 CG33092-RC 1024..1845 838..17 4110 100 Minus
CG33092-PD 1830 CG33092-RD 1009..1830 838..17 4110 100 Minus
CG33092-PE 1830 CG33092-RE 1009..1830 838..17 4110 100 Minus
CG33092-PF 1845 CG33092-RF 1024..1845 838..17 4110 100 Minus
CG33092-PG 1827 CG33092-RG 1006..1827 838..17 4110 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
P5CDh2-RG 2354 CG33092-RG 1468..2289 838..17 4110 100 Minus
P5CDh2-RE 2357 CG33092-RE 1471..2292 838..17 4110 100 Minus
P5CDh2-RD 2291 CG33092-RD 1405..2226 838..17 4110 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21879810..21880631 838..17 4110 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:16:26 has no hits.

BS16937.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:01 Download gff for BS16937.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33092-PG 1006..1827 17..838 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:51:02 Download gff for BS16937.3prime
Subject Subject Range Query Range Percent Splice Strand
P5CDh2-RD 1405..2226 17..838 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:05:15 Download gff for BS16937.3prime
Subject Subject Range Query Range Percent Splice Strand
P5CDh2-RD 1405..2226 17..838 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:05:15 Download gff for BS16937.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21879810..21880631 17..838 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:51:02 Download gff for BS16937.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17705532..17706353 17..838 100   Minus

BS16937.5prime Sequence

893 bp (807 high quality bases) assembled on 2007-05-15

> BS16937.5prime
GAAGTTATCAGTCGACATGATGTCCAAGGTGGCTCATGGCATTGTTTCAA
ATATGCGGTCAATACTTCCGAGGCTCGAGGCTTCAGTAAAAGGCGGCCTC
GTGTCTGTTAGAAGTACCAGCAAGAGACCCGAGCTATCCGAGCACTTTAC
GCTGGATGAGATGGTGGCCAACGAGAAGCTGCTTCAGTATGACGAGGGCT
CAAAGGAACGCACGGAACTGGAAACCGCCCTGCTGGGCGTTCTCAATAGG
GTAGAGCACGTTCCCATCGTTATTAACGGCCAGGAGTTCCAGGCCAAGGA
GGACTTCCAACAGGTTCTGCCCTACGACATCCAACAGCCCATTGCCCATT
ACGGTCATGCCCACCGCGTGCTCATCCAAATGGCCATCGATAAGAGTGTG
GAGGCGCAGGTGAAGTGGGACAAGGTCAGGCTTAGTGATCGAATTGATAT
TTGGGAGCGGGCAGCGATGCTAATTGCCGGAAGATACCGCTACAACATCA
TTGCGGCCACGATGTTGGGCCAGGGAAAAACGCTGCGCCAGGCGGAGATG
GATGTAGCCGAGCTGGTGGACTTTATGCGCATTAATCCCGTCTTCCTGCG
TGAGCTGGCCAACTACGAACCCATTAGAGACATCCAAAACAATTGCAGGA
ACTCCATGCGGTTGAGAGGACTTTCGGGATTTGTGGCTGCCATCAGTCCG
TTTAACTTTACGGGTATCGCCGCCAATCTGGCCTATACGCCTGCCTTAAT
GGGCAACTCGGTGATCTGGAAGCCCTCTGACTCGGCCATCCTGTCCAACT
ATTTCGTTTTCAAGGCCCTGCGGGAGGCTGGAGTGCCCGATGGTGTGGTG
AACTTTGTGCCCGCCGAGGAGACAACGTTTGCATCCGTAGTGA

BS16937.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG33092-PA 1845 CG33092-RA 1..877 17..893 4385 100 Plus
CG33092-PB 1845 CG33092-RB 1..877 17..893 4385 100 Plus
CG33092-PC 1845 CG33092-RC 1..877 17..893 4385 100 Plus
CG33092-PF 1845 CG33092-RF 1..877 17..893 4385 100 Plus
CG33092-PD 1830 CG33092-RD 80..862 111..893 3915 100 Plus
CG33092-PE 1830 CG33092-RE 80..862 111..893 3915 100 Plus
CG33092-PG 1827 CG33092-RG 80..859 114..893 3900 100 Plus
CG33092-PD 1830 CG33092-RD 1..80 17..96 400 100 Plus
CG33092-PE 1830 CG33092-RE 1..80 17..96 400 100 Plus
CG33092-PG 1827 CG33092-RG 1..80 17..96 400 100 Plus
CG34148-PA 318 CG34148-RA 12..91 96..17 400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:32
Subject Length Description Subject Range Query Range Score Percent Strand
P5CDh2-RC 2306 CG33092-RC 397..1273 17..893 4385 100 Plus
P5CDh2-RB 2312 CG33092-RB 403..1279 17..893 4385 100 Plus
P5CDh2-RA 2472 CG33092-RA 563..1439 17..893 4385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21878809..21879391 96..678 2915 100 Plus
3R 32079331 3R 21879447..21879663 677..893 1085 100 Plus
3R 32079331 3R 21878498..21878577 17..96 400 100 Plus
3L 28110227 3L 21838564..21838664 867..767 220 81.2 Minus
Blast to na_te.dros performed on 2015-02-10 21:16:28 has no hits.

BS16937.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:30:57 Download gff for BS16937.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33092-PA 1..876 17..892 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:12:37 Download gff for BS16937.5prime
Subject Subject Range Query Range Percent Splice Strand
P5CDh2-RA 463..1338 17..892 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:15 Download gff for BS16937.5prime
Subject Subject Range Query Range Percent Splice Strand
P5CDh2-RA 563..1438 17..892 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:15 Download gff for BS16937.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21878498..21878577 17..96 100 -> Plus
3R 21878810..21879390 97..677 100 -> Plus
3R 21879448..21879662 678..892 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:12:37 Download gff for BS16937.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17704220..17704299 17..96 100 -> Plus
arm_3R 17704532..17705112 97..677 100 -> Plus
arm_3R 17705170..17705384 678..892 100   Plus

BS16937.complete Sequence

1877 bp assembled on 2009-08-26

GenBank Submission: KX800412

> BS16937.complete
GAAGTTATCAGTCGACATGATGTCCAAGGTGGCTCATGGCATTGTTTCAA
ATATGCGGTCAATACTTCCGAGGCTCGAGGCTTCAGTAAAAGGCGGCCTC
GTGTCTGTTAGAAGTACCAGCAAGAGACCCGAGCTATCCGAGCACTTTAC
GCTGGATGAGATGGTGGCCAACGAGAAGCTGCTTCAGTATGACGAGGGCT
CAAAGGAACGCACGGAACTGGAAACCGCCCTGCTGGGCGTTCTCAATAGG
GTAGAGCACGTTCCCATCGTTATTAACGGCCAGGAGTTCCAGGCCAAGGA
GGACTTCCAACAGGTTCTGCCCTACGACATCCAACAGCCCATTGCCCATT
ACGGTCATGCCCACCGCGTGCTCATCCAAATGGCCATCGATAAGAGTGTG
GAGGCGCAGGTGAAGTGGGACAAGGTCAGGCTTAGTGATCGAATTGATAT
TTGGGAGCGGGCAGCGATGCTAATTGCCGGAAGATACCGCTACAACATCA
TTGCGGCCACGATGTTGGGCCAGGGAAAAACGCTGCGCCAGGCGGAGATG
GATGTAGCCGAGCTGGTGGACTTTATGCGCATTAATCCCGTCTTCCTGCG
TGAGCTGGCCAACTACGAACCCATTAGAGACATCCAAAACAATTGCAGGA
ACTCCATGCGGTTGAGAGGACTTTCGGGATTTGTGGCTGCCATCAGTCCG
TTTAACTTTACGGGTATCGCCGCCAATCTGGCCTATACGCCTGCCTTAAT
GGGCAACTCGGTGATCTGGAAGCCCTCTGACTCGGCCATCCTGTCCAACT
ATTTCGTTTTCAAGGCCCTGCGGGAGGCTGGAGTGCCCGATGGTGTGGTG
AACTTTGTGCCCGCCGAGGAGACAACGTTTGCATCCGTAGTGACGCAACA
TCCGAAATTGGCGGGGATTAACTTCACTGGTACCTCAACGGTGCTCAAGG
TGCTCTGGCAACTGGTGGCCCAGAATATAAATTTCTATCAGAACTATCCC
CGTTTGGTGGGCGAGGGAGGCGGCAAGAATTTCCACTTCGTACACTCCTC
GGCGGAACCGGAAACGGCGGTGGCCTGCACGATAAGAGCTGCCTTTGAGT
ACGCCGGCCAGAAGTGCTCCTCCTGTTCGATGTTGTACGTTCCGGAATCC
CTGTGGCAGAATCACATACGAGAACCTCTTCTTGAGATCACTGCATCTCT
GGTCGTGCGACAAGATGCCACGTATTGCGATAGTTTTTGCTCGGCGGTGA
TCAACCGACGGGCCTACGATCGCATCTACATGTGGCTAAGGTACATCGAC
CAGAGTCCCAGTTGCCAGATCCTCGTTGGAGGAAGCTGCGACAAGCGACG
TGGCTATTACGTAGATCCAACGGTGGTACTGGTCAAGGATCTGGACAATA
TCATATGTCGGGAAGAGCTACTGGCACCCATTCTCGGTGTCTATGTCTAT
CCAGACCATAAGCTCAAGGAGACTATGGAAAAGGTGGCCCAGATTAATCA
TGGATTGACAGGTTCGGTGTTTGCCCAGGATCAGAACTTCATCGAGGAAG
CATACGATGCCTTCAGAGTCAATGTGGGCAACTTAAATGTGAATGACAAG
TCCACCGGATTGATGGTGGGTCAGCAGCCTTTTGGTGCGGGACACATGAC
CGGCACCAGTGATAAGTTGGGCACTCCCCACTCCCTGCTGCGATGGACAT
CGCCCCAGGTGATTAAAGAGTCCTACAAGACACACAGGAATATCTTTTAT
CCATATATGCAAATAAATGATCAGGAGCAGGGCATAGCACAAAGTGATAT
GGTCTCCCAGGATGAATCCTCCTTTGGGCACTTCAACAGTGATGGCAACA
AGGTGGTGTAGAAGCTTTCTAGACCAT

BS16937.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
P5CDh2-RC 1845 CG33092-PC 1..1845 17..1861 9225 100 Plus
P5CDh2-RB 1845 CG33092-PB 1..1845 17..1861 9225 100 Plus
P5CDh2-RA 1845 CG33092-PA 1..1845 17..1861 9225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:24
Subject Length Description Subject Range Query Range Score Percent Strand
P5CDh2-RC 2306 CG33092-RC 397..2241 17..1861 9225 100 Plus
P5CDh2-RB 2312 CG33092-RB 403..2247 17..1861 9225 100 Plus
P5CDh2-RA 2472 CG33092-RA 563..2407 17..1861 9225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21879447..21880631 677..1861 5925 100 Plus
3R 32079331 3R 21878809..21879391 96..678 2915 100 Plus
3R 32079331 3R 21878498..21878577 17..96 400 100 Plus
3L 28110227 3L 21838564..21838664 867..767 220 81.2 Minus
Blast to na_te.dros performed on 2014-11-28 01:35:22 has no hits.

BS16937.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:31 Download gff for BS16937.complete
Subject Subject Range Query Range Percent Splice Strand
CG33092-RC 397..2241 17..1861 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:57 Download gff for BS16937.complete
Subject Subject Range Query Range Percent Splice Strand
P5CDh2-RA 463..2307 17..1861 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:08 Download gff for BS16937.complete
Subject Subject Range Query Range Percent Splice Strand
P5CDh2-RA 563..2407 17..1861 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:08 Download gff for BS16937.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21878498..21878577 17..96 100 -> Plus
3R 21878810..21879390 97..677 100 -> Plus
3R 21879448..21880631 678..1861 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:57 Download gff for BS16937.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17704220..17704299 17..96 100 -> Plus
arm_3R 17704532..17705112 97..677 100 -> Plus
arm_3R 17705170..17706353 678..1861 100   Plus

BS16937.pep Sequence

Translation from 16 to 1860

> BS16937.pep
MMSKVAHGIVSNMRSILPRLEASVKGGLVSVRSTSKRPELSEHFTLDEMV
ANEKLLQYDEGSKERTELETALLGVLNRVEHVPIVINGQEFQAKEDFQQV
LPYDIQQPIAHYGHAHRVLIQMAIDKSVEAQVKWDKVRLSDRIDIWERAA
MLIAGRYRYNIIAATMLGQGKTLRQAEMDVAELVDFMRINPVFLRELANY
EPIRDIQNNCRNSMRLRGLSGFVAAISPFNFTGIAANLAYTPALMGNSVI
WKPSDSAILSNYFVFKALREAGVPDGVVNFVPAEETTFASVVTQHPKLAG
INFTGTSTVLKVLWQLVAQNINFYQNYPRLVGEGGGKNFHFVHSSAEPET
AVACTIRAAFEYAGQKCSSCSMLYVPESLWQNHIREPLLEITASLVVRQD
ATYCDSFCSAVINRRAYDRIYMWLRYIDQSPSCQILVGGSCDKRRGYYVD
PTVVLVKDLDNIICREELLAPILGVYVYPDHKLKETMEKVAQINHGLTGS
VFAQDQNFIEEAYDAFRVNVGNLNVNDKSTGLMVGQQPFGAGHMTGTSDK
LGTPHSLLRWTSPQVIKESYKTHRNIFYPYMQINDQEQGIAQSDMVSQDE
SSFGHFNSDGNKVV*

BS16937.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
P5CDh2-PC 614 CG33092-PC 1..614 1..614 3189 100 Plus
P5CDh2-PB 614 CG33092-PB 1..614 1..614 3189 100 Plus
P5CDh2-PA 614 CG33092-PA 1..614 1..614 3189 100 Plus
P5CDh2-PE 609 CG33092-PE 1..609 1..614 3152 99.2 Plus
P5CDh2-PD 609 CG33092-PD 1..609 1..614 3152 99.2 Plus