Clone Sequence Records
BS16937.3prime Sequence
838 bp (825 high quality bases) assembled on 2007-05-15
> BS16937.3prime
ATGGTCTAGAAAGCTTCTACACCACCTTGTTGCCATCACTGTTGAAGTGC
CCAAAGGAGGATTCATCCTGGGAGACCATATCACTTTGTGCTATGCCCTG
CTCCTGATCATTTATTTGCATATATGGATAAAAGATATTCCTGTGTGTCT
TGTAGGACTCTTTAATCACCTGGGGCGATGTCCATCGCAGCAGGGAGTGG
GGAGTGCCCAACTTATCACTGGTGCCGGTCATGTGTCCCGCACCAAAAGG
CTGCTGACCCACCATCAATCCGGTGGACTTGTCATTCACATTTAAGTTGC
CCACATTGACTCTGAAGGCATCGTATGCTTCCTCGATGAAGTTCTGATCC
TGGGCAAACACCGAACCTGTCAATCCATGATTAATCTGGGCCACCTTTTC
CATAGTCTCCTTGAGCTTATGGTCTGGATAGACATAGACACCGAGAATGG
GTGCCAGTAGCTCTTCCCGACATATGATATTGTCCAGATCCTTGACCAGT
ACCACCGTTGGATCTACGTAATAGCCACGTCGCTTGTCGCAGCTTCCTCC
AACGAGGATCTGGCAACTGGGACTCTGGTCGATGTACCTTAGCCACATGT
AGATGCGATCGTAGGCCCGTCGGTTGATCACCGCCGAGCAAAAACTATCG
CAATACGTGGCATCTTGTCGCACGACCAGAGATGCAGTGATCTCAAGAAG
AGGTTCTCGTATGTGATTCTGCCACAGGGATTCCGGAACGTACAACATCG
AACAGGAGGAGCACTTCTGGCCGGCGTACTCAAAGGCAGCTCTTATCGTG
CAGGCCACCGCCGTTTCCGGTTCCGCCGAGGAGTGTAC
BS16937.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:36:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33092-PA | 1845 | CG33092-RA | 1024..1845 | 838..17 | 4110 | 100 | Minus |
CG33092-PB | 1845 | CG33092-RB | 1024..1845 | 838..17 | 4110 | 100 | Minus |
CG33092-PC | 1845 | CG33092-RC | 1024..1845 | 838..17 | 4110 | 100 | Minus |
CG33092-PD | 1830 | CG33092-RD | 1009..1830 | 838..17 | 4110 | 100 | Minus |
CG33092-PE | 1830 | CG33092-RE | 1009..1830 | 838..17 | 4110 | 100 | Minus |
CG33092-PF | 1845 | CG33092-RF | 1024..1845 | 838..17 | 4110 | 100 | Minus |
CG33092-PG | 1827 | CG33092-RG | 1006..1827 | 838..17 | 4110 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:16:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P5CDh2-RG | 2354 | CG33092-RG | 1468..2289 | 838..17 | 4110 | 100 | Minus |
P5CDh2-RE | 2357 | CG33092-RE | 1471..2292 | 838..17 | 4110 | 100 | Minus |
P5CDh2-RD | 2291 | CG33092-RD | 1405..2226 | 838..17 | 4110 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:16:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21879810..21880631 | 838..17 | 4110 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:16:26 has no hits.
BS16937.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:01 Download gff for
BS16937.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33092-PG | 1006..1827 | 17..838 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:51:02 Download gff for
BS16937.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P5CDh2-RD | 1405..2226 | 17..838 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:05:15 Download gff for
BS16937.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P5CDh2-RD | 1405..2226 | 17..838 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:05:15 Download gff for
BS16937.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21879810..21880631 | 17..838 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:51:02 Download gff for
BS16937.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17705532..17706353 | 17..838 | 100 | | Minus |
BS16937.5prime Sequence
893 bp (807 high quality bases) assembled on 2007-05-15
> BS16937.5prime
GAAGTTATCAGTCGACATGATGTCCAAGGTGGCTCATGGCATTGTTTCAA
ATATGCGGTCAATACTTCCGAGGCTCGAGGCTTCAGTAAAAGGCGGCCTC
GTGTCTGTTAGAAGTACCAGCAAGAGACCCGAGCTATCCGAGCACTTTAC
GCTGGATGAGATGGTGGCCAACGAGAAGCTGCTTCAGTATGACGAGGGCT
CAAAGGAACGCACGGAACTGGAAACCGCCCTGCTGGGCGTTCTCAATAGG
GTAGAGCACGTTCCCATCGTTATTAACGGCCAGGAGTTCCAGGCCAAGGA
GGACTTCCAACAGGTTCTGCCCTACGACATCCAACAGCCCATTGCCCATT
ACGGTCATGCCCACCGCGTGCTCATCCAAATGGCCATCGATAAGAGTGTG
GAGGCGCAGGTGAAGTGGGACAAGGTCAGGCTTAGTGATCGAATTGATAT
TTGGGAGCGGGCAGCGATGCTAATTGCCGGAAGATACCGCTACAACATCA
TTGCGGCCACGATGTTGGGCCAGGGAAAAACGCTGCGCCAGGCGGAGATG
GATGTAGCCGAGCTGGTGGACTTTATGCGCATTAATCCCGTCTTCCTGCG
TGAGCTGGCCAACTACGAACCCATTAGAGACATCCAAAACAATTGCAGGA
ACTCCATGCGGTTGAGAGGACTTTCGGGATTTGTGGCTGCCATCAGTCCG
TTTAACTTTACGGGTATCGCCGCCAATCTGGCCTATACGCCTGCCTTAAT
GGGCAACTCGGTGATCTGGAAGCCCTCTGACTCGGCCATCCTGTCCAACT
ATTTCGTTTTCAAGGCCCTGCGGGAGGCTGGAGTGCCCGATGGTGTGGTG
AACTTTGTGCCCGCCGAGGAGACAACGTTTGCATCCGTAGTGA
BS16937.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:30:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33092-PA | 1845 | CG33092-RA | 1..877 | 17..893 | 4385 | 100 | Plus |
CG33092-PB | 1845 | CG33092-RB | 1..877 | 17..893 | 4385 | 100 | Plus |
CG33092-PC | 1845 | CG33092-RC | 1..877 | 17..893 | 4385 | 100 | Plus |
CG33092-PF | 1845 | CG33092-RF | 1..877 | 17..893 | 4385 | 100 | Plus |
CG33092-PD | 1830 | CG33092-RD | 80..862 | 111..893 | 3915 | 100 | Plus |
CG33092-PE | 1830 | CG33092-RE | 80..862 | 111..893 | 3915 | 100 | Plus |
CG33092-PG | 1827 | CG33092-RG | 80..859 | 114..893 | 3900 | 100 | Plus |
CG33092-PD | 1830 | CG33092-RD | 1..80 | 17..96 | 400 | 100 | Plus |
CG33092-PE | 1830 | CG33092-RE | 1..80 | 17..96 | 400 | 100 | Plus |
CG33092-PG | 1827 | CG33092-RG | 1..80 | 17..96 | 400 | 100 | Plus |
CG34148-PA | 318 | CG34148-RA | 12..91 | 96..17 | 400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P5CDh2-RC | 2306 | CG33092-RC | 397..1273 | 17..893 | 4385 | 100 | Plus |
P5CDh2-RB | 2312 | CG33092-RB | 403..1279 | 17..893 | 4385 | 100 | Plus |
P5CDh2-RA | 2472 | CG33092-RA | 563..1439 | 17..893 | 4385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21878809..21879391 | 96..678 | 2915 | 100 | Plus |
3R | 32079331 | 3R | 21879447..21879663 | 677..893 | 1085 | 100 | Plus |
3R | 32079331 | 3R | 21878498..21878577 | 17..96 | 400 | 100 | Plus |
3L | 28110227 | 3L | 21838564..21838664 | 867..767 | 220 | 81.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:16:28 has no hits.
BS16937.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:30:57 Download gff for
BS16937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33092-PA | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:12:37 Download gff for
BS16937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P5CDh2-RA | 463..1338 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:15 Download gff for
BS16937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P5CDh2-RA | 563..1438 | 17..892 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:15 Download gff for
BS16937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21878498..21878577 | 17..96 | 100 | -> | Plus |
3R | 21878810..21879390 | 97..677 | 100 | -> | Plus |
3R | 21879448..21879662 | 678..892 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:12:37 Download gff for
BS16937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17704220..17704299 | 17..96 | 100 | -> | Plus |
arm_3R | 17704532..17705112 | 97..677 | 100 | -> | Plus |
arm_3R | 17705170..17705384 | 678..892 | 100 | | Plus |
BS16937.complete Sequence
1877 bp assembled on 2009-08-26
GenBank Submission: KX800412
> BS16937.complete
GAAGTTATCAGTCGACATGATGTCCAAGGTGGCTCATGGCATTGTTTCAA
ATATGCGGTCAATACTTCCGAGGCTCGAGGCTTCAGTAAAAGGCGGCCTC
GTGTCTGTTAGAAGTACCAGCAAGAGACCCGAGCTATCCGAGCACTTTAC
GCTGGATGAGATGGTGGCCAACGAGAAGCTGCTTCAGTATGACGAGGGCT
CAAAGGAACGCACGGAACTGGAAACCGCCCTGCTGGGCGTTCTCAATAGG
GTAGAGCACGTTCCCATCGTTATTAACGGCCAGGAGTTCCAGGCCAAGGA
GGACTTCCAACAGGTTCTGCCCTACGACATCCAACAGCCCATTGCCCATT
ACGGTCATGCCCACCGCGTGCTCATCCAAATGGCCATCGATAAGAGTGTG
GAGGCGCAGGTGAAGTGGGACAAGGTCAGGCTTAGTGATCGAATTGATAT
TTGGGAGCGGGCAGCGATGCTAATTGCCGGAAGATACCGCTACAACATCA
TTGCGGCCACGATGTTGGGCCAGGGAAAAACGCTGCGCCAGGCGGAGATG
GATGTAGCCGAGCTGGTGGACTTTATGCGCATTAATCCCGTCTTCCTGCG
TGAGCTGGCCAACTACGAACCCATTAGAGACATCCAAAACAATTGCAGGA
ACTCCATGCGGTTGAGAGGACTTTCGGGATTTGTGGCTGCCATCAGTCCG
TTTAACTTTACGGGTATCGCCGCCAATCTGGCCTATACGCCTGCCTTAAT
GGGCAACTCGGTGATCTGGAAGCCCTCTGACTCGGCCATCCTGTCCAACT
ATTTCGTTTTCAAGGCCCTGCGGGAGGCTGGAGTGCCCGATGGTGTGGTG
AACTTTGTGCCCGCCGAGGAGACAACGTTTGCATCCGTAGTGACGCAACA
TCCGAAATTGGCGGGGATTAACTTCACTGGTACCTCAACGGTGCTCAAGG
TGCTCTGGCAACTGGTGGCCCAGAATATAAATTTCTATCAGAACTATCCC
CGTTTGGTGGGCGAGGGAGGCGGCAAGAATTTCCACTTCGTACACTCCTC
GGCGGAACCGGAAACGGCGGTGGCCTGCACGATAAGAGCTGCCTTTGAGT
ACGCCGGCCAGAAGTGCTCCTCCTGTTCGATGTTGTACGTTCCGGAATCC
CTGTGGCAGAATCACATACGAGAACCTCTTCTTGAGATCACTGCATCTCT
GGTCGTGCGACAAGATGCCACGTATTGCGATAGTTTTTGCTCGGCGGTGA
TCAACCGACGGGCCTACGATCGCATCTACATGTGGCTAAGGTACATCGAC
CAGAGTCCCAGTTGCCAGATCCTCGTTGGAGGAAGCTGCGACAAGCGACG
TGGCTATTACGTAGATCCAACGGTGGTACTGGTCAAGGATCTGGACAATA
TCATATGTCGGGAAGAGCTACTGGCACCCATTCTCGGTGTCTATGTCTAT
CCAGACCATAAGCTCAAGGAGACTATGGAAAAGGTGGCCCAGATTAATCA
TGGATTGACAGGTTCGGTGTTTGCCCAGGATCAGAACTTCATCGAGGAAG
CATACGATGCCTTCAGAGTCAATGTGGGCAACTTAAATGTGAATGACAAG
TCCACCGGATTGATGGTGGGTCAGCAGCCTTTTGGTGCGGGACACATGAC
CGGCACCAGTGATAAGTTGGGCACTCCCCACTCCCTGCTGCGATGGACAT
CGCCCCAGGTGATTAAAGAGTCCTACAAGACACACAGGAATATCTTTTAT
CCATATATGCAAATAAATGATCAGGAGCAGGGCATAGCACAAAGTGATAT
GGTCTCCCAGGATGAATCCTCCTTTGGGCACTTCAACAGTGATGGCAACA
AGGTGGTGTAGAAGCTTTCTAGACCAT
BS16937.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:35:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P5CDh2-RC | 1845 | CG33092-PC | 1..1845 | 17..1861 | 9225 | 100 | Plus |
P5CDh2-RB | 1845 | CG33092-PB | 1..1845 | 17..1861 | 9225 | 100 | Plus |
P5CDh2-RA | 1845 | CG33092-PA | 1..1845 | 17..1861 | 9225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P5CDh2-RC | 2306 | CG33092-RC | 397..2241 | 17..1861 | 9225 | 100 | Plus |
P5CDh2-RB | 2312 | CG33092-RB | 403..2247 | 17..1861 | 9225 | 100 | Plus |
P5CDh2-RA | 2472 | CG33092-RA | 563..2407 | 17..1861 | 9225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21879447..21880631 | 677..1861 | 5925 | 100 | Plus |
3R | 32079331 | 3R | 21878809..21879391 | 96..678 | 2915 | 100 | Plus |
3R | 32079331 | 3R | 21878498..21878577 | 17..96 | 400 | 100 | Plus |
3L | 28110227 | 3L | 21838564..21838664 | 867..767 | 220 | 81.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:35:22 has no hits.
BS16937.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:31 Download gff for
BS16937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33092-RC | 397..2241 | 17..1861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:57 Download gff for
BS16937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P5CDh2-RA | 463..2307 | 17..1861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:08 Download gff for
BS16937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P5CDh2-RA | 563..2407 | 17..1861 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:08 Download gff for
BS16937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21878498..21878577 | 17..96 | 100 | -> | Plus |
3R | 21878810..21879390 | 97..677 | 100 | -> | Plus |
3R | 21879448..21880631 | 678..1861 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:57 Download gff for
BS16937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17704220..17704299 | 17..96 | 100 | -> | Plus |
arm_3R | 17704532..17705112 | 97..677 | 100 | -> | Plus |
arm_3R | 17705170..17706353 | 678..1861 | 100 | | Plus |
BS16937.pep Sequence
Translation from 16 to 1860
> BS16937.pep
MMSKVAHGIVSNMRSILPRLEASVKGGLVSVRSTSKRPELSEHFTLDEMV
ANEKLLQYDEGSKERTELETALLGVLNRVEHVPIVINGQEFQAKEDFQQV
LPYDIQQPIAHYGHAHRVLIQMAIDKSVEAQVKWDKVRLSDRIDIWERAA
MLIAGRYRYNIIAATMLGQGKTLRQAEMDVAELVDFMRINPVFLRELANY
EPIRDIQNNCRNSMRLRGLSGFVAAISPFNFTGIAANLAYTPALMGNSVI
WKPSDSAILSNYFVFKALREAGVPDGVVNFVPAEETTFASVVTQHPKLAG
INFTGTSTVLKVLWQLVAQNINFYQNYPRLVGEGGGKNFHFVHSSAEPET
AVACTIRAAFEYAGQKCSSCSMLYVPESLWQNHIREPLLEITASLVVRQD
ATYCDSFCSAVINRRAYDRIYMWLRYIDQSPSCQILVGGSCDKRRGYYVD
PTVVLVKDLDNIICREELLAPILGVYVYPDHKLKETMEKVAQINHGLTGS
VFAQDQNFIEEAYDAFRVNVGNLNVNDKSTGLMVGQQPFGAGHMTGTSDK
LGTPHSLLRWTSPQVIKESYKTHRNIFYPYMQINDQEQGIAQSDMVSQDE
SSFGHFNSDGNKVV*
BS16937.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:33:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P5CDh2-PC | 614 | CG33092-PC | 1..614 | 1..614 | 3189 | 100 | Plus |
P5CDh2-PB | 614 | CG33092-PB | 1..614 | 1..614 | 3189 | 100 | Plus |
P5CDh2-PA | 614 | CG33092-PA | 1..614 | 1..614 | 3189 | 100 | Plus |
P5CDh2-PE | 609 | CG33092-PE | 1..609 | 1..614 | 3152 | 99.2 | Plus |
P5CDh2-PD | 609 | CG33092-PD | 1..609 | 1..614 | 3152 | 99.2 | Plus |