Clone Sequence Records
BS16944.3prime Sequence
892 bp (805 high quality bases) assembled on 2007-05-15
> BS16944.3prime
ATGGTCTAGAAAGCTTTCAATGTGGGGTAACAAAAATCCTCGAGTTGCGA
GCCTTGTCACTGGATGATGCCGACTCCTTGGCCTTGGGCCTTTCCGCCTT
ACTGGTGGCCACAATGGGCAAGCCGCCGTTTTCGATCATTGTCACCACAA
TCTTATTGTTCCGACTGCTTACGGTGCCACCACCACCACCGCTTGCGTAG
GATGAGTTCGCCGCCGCAGCTGAGGCTGCATTTGTGGCCGCTAGATTCTT
CTGCCGCAGGGCGTTCGATAGCCGTTGCTTGCGTTCCGCTCGGGCCTCCT
CCTTTTCCCGCTGCAACTTGGCAATAGTGGCGGGCGTGTGGCTCTTGGAG
CGCTTTAGAAATCTCATCAGTTGGCTCTTAACATTGGTGGCGGCACTTCC
ATTTCCCTGGCTTGTGGCATCGCCTATTTCCTCTGCCCTGCTGGATCTTC
GGGATATTTGAGCCTTGGTGGGTACCTCCAGGCGACGGAAGACCCCATCG
GCCATTCGGACGAAACAGCCCTCCGACATCTTGTGAAAGGAGTCGGATGG
CAGTTTGTGAAAATCGCCATTGGGACTGCGATAGTAGCAGTGATCCGTCC
GATGATAGCCATCTCCCACAATATAAAACTCATTGCGCCCCTCCTTGGGC
GCCACAGCTGCTGCTGCTGAAGCCGAGGATTCGGCAGCCAGGTCGTCAGT
CTTGGCACTTCGATCCACGGGCAGTTGGAAGGCCATTAGTTGGGTGATGC
TACTACTGCTCCCACCAGCAGCATCCTCTGCTGTAATAGGCAGGACACTA
CCCGAAGTCCCCTGCCCGGTATTAACTGGTTTCAGCTCACTGATCGTTAC
CGGACGACGTTCCGGGTTCTTGCGCATAATGCTTCCATTGCG
BS16944.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8201-PQ | 1074 | par-1-RQ | 199..1074 | 892..17 | 4380 | 100 | Minus |
CG8201-PI | 2982 | par-1-RI | 199..1053 | 892..38 | 4275 | 100 | Minus |
CG8201-PO | 2982 | par-1-RO | 199..1053 | 892..38 | 4275 | 100 | Minus |
CG8201-PJ | 2982 | par-1-RJ | 199..1053 | 892..38 | 4275 | 100 | Minus |
CG8201-PH | 2982 | par-1-RH | 199..1053 | 892..38 | 4275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:34:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
par-1-RQ | 3321 | CG8201-RQ | 809..1685 | 892..16 | 4385 | 100 | Minus |
par-1-RH | 4868 | CG8201-RH | 673..1527 | 892..38 | 4275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:33:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19464840..19465694 | 892..38 | 4275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:34:00 has no hits.
BS16944.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:10 Download gff for
BS16944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8201-PQ | 199..1074 | 17..892 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:43:57 Download gff for
BS16944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-1-RQ | 809..1691 | 7..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:33:55 Download gff for
BS16944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-1-RQ | 809..1691 | 7..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:33:55 Download gff for
BS16944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19464840..19465694 | 38..892 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:43:57 Download gff for
BS16944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15352345..15353199 | 38..892 | 100 | -> | Minus |
BS16944.5prime Sequence
848 bp (821 high quality bases) assembled on 2007-05-15
> BS16944.5prime
GAAGTTATCAGTCGACATGGGCCAGACTTCCAGTCACCGGCAGATGCACC
ACAGTAGCAATAACAACAACAAGGAGGAACCACCACAACCGGCTTCACAG
TTTGGAAATCGTCGAACCTCTACCCGCAAATCGACTTCGTCTTCGAAACA
TTACCCCACATTGGTGCAACCATTGCGTAAGGATGAGCTCTCTCTCCTGC
GAGATTCACTTCTGCGCAATGGAAGCATTATGCGCAAGAACCCGGAACGT
CGTCCGGTAACGATCAGTGAGCTGAAACCAGTTAATACCGGGCAGGGGAC
TTCGGGTAGTGTCCTGCCTATTACAGCAGAGGATGCTGCTGGTGGGAGCA
GTAGTAGCATCACCCAACTAATGGCCTTCCAACTGCCCGTGGATCGAAGT
GCCAAGACTGACGACCTGGCTGCCGAATCCTCGGCTTCAGCAGCAGCAGC
TGTGGCGCCCAAGGAGGGGCGCAATGAGTTTTATATTGTGGGAGATGGCT
ATCATCGGACGGATCACTGCTACTATCGCAGTCCCAATGGCGATTTTCAC
AAACTGCCATCCGACTCCTTTCACAAGATGTCGGAGGGCTGTTTCGTCCG
AATGGCCGATGGGGTCTTCCGTCGCCTGGAGGTACCCACCAAGGCTCAAA
TATCCCGAAGATCCAGCAGGGCAGAGGAAATAGGCGATGCCACAAGCCAG
GGAAATGGAAGTGCCGCCACCAATGTTAAGAGCCAACTGATGAGATTTCT
AAAGCGCTCCAAGAGCCACACGCCCGCCACTATTGCCAAGTTGCAGCGGG
AAAAGGAGGAGGCCCGAGCGGAAACGCAGCAACGGCTATCGAACGCCC
BS16944.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8201-PI | 2982 | par-1-RI | 1..807 | 17..823 | 4035 | 100 | Plus |
CG8201-PO | 2982 | par-1-RO | 1..807 | 17..823 | 4035 | 100 | Plus |
CG8201-PQ | 1074 | par-1-RQ | 1..807 | 17..823 | 4035 | 100 | Plus |
CG8201-PJ | 2982 | par-1-RJ | 1..807 | 17..823 | 4035 | 100 | Plus |
CG8201-PH | 2982 | par-1-RH | 1..807 | 17..823 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:54:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
par-1-RQ | 3321 | CG8201-RQ | 610..1442 | 16..848 | 4120 | 99.8 | Plus |
par-1-RH | 4868 | CG8201-RH | 474..1306 | 16..848 | 4120 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:54:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19464641..19465473 | 16..848 | 4105 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:54:38 has no hits.
BS16944.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:06 Download gff for
BS16944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8201-PH | 1..832 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:34:37 Download gff for
BS16944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-1-RH | 467..1306 | 9..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:57 Download gff for
BS16944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-1-RH | 467..1306 | 9..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:57 Download gff for
BS16944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19464634..19465473 | 9..848 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:34:37 Download gff for
BS16944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15352139..15352978 | 9..848 | 99 | | Plus |
BS16944.complete Sequence
1106 bp assembled on 2007-05-07
GenBank Submission: FJ638213
> BS16944.complete
GAAGTTATCAGTCGACATGGGCCAGACTTCCAGTCACCGGCAGATGCACC
ACAGTAGCAATAACAACAACAAGGAGGAACCACCACAACCGGCTTCACAG
TTTGGAAATCGTCGAACCTCTACCCGCAAATCGACTTCGTCTTCGAAACA
TTACCCCACATTGGTGCAACCATTGCGTAAGGATGAGCTCTCTCTCCTGC
GAGATTCACTTCTGCGCAATGGAAGCATTATGCGCAAGAACCCGGAACGT
CGTCCGGTAACGATCAGTGAGCTGAAACCAGTTAATACCGGGCAGGGGAC
TTCGGGTAGTGTCCTGCCTATTACAGCAGAGGATGCTGCTGGTGGGAGCA
GTAGTAGCATCACCCAACTAATGGCCTTCCAACTGCCCGTGGATCGAAGT
GCCAAGACTGACGACCTGGCTGCCGAATCCTCGGCTTCAGCAGCAGCAGC
TGTGGCGCCCAAGGAGGGGCGCAATGAGTTTTATATTGTGGGAGATGGCT
ATCATCGGACGGATCACTGCTACTATCGCAGTCCCAATGGCGATTTTCAC
AAACTGCCATCCGACTCCTTTCACAAGATGTCGGAGGGCTGTTTCGTCCG
AATGGCCGATGGGGTCTTCCGTCGCCTGGAGGTACCCACCAAGGCTCAAA
TATCCCGAAGATCCAGCAGGGCAGAGGAAATAGGCGATGCCACAAGCCAG
GGAAATGGAAGTGCCGCCACCAATGTTAAGAGCCAACTGATGAGATTTCT
AAAGCGCTCCAAGAGCCACACGCCCGCCACTATTGCCAAGTTGCAGCGGG
AAAAGGAGGAGGCCCGAGCGGAACGCAAGCAACGGCTATCGAACGCCCTG
CGGCAGAAGAATCTAGCGGCCACAAATGCAGCCTCAGCTGCGGCGGCGAA
CTCATCCTACGCAAGCGGTGGTGGTGGTGGCACCGTAAGCAGTCGGAACA
ATAAGATTGTGGTGACAATGATCGAAAACGGCGGCTTGCCCATTGTGGCC
ACCAGTAAGGCGGAAAGGCCCAAGGCCAAGGAGTCGGCATCATCCAGTGA
CAAGGCTCGCAACTCGAGGATTTTTGTTACCCCACATTGAAAGCTTTCTA
GACCAT
BS16944.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:23:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
par-1-RQ | 1074 | CG8201-PQ | 1..1074 | 17..1090 | 5370 | 100 | Plus |
par-1-RH | 2982 | CG8201-PH | 1..1053 | 17..1069 | 5265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
par-1-RQ | 3321 | CG8201-RQ | 610..1685 | 16..1091 | 5380 | 100 | Plus |
par-1-RH | 4868 | CG8201-RH | 474..1527 | 16..1069 | 5270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19464641..19465694 | 16..1069 | 5270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:23:20 has no hits.
BS16944.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:29 Download gff for
BS16944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-1-RQ | 1..1074 | 17..1090 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:29 Download gff for
BS16944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-1-RQ | 569..1657 | 9..1100 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:39 Download gff for
BS16944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-1-RQ | 611..1683 | 17..1089 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:29 Download gff for
BS16944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-1-RQ | 569..1657 | 9..1100 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:20 Download gff for
BS16944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-1-RQ | 611..1683 | 17..1089 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:20 Download gff for
BS16944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19464642..19465694 | 17..1069 | 100 | -> | Plus |
2R | 19466156..19466175 | 1070..1089 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:39 Download gff for
BS16944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15352147..15353199 | 17..1069 | 100 | -> | Plus |
arm_2R | 15353661..15353680 | 1070..1089 | 100 | | Plus |
BS16944.pep Sequence
Translation from 16 to 1089
> BS16944.pep
MGQTSSHRQMHHSSNNNNKEEPPQPASQFGNRRTSTRKSTSSSKHYPTLV
QPLRKDELSLLRDSLLRNGSIMRKNPERRPVTISELKPVNTGQGTSGSVL
PITAEDAAGGSSSSITQLMAFQLPVDRSAKTDDLAAESSASAAAAVAPKE
GRNEFYIVGDGYHRTDHCYYRSPNGDFHKLPSDSFHKMSEGCFVRMADGV
FRRLEVPTKAQISRRSSRAEEIGDATSQGNGSAATNVKSQLMRFLKRSKS
HTPATIAKLQREKEEARAERKQRLSNALRQKNLAATNAASAAAANSSYAS
GGGGGTVSSRNNKIVVTMIENGGLPIVATSKAERPKAKESASSSDKARNS
RIFVTPH*
BS16944.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
par-1-PQ | 357 | CG8201-PQ | 1..357 | 1..357 | 1800 | 100 | Plus |
par-1-PH | 993 | CG8201-PH | 1..351 | 1..351 | 1766 | 100 | Plus |