Clone BS16944 Report

Search the DGRC for BS16944

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:169
Well:44
Vector:pDNR-Dual
Associated Gene/Transcriptpar-1-RQ
Protein status:BS16944.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16944.3prime Sequence

892 bp (805 high quality bases) assembled on 2007-05-15

> BS16944.3prime
ATGGTCTAGAAAGCTTTCAATGTGGGGTAACAAAAATCCTCGAGTTGCGA
GCCTTGTCACTGGATGATGCCGACTCCTTGGCCTTGGGCCTTTCCGCCTT
ACTGGTGGCCACAATGGGCAAGCCGCCGTTTTCGATCATTGTCACCACAA
TCTTATTGTTCCGACTGCTTACGGTGCCACCACCACCACCGCTTGCGTAG
GATGAGTTCGCCGCCGCAGCTGAGGCTGCATTTGTGGCCGCTAGATTCTT
CTGCCGCAGGGCGTTCGATAGCCGTTGCTTGCGTTCCGCTCGGGCCTCCT
CCTTTTCCCGCTGCAACTTGGCAATAGTGGCGGGCGTGTGGCTCTTGGAG
CGCTTTAGAAATCTCATCAGTTGGCTCTTAACATTGGTGGCGGCACTTCC
ATTTCCCTGGCTTGTGGCATCGCCTATTTCCTCTGCCCTGCTGGATCTTC
GGGATATTTGAGCCTTGGTGGGTACCTCCAGGCGACGGAAGACCCCATCG
GCCATTCGGACGAAACAGCCCTCCGACATCTTGTGAAAGGAGTCGGATGG
CAGTTTGTGAAAATCGCCATTGGGACTGCGATAGTAGCAGTGATCCGTCC
GATGATAGCCATCTCCCACAATATAAAACTCATTGCGCCCCTCCTTGGGC
GCCACAGCTGCTGCTGCTGAAGCCGAGGATTCGGCAGCCAGGTCGTCAGT
CTTGGCACTTCGATCCACGGGCAGTTGGAAGGCCATTAGTTGGGTGATGC
TACTACTGCTCCCACCAGCAGCATCCTCTGCTGTAATAGGCAGGACACTA
CCCGAAGTCCCCTGCCCGGTATTAACTGGTTTCAGCTCACTGATCGTTAC
CGGACGACGTTCCGGGTTCTTGCGCATAATGCTTCCATTGCG

BS16944.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8201-PQ 1074 par-1-RQ 199..1074 892..17 4380 100 Minus
CG8201-PI 2982 par-1-RI 199..1053 892..38 4275 100 Minus
CG8201-PO 2982 par-1-RO 199..1053 892..38 4275 100 Minus
CG8201-PJ 2982 par-1-RJ 199..1053 892..38 4275 100 Minus
CG8201-PH 2982 par-1-RH 199..1053 892..38 4275 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
par-1-RQ 3321 CG8201-RQ 809..1685 892..16 4385 100 Minus
par-1-RH 4868 CG8201-RH 673..1527 892..38 4275 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19464840..19465694 892..38 4275 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:34:00 has no hits.

BS16944.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:10 Download gff for BS16944.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8201-PQ 199..1074 17..892 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:43:57 Download gff for BS16944.3prime
Subject Subject Range Query Range Percent Splice Strand
par-1-RQ 809..1691 7..892 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:33:55 Download gff for BS16944.3prime
Subject Subject Range Query Range Percent Splice Strand
par-1-RQ 809..1691 7..892 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:33:55 Download gff for BS16944.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19464840..19465694 38..892 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:43:57 Download gff for BS16944.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15352345..15353199 38..892 100 -> Minus

BS16944.5prime Sequence

848 bp (821 high quality bases) assembled on 2007-05-15

> BS16944.5prime
GAAGTTATCAGTCGACATGGGCCAGACTTCCAGTCACCGGCAGATGCACC
ACAGTAGCAATAACAACAACAAGGAGGAACCACCACAACCGGCTTCACAG
TTTGGAAATCGTCGAACCTCTACCCGCAAATCGACTTCGTCTTCGAAACA
TTACCCCACATTGGTGCAACCATTGCGTAAGGATGAGCTCTCTCTCCTGC
GAGATTCACTTCTGCGCAATGGAAGCATTATGCGCAAGAACCCGGAACGT
CGTCCGGTAACGATCAGTGAGCTGAAACCAGTTAATACCGGGCAGGGGAC
TTCGGGTAGTGTCCTGCCTATTACAGCAGAGGATGCTGCTGGTGGGAGCA
GTAGTAGCATCACCCAACTAATGGCCTTCCAACTGCCCGTGGATCGAAGT
GCCAAGACTGACGACCTGGCTGCCGAATCCTCGGCTTCAGCAGCAGCAGC
TGTGGCGCCCAAGGAGGGGCGCAATGAGTTTTATATTGTGGGAGATGGCT
ATCATCGGACGGATCACTGCTACTATCGCAGTCCCAATGGCGATTTTCAC
AAACTGCCATCCGACTCCTTTCACAAGATGTCGGAGGGCTGTTTCGTCCG
AATGGCCGATGGGGTCTTCCGTCGCCTGGAGGTACCCACCAAGGCTCAAA
TATCCCGAAGATCCAGCAGGGCAGAGGAAATAGGCGATGCCACAAGCCAG
GGAAATGGAAGTGCCGCCACCAATGTTAAGAGCCAACTGATGAGATTTCT
AAAGCGCTCCAAGAGCCACACGCCCGCCACTATTGCCAAGTTGCAGCGGG
AAAAGGAGGAGGCCCGAGCGGAAACGCAGCAACGGCTATCGAACGCCC

BS16944.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8201-PI 2982 par-1-RI 1..807 17..823 4035 100 Plus
CG8201-PO 2982 par-1-RO 1..807 17..823 4035 100 Plus
CG8201-PQ 1074 par-1-RQ 1..807 17..823 4035 100 Plus
CG8201-PJ 2982 par-1-RJ 1..807 17..823 4035 100 Plus
CG8201-PH 2982 par-1-RH 1..807 17..823 4035 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
par-1-RQ 3321 CG8201-RQ 610..1442 16..848 4120 99.8 Plus
par-1-RH 4868 CG8201-RH 474..1306 16..848 4120 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19464641..19465473 16..848 4105 99.5 Plus
Blast to na_te.dros performed on 2015-02-10 15:54:38 has no hits.

BS16944.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:06 Download gff for BS16944.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8201-PH 1..832 17..848 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:34:37 Download gff for BS16944.5prime
Subject Subject Range Query Range Percent Splice Strand
par-1-RH 467..1306 9..848 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:57 Download gff for BS16944.5prime
Subject Subject Range Query Range Percent Splice Strand
par-1-RH 467..1306 9..848 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:57 Download gff for BS16944.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19464634..19465473 9..848 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:34:37 Download gff for BS16944.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15352139..15352978 9..848 99   Plus

BS16944.complete Sequence

1106 bp assembled on 2007-05-07

GenBank Submission: FJ638213

> BS16944.complete
GAAGTTATCAGTCGACATGGGCCAGACTTCCAGTCACCGGCAGATGCACC
ACAGTAGCAATAACAACAACAAGGAGGAACCACCACAACCGGCTTCACAG
TTTGGAAATCGTCGAACCTCTACCCGCAAATCGACTTCGTCTTCGAAACA
TTACCCCACATTGGTGCAACCATTGCGTAAGGATGAGCTCTCTCTCCTGC
GAGATTCACTTCTGCGCAATGGAAGCATTATGCGCAAGAACCCGGAACGT
CGTCCGGTAACGATCAGTGAGCTGAAACCAGTTAATACCGGGCAGGGGAC
TTCGGGTAGTGTCCTGCCTATTACAGCAGAGGATGCTGCTGGTGGGAGCA
GTAGTAGCATCACCCAACTAATGGCCTTCCAACTGCCCGTGGATCGAAGT
GCCAAGACTGACGACCTGGCTGCCGAATCCTCGGCTTCAGCAGCAGCAGC
TGTGGCGCCCAAGGAGGGGCGCAATGAGTTTTATATTGTGGGAGATGGCT
ATCATCGGACGGATCACTGCTACTATCGCAGTCCCAATGGCGATTTTCAC
AAACTGCCATCCGACTCCTTTCACAAGATGTCGGAGGGCTGTTTCGTCCG
AATGGCCGATGGGGTCTTCCGTCGCCTGGAGGTACCCACCAAGGCTCAAA
TATCCCGAAGATCCAGCAGGGCAGAGGAAATAGGCGATGCCACAAGCCAG
GGAAATGGAAGTGCCGCCACCAATGTTAAGAGCCAACTGATGAGATTTCT
AAAGCGCTCCAAGAGCCACACGCCCGCCACTATTGCCAAGTTGCAGCGGG
AAAAGGAGGAGGCCCGAGCGGAACGCAAGCAACGGCTATCGAACGCCCTG
CGGCAGAAGAATCTAGCGGCCACAAATGCAGCCTCAGCTGCGGCGGCGAA
CTCATCCTACGCAAGCGGTGGTGGTGGTGGCACCGTAAGCAGTCGGAACA
ATAAGATTGTGGTGACAATGATCGAAAACGGCGGCTTGCCCATTGTGGCC
ACCAGTAAGGCGGAAAGGCCCAAGGCCAAGGAGTCGGCATCATCCAGTGA
CAAGGCTCGCAACTCGAGGATTTTTGTTACCCCACATTGAAAGCTTTCTA
GACCAT

BS16944.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
par-1-RQ 1074 CG8201-PQ 1..1074 17..1090 5370 100 Plus
par-1-RH 2982 CG8201-PH 1..1053 17..1069 5265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
par-1-RQ 3321 CG8201-RQ 610..1685 16..1091 5380 100 Plus
par-1-RH 4868 CG8201-RH 474..1527 16..1069 5270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19464641..19465694 16..1069 5270 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:23:20 has no hits.

BS16944.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:29 Download gff for BS16944.complete
Subject Subject Range Query Range Percent Splice Strand
par-1-RQ 1..1074 17..1090 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:29 Download gff for BS16944.complete
Subject Subject Range Query Range Percent Splice Strand
par-1-RQ 569..1657 9..1100 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:39 Download gff for BS16944.complete
Subject Subject Range Query Range Percent Splice Strand
par-1-RQ 611..1683 17..1089 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:29 Download gff for BS16944.complete
Subject Subject Range Query Range Percent Splice Strand
par-1-RQ 569..1657 9..1100 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:20 Download gff for BS16944.complete
Subject Subject Range Query Range Percent Splice Strand
par-1-RQ 611..1683 17..1089 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:20 Download gff for BS16944.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19464642..19465694 17..1069 100 -> Plus
2R 19466156..19466175 1070..1089 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:39 Download gff for BS16944.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15352147..15353199 17..1069 100 -> Plus
arm_2R 15353661..15353680 1070..1089 100   Plus

BS16944.pep Sequence

Translation from 16 to 1089

> BS16944.pep
MGQTSSHRQMHHSSNNNNKEEPPQPASQFGNRRTSTRKSTSSSKHYPTLV
QPLRKDELSLLRDSLLRNGSIMRKNPERRPVTISELKPVNTGQGTSGSVL
PITAEDAAGGSSSSITQLMAFQLPVDRSAKTDDLAAESSASAAAAVAPKE
GRNEFYIVGDGYHRTDHCYYRSPNGDFHKLPSDSFHKMSEGCFVRMADGV
FRRLEVPTKAQISRRSSRAEEIGDATSQGNGSAATNVKSQLMRFLKRSKS
HTPATIAKLQREKEEARAERKQRLSNALRQKNLAATNAASAAAANSSYAS
GGGGGTVSSRNNKIVVTMIENGGLPIVATSKAERPKAKESASSSDKARNS
RIFVTPH*

BS16944.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:25
Subject Length Description Subject Range Query Range Score Percent Strand
par-1-PQ 357 CG8201-PQ 1..357 1..357 1800 100 Plus
par-1-PH 993 CG8201-PH 1..351 1..351 1766 100 Plus