Clone BS16945 Report

Search the DGRC for BS16945

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:169
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptCG32333-RB
Protein status:BS16945.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16945.3prime Sequence

741 bp (741 high quality bases) assembled on 2007-05-15

> BS16945.3prime
ATGGTCTAGAAAGCTTTCACTTGATATACGGCTGATGAAGGGCCACGAGG
CTGGCGTGGATGCCCACACTGATGGCCGCCAGATGGAAGTAGTCGAACAG
CACAGGCAGATGGTAGTGAAGGCCACGTCCCGGATGAAAGTTCAGCTGCA
GGTTCCTGGTGGAGGCCAGTGTCAGGGCAGAGCTGGCGGGTCCGGAGAAG
CTGCCCATCCCACTGCCGCCTCCATTGCCGTTCAGGCTGCTCGACCCGTT
CTGCTCCCCGAACCAGAGCTCCAACTGCAGCGAAAACTCGGCTCGTTCGA
TGGACTCCTTCAGGTGACGACTGTCAACTAGCAGATGGCTCCTGAAGTGG
ATGATGTCGCGCAGCGGAACCTCCTCGTTGCGGTAGAGTATCTGGAAGAT
GCGCGAGGCGCCGCTGCCGTTGATAACGGAGGCGGATGAGCAGCTGCCCC
CCGGCGGTGATTCGTGGAGGCGTGGCACTTCCCCCGGCGACAGCTCCCCC
CTCTCGCTATCGCTGCTGCCGTGGTCGGTGGCGTTGGCCCCGTTGGCATG
TCCGTTCTGTTTTCCGGGTCCACTGGCTTCCGGAATGCTCGTCTCCACCT
GCACAAGTAGGCGGGGTGAAACACGCAGGCCACAGCGCACCTGGTAGAGT
CCGCGCTGAAACAAATCCACATTGAAGAACTTGTGCAGCTCCACGACGAA
TTCAATGGTGGCCTGTAGGTCACCCATGTCGACTGATAACT

BS16945.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG32333-PB 711 CG32333-RB 1..711 727..17 3555 100 Minus
CG32333-PA 4470 CG32333-RA 1..707 727..21 3535 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG32333-RB 1109 CG32333-RB 309..1020 728..17 3560 100 Minus
CG32333-RC 6339 CG32333-RC 425..1133 728..20 3545 100 Minus
CG32333-RA 4876 CG32333-RA 309..1016 728..21 3540 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1284787..1285114 651..324 1625 99.7 Minus
3L 28110227 3L 1287930..1288242 329..17 1565 100 Minus
3L 28110227 3L 1283735..1283812 728..651 390 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:27:08 has no hits.

BS16945.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:18 Download gff for BS16945.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32333-PB 1..711 17..727 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:14:09 Download gff for BS16945.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32333-RB 309..1020 17..728 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:38 Download gff for BS16945.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32333-RB 309..1020 17..728 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:38 Download gff for BS16945.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1284788..1285110 328..650 100 -> Minus
3L 1287932..1288242 17..327 100   Minus
3L 1283735..1283812 651..728 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:14:09 Download gff for BS16945.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1283735..1283812 651..728 100 -> Minus
arm_3L 1284788..1285110 328..650 100 -> Minus
arm_3L 1287932..1288242 17..327 100   Minus

BS16945.5prime Sequence

741 bp (741 high quality bases) assembled on 2007-05-15

> BS16945.5prime
GAAGTTATCAGTCGACATGGGTGACCTACAGGCCACCATTGAATTCGTCG
TGGAGCTGCACAAGTTCTTCAATGTGGATTTGTTTCAGCGCGGACTCTAC
CAGGTGCGCTGTGGCCTGCGTGTTTCACCCCGCCTACTTGTGCAGGTGGA
GACGAGCATTCCGGAAGCCAGTGGACCCGGAAAACAGAACGGACATGCCA
ACGGGGCCAACGCCACCGACCACGGCAGCAGCGATAGCGAGAGGGGGGAG
CTGTCGCCGGGGGAAGTGCCACGCCTCCACGAATCACCGCCGGGGGGCAG
CTGCTCATCCGCCTCCGTTATCAACGGCAGCGGCGCCTCGCGCATCTTCC
AGATACTCTACCGCAACGAGGAGGTTCCGCTGCGCGACATCATCCACTTC
AGGAGCCATCTGCTAGTTGACAGTCGTCACCTGAAGGAGTCCATCGAACG
AGCCGAGTTTTCGCTGCAGTTGGAGCTCTGGTTCGGGGAGCAGAACGGGT
CGAGCAGCCTGAACGGCAATGGAGGCGGCAGTGGGATGGGCAGCTTCTCC
GGACCCGCCAGCTCTGCCCTGACACTGGCCTCCACCAGGAACCTGCAGCT
GAACTTTCATCCGGGACGTGGCCTTCACTACCATCTGCCTGTGCTGTTCG
ACTACTTCCATCTGGCGGCCATCAGTGTGGGCATCCACGCCAGCCTCGTG
GCCCTTCATCAGCCGTATATCAAGTGAAAGCTTTCTAGACC

BS16945.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG32333-PB 711 CG32333-RB 1..711 17..727 3555 100 Plus
CG32333-PA 4470 CG32333-RA 1..707 17..723 3535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG32333-RB 1109 CG32333-RB 309..1020 16..727 3560 100 Plus
CG32333-RC 6339 CG32333-RC 425..1133 16..724 3545 100 Plus
CG32333-RA 4876 CG32333-RA 309..1016 16..723 3540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1284787..1285114 93..420 1625 99.7 Plus
3L 28110227 3L 1287930..1288242 415..727 1565 100 Plus
3L 28110227 3L 1283735..1283812 16..93 390 100 Plus
Blast to na_te.dros performed on 2015-02-13 11:53:59 has no hits.

BS16945.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:15 Download gff for BS16945.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32333-PB 1..711 17..727 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:46:24 Download gff for BS16945.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32333-RB 309..1020 16..727 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:17:38 Download gff for BS16945.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32333-RB 309..1020 16..727 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:17:38 Download gff for BS16945.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1287932..1288242 417..727 100   Plus
3L 1283735..1283812 16..93 100 -> Plus
3L 1284788..1285110 94..416 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:46:24 Download gff for BS16945.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1283735..1283812 16..93 100 -> Plus
arm_3L 1284788..1285110 94..416 100 -> Plus
arm_3L 1287932..1288242 417..727 100   Plus

BS16945.complete Sequence

743 bp assembled on 2007-05-07

GenBank Submission: FJ638214

> BS16945.complete
GAAGTTATCAGTCGACATGGGTGACCTACAGGCCACCATTGAATTCGTCG
TGGAGCTGCACAAGTTCTTCAATGTGGATTTGTTTCAGCGCGGACTCTAC
CAGGTGCGCTGTGGCCTGCGTGTTTCACCCCGCCTACTTGTGCAGGTGGA
GACGAGCATTCCGGAAGCCAGTGGACCCGGAAAACAGAACGGACATGCCA
ACGGGGCCAACGCCACCGACCACGGCAGCAGCGATAGCGAGAGGGGGGAG
CTGTCGCCGGGGGAAGTGCCACGCCTCCACGAATCACCGCCGGGGGGCAG
CTGCTCATCCGCCTCCGTTATCAACGGCAGCGGCGCCTCGCGCATCTTCC
AGATACTCTACCGCAACGAGGAGGTTCCGCTGCGCGACATCATCCACTTC
AGGAGCCATCTGCTAGTTGACAGTCGTCACCTGAAGGAGTCCATCGAACG
AGCCGAGTTTTCGCTGCAGTTGGAGCTCTGGTTCGGGGAGCAGAACGGGT
CGAGCAGCCTGAACGGCAATGGAGGCGGCAGTGGGATGGGCAGCTTCTCC
GGACCCGCCAGCTCTGCCCTGACACTGGCCTCCACCAGGAACCTGCAGCT
GAACTTTCATCCGGGACGTGGCCTTCACTACCATCTGCCTGTGCTGTTCG
ACTACTTCCATCTGGCGGCCATCAGTGTGGGCATCCACGCCAGCCTCGTG
GCCCTTCATCAGCCGTATATCAAGTGAAAGCTTTCTAGACCAT

BS16945.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG32333-RB 711 CG32333-PB 1..711 17..727 3555 100 Plus
CG32333-RC 4500 CG32333-PC 1..708 17..724 3540 100 Plus
CG32333-RA 4470 CG32333-PA 1..707 17..723 3535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG32333-RB 1109 CG32333-RB 309..1020 16..727 3560 100 Plus
CG32333-RC 6339 CG32333-RC 425..1133 16..724 3545 100 Plus
CG32333-RA 4876 CG32333-RA 309..1016 16..723 3540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1284787..1285114 93..420 1625 99.7 Plus
3L 28110227 3L 1287930..1288242 415..727 1565 100 Plus
3L 28110227 3L 1283735..1283812 16..93 390 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:08:03 has no hits.

BS16945.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:30 Download gff for BS16945.complete
Subject Subject Range Query Range Percent Splice Strand
CG32333-RB 1..711 17..727 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:31 Download gff for BS16945.complete
Subject Subject Range Query Range Percent Splice Strand
CG32333-RB 292..1003 16..727 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:47 Download gff for BS16945.complete
Subject Subject Range Query Range Percent Splice Strand
CG32333-RB 310..1019 17..726 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:30 Download gff for BS16945.complete
Subject Subject Range Query Range Percent Splice Strand
CG32333-RB 292..1003 16..727 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:37 Download gff for BS16945.complete
Subject Subject Range Query Range Percent Splice Strand
CG32333-RB 310..1019 17..726 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:37 Download gff for BS16945.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1283736..1283812 17..93 100 -> Plus
3L 1284788..1285110 94..416 100 -> Plus
3L 1287932..1288241 417..726 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:47 Download gff for BS16945.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1283736..1283812 17..93 100 -> Plus
arm_3L 1284788..1285110 94..416 100 -> Plus
arm_3L 1287932..1288241 417..726 100   Plus

BS16945.pep Sequence

Translation from 16 to 726

> BS16945.pep
MGDLQATIEFVVELHKFFNVDLFQRGLYQVRCGLRVSPRLLVQVETSIPE
ASGPGKQNGHANGANATDHGSSDSERGELSPGEVPRLHESPPGGSCSSAS
VINGSGASRIFQILYRNEEVPLRDIIHFRSHLLVDSRHLKESIERAEFSL
QLELWFGEQNGSSSLNGNGGGSGMGSFSGPASSALTLASTRNLQLNFHPG
RGLHYHLPVLFDYFHLAAISVGIHASLVALHQPYIK*

BS16945.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG32333-PB 236 CG32333-PB 1..236 1..236 1226 100 Plus
CG32333-PC 1499 CG32333-PC 1..236 1..236 1226 100 Plus
CG32333-PA 1489 CG32333-PA 1..235 1..235 1221 100 Plus