Clone Sequence Records
BS16945.3prime Sequence
741 bp (741 high quality bases) assembled on 2007-05-15
> BS16945.3prime
ATGGTCTAGAAAGCTTTCACTTGATATACGGCTGATGAAGGGCCACGAGG
CTGGCGTGGATGCCCACACTGATGGCCGCCAGATGGAAGTAGTCGAACAG
CACAGGCAGATGGTAGTGAAGGCCACGTCCCGGATGAAAGTTCAGCTGCA
GGTTCCTGGTGGAGGCCAGTGTCAGGGCAGAGCTGGCGGGTCCGGAGAAG
CTGCCCATCCCACTGCCGCCTCCATTGCCGTTCAGGCTGCTCGACCCGTT
CTGCTCCCCGAACCAGAGCTCCAACTGCAGCGAAAACTCGGCTCGTTCGA
TGGACTCCTTCAGGTGACGACTGTCAACTAGCAGATGGCTCCTGAAGTGG
ATGATGTCGCGCAGCGGAACCTCCTCGTTGCGGTAGAGTATCTGGAAGAT
GCGCGAGGCGCCGCTGCCGTTGATAACGGAGGCGGATGAGCAGCTGCCCC
CCGGCGGTGATTCGTGGAGGCGTGGCACTTCCCCCGGCGACAGCTCCCCC
CTCTCGCTATCGCTGCTGCCGTGGTCGGTGGCGTTGGCCCCGTTGGCATG
TCCGTTCTGTTTTCCGGGTCCACTGGCTTCCGGAATGCTCGTCTCCACCT
GCACAAGTAGGCGGGGTGAAACACGCAGGCCACAGCGCACCTGGTAGAGT
CCGCGCTGAAACAAATCCACATTGAAGAACTTGTGCAGCTCCACGACGAA
TTCAATGGTGGCCTGTAGGTCACCCATGTCGACTGATAACT
BS16945.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32333-PB | 711 | CG32333-RB | 1..711 | 727..17 | 3555 | 100 | Minus |
CG32333-PA | 4470 | CG32333-RA | 1..707 | 727..21 | 3535 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:27:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32333-RB | 1109 | CG32333-RB | 309..1020 | 728..17 | 3560 | 100 | Minus |
CG32333-RC | 6339 | CG32333-RC | 425..1133 | 728..20 | 3545 | 100 | Minus |
CG32333-RA | 4876 | CG32333-RA | 309..1016 | 728..21 | 3540 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:27:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1284787..1285114 | 651..324 | 1625 | 99.7 | Minus |
3L | 28110227 | 3L | 1287930..1288242 | 329..17 | 1565 | 100 | Minus |
3L | 28110227 | 3L | 1283735..1283812 | 728..651 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:27:08 has no hits.
BS16945.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:18 Download gff for
BS16945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32333-PB | 1..711 | 17..727 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:14:09 Download gff for
BS16945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32333-RB | 309..1020 | 17..728 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:38 Download gff for
BS16945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32333-RB | 309..1020 | 17..728 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:38 Download gff for
BS16945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1284788..1285110 | 328..650 | 100 | -> | Minus |
3L | 1287932..1288242 | 17..327 | 100 | | Minus |
3L | 1283735..1283812 | 651..728 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:14:09 Download gff for
BS16945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1283735..1283812 | 651..728 | 100 | -> | Minus |
arm_3L | 1284788..1285110 | 328..650 | 100 | -> | Minus |
arm_3L | 1287932..1288242 | 17..327 | 100 | | Minus |
BS16945.5prime Sequence
741 bp (741 high quality bases) assembled on 2007-05-15
> BS16945.5prime
GAAGTTATCAGTCGACATGGGTGACCTACAGGCCACCATTGAATTCGTCG
TGGAGCTGCACAAGTTCTTCAATGTGGATTTGTTTCAGCGCGGACTCTAC
CAGGTGCGCTGTGGCCTGCGTGTTTCACCCCGCCTACTTGTGCAGGTGGA
GACGAGCATTCCGGAAGCCAGTGGACCCGGAAAACAGAACGGACATGCCA
ACGGGGCCAACGCCACCGACCACGGCAGCAGCGATAGCGAGAGGGGGGAG
CTGTCGCCGGGGGAAGTGCCACGCCTCCACGAATCACCGCCGGGGGGCAG
CTGCTCATCCGCCTCCGTTATCAACGGCAGCGGCGCCTCGCGCATCTTCC
AGATACTCTACCGCAACGAGGAGGTTCCGCTGCGCGACATCATCCACTTC
AGGAGCCATCTGCTAGTTGACAGTCGTCACCTGAAGGAGTCCATCGAACG
AGCCGAGTTTTCGCTGCAGTTGGAGCTCTGGTTCGGGGAGCAGAACGGGT
CGAGCAGCCTGAACGGCAATGGAGGCGGCAGTGGGATGGGCAGCTTCTCC
GGACCCGCCAGCTCTGCCCTGACACTGGCCTCCACCAGGAACCTGCAGCT
GAACTTTCATCCGGGACGTGGCCTTCACTACCATCTGCCTGTGCTGTTCG
ACTACTTCCATCTGGCGGCCATCAGTGTGGGCATCCACGCCAGCCTCGTG
GCCCTTCATCAGCCGTATATCAAGTGAAAGCTTTCTAGACC
BS16945.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32333-PB | 711 | CG32333-RB | 1..711 | 17..727 | 3555 | 100 | Plus |
CG32333-PA | 4470 | CG32333-RA | 1..707 | 17..723 | 3535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:53:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32333-RB | 1109 | CG32333-RB | 309..1020 | 16..727 | 3560 | 100 | Plus |
CG32333-RC | 6339 | CG32333-RC | 425..1133 | 16..724 | 3545 | 100 | Plus |
CG32333-RA | 4876 | CG32333-RA | 309..1016 | 16..723 | 3540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:53:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1284787..1285114 | 93..420 | 1625 | 99.7 | Plus |
3L | 28110227 | 3L | 1287930..1288242 | 415..727 | 1565 | 100 | Plus |
3L | 28110227 | 3L | 1283735..1283812 | 16..93 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 11:53:59 has no hits.
BS16945.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:15 Download gff for
BS16945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32333-PB | 1..711 | 17..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:46:24 Download gff for
BS16945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32333-RB | 309..1020 | 16..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:17:38 Download gff for
BS16945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32333-RB | 309..1020 | 16..727 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:17:38 Download gff for
BS16945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1287932..1288242 | 417..727 | 100 | | Plus |
3L | 1283735..1283812 | 16..93 | 100 | -> | Plus |
3L | 1284788..1285110 | 94..416 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:46:24 Download gff for
BS16945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1283735..1283812 | 16..93 | 100 | -> | Plus |
arm_3L | 1284788..1285110 | 94..416 | 100 | -> | Plus |
arm_3L | 1287932..1288242 | 417..727 | 100 | | Plus |
BS16945.complete Sequence
743 bp assembled on 2007-05-07
GenBank Submission: FJ638214
> BS16945.complete
GAAGTTATCAGTCGACATGGGTGACCTACAGGCCACCATTGAATTCGTCG
TGGAGCTGCACAAGTTCTTCAATGTGGATTTGTTTCAGCGCGGACTCTAC
CAGGTGCGCTGTGGCCTGCGTGTTTCACCCCGCCTACTTGTGCAGGTGGA
GACGAGCATTCCGGAAGCCAGTGGACCCGGAAAACAGAACGGACATGCCA
ACGGGGCCAACGCCACCGACCACGGCAGCAGCGATAGCGAGAGGGGGGAG
CTGTCGCCGGGGGAAGTGCCACGCCTCCACGAATCACCGCCGGGGGGCAG
CTGCTCATCCGCCTCCGTTATCAACGGCAGCGGCGCCTCGCGCATCTTCC
AGATACTCTACCGCAACGAGGAGGTTCCGCTGCGCGACATCATCCACTTC
AGGAGCCATCTGCTAGTTGACAGTCGTCACCTGAAGGAGTCCATCGAACG
AGCCGAGTTTTCGCTGCAGTTGGAGCTCTGGTTCGGGGAGCAGAACGGGT
CGAGCAGCCTGAACGGCAATGGAGGCGGCAGTGGGATGGGCAGCTTCTCC
GGACCCGCCAGCTCTGCCCTGACACTGGCCTCCACCAGGAACCTGCAGCT
GAACTTTCATCCGGGACGTGGCCTTCACTACCATCTGCCTGTGCTGTTCG
ACTACTTCCATCTGGCGGCCATCAGTGTGGGCATCCACGCCAGCCTCGTG
GCCCTTCATCAGCCGTATATCAAGTGAAAGCTTTCTAGACCAT
BS16945.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:08:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32333-RB | 711 | CG32333-PB | 1..711 | 17..727 | 3555 | 100 | Plus |
CG32333-RC | 4500 | CG32333-PC | 1..708 | 17..724 | 3540 | 100 | Plus |
CG32333-RA | 4470 | CG32333-PA | 1..707 | 17..723 | 3535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:08:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32333-RB | 1109 | CG32333-RB | 309..1020 | 16..727 | 3560 | 100 | Plus |
CG32333-RC | 6339 | CG32333-RC | 425..1133 | 16..724 | 3545 | 100 | Plus |
CG32333-RA | 4876 | CG32333-RA | 309..1016 | 16..723 | 3540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:08:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1284787..1285114 | 93..420 | 1625 | 99.7 | Plus |
3L | 28110227 | 3L | 1287930..1288242 | 415..727 | 1565 | 100 | Plus |
3L | 28110227 | 3L | 1283735..1283812 | 16..93 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:08:03 has no hits.
BS16945.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:30 Download gff for
BS16945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32333-RB | 1..711 | 17..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:31 Download gff for
BS16945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32333-RB | 292..1003 | 16..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:47 Download gff for
BS16945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32333-RB | 310..1019 | 17..726 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:30 Download gff for
BS16945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32333-RB | 292..1003 | 16..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:37 Download gff for
BS16945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32333-RB | 310..1019 | 17..726 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:37 Download gff for
BS16945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1283736..1283812 | 17..93 | 100 | -> | Plus |
3L | 1284788..1285110 | 94..416 | 100 | -> | Plus |
3L | 1287932..1288241 | 417..726 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:47 Download gff for
BS16945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1283736..1283812 | 17..93 | 100 | -> | Plus |
arm_3L | 1284788..1285110 | 94..416 | 100 | -> | Plus |
arm_3L | 1287932..1288241 | 417..726 | 100 | | Plus |
BS16945.pep Sequence
Translation from 16 to 726
> BS16945.pep
MGDLQATIEFVVELHKFFNVDLFQRGLYQVRCGLRVSPRLLVQVETSIPE
ASGPGKQNGHANGANATDHGSSDSERGELSPGEVPRLHESPPGGSCSSAS
VINGSGASRIFQILYRNEEVPLRDIIHFRSHLLVDSRHLKESIERAEFSL
QLELWFGEQNGSSSLNGNGGGSGMGSFSGPASSALTLASTRNLQLNFHPG
RGLHYHLPVLFDYFHLAAISVGIHASLVALHQPYIK*
BS16945.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32333-PB | 236 | CG32333-PB | 1..236 | 1..236 | 1226 | 100 | Plus |
CG32333-PC | 1499 | CG32333-PC | 1..236 | 1..236 | 1226 | 100 | Plus |
CG32333-PA | 1489 | CG32333-PA | 1..235 | 1..235 | 1221 | 100 | Plus |