Clone BS16948 Report

Search the DGRC for BS16948

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:169
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptMhcl-RC
Protein status:BS16948.pep: full length peptide match
Sequenced Size:2795

Clone Sequence Records

BS16948.3prime Sequence

888 bp (744 high quality bases) assembled on 2007-05-15

> BS16948.3prime
ATGGTCTAGAAAGCTTTTAATGCTTGTGCTGCTTTCTGCTGTTCGAGTTG
ACTTCGTTATCAGCGTACCTCGGGCTGTTGTCGTCCTTTTCGAACACCAC
GGTGCGGGTGGAGCTGACAACGCTTCCGCCTCCGCCGCCGATGCTGCCGT
TCAAGGACTGCTGTGAGCTGCGTTTTACATGAACTGGCCGAAGTCGATCT
TCCAGATCACTGATAGAGCCCACCGAACTGAGGCTTTCATCACTTTCGCT
CAGCTCCTCCTCGCCCTCTTCCTCCATTGCCTGCTGTAGATCAGCTATTC
GCTGTAAAGCCAGTCGTAGATCGTTTTTAAGCGCCGCTCCCTCCGACTCC
ATTTGCTCCACCTTCTTCTCCAGGTCCTTGCGCCTTGTGAGCGACTCCTG
CTCGCGGCTGGAGACAGCGTGGAACTCTTCGCGCATGTCGCGCAGACTCT
TTTGCGATTTTTTGATTACATCCTGGGCCTGCATCTCACGCATCTTTGAC
TGCGTCACCTCGTTCTGCAGTTTTTCCAGAGCCTCTTTGTGACGGTTCAC
CTGCACTTCAAGGCGAGCCCGAGTGGCCTGCTCTAGTTCCAGTCGAGACT
CTAATTCCTTGGTGCGCAGCTCCAGTCGCTTGGACATCATGGCCATAGAT
GGATCCCCCAAGTTCTCAACGTTGTCCAGTCGGTGCTGCAGCTCGGCCAC
CTGCTCCTTGAGGTTATTGCGCTCTGCTTCCATTTCATTGAGTTTAAACT
CAGCCTCGGATACGTTGATTTGCTCTGTATTTAGTTGCTTTACCGTGGCG
CTGTACTTCTTCATCAGCTCGCCCAGCTCCTCCTCGTTCTCCTCGATCTG
GGCCTGCAGCTCAGCCCGATCTCTGTGTGCGGCATTGG

BS16948.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG31045-PF 5772 Mhcl-RF 4901..5772 888..17 4360 100 Minus
CG31045-PG 6483 Mhcl-RG 5612..6483 888..17 4360 100 Minus
CG31045-PC 2763 Mhcl-RC 1892..2763 888..17 4360 100 Minus
CG31045-PD 3405 Mhcl-RD 2570..3389 888..69 4100 100 Minus
CG31045-PA 6447 Mhcl-RA 5612..6431 888..69 4100 100 Minus
CG31045-PB 6585 Mhcl-RB 5612..6431 888..69 4100 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
Mhcl-RH 2015 CG31045-RH 1008..1880 888..16 4365 100 Minus
Mhcl-RC 2923 CG31045-RC 1916..2788 888..16 4365 100 Minus
Mhcl-RG 6782 CG31045-RG 5775..6647 888..16 4365 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:18:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16070098..16070482 243..627 1925 100 Plus
3R 32079331 3R 16070544..16070805 627..888 1310 100 Plus
3R 32079331 3R 16069810..16070038 16..244 1145 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:18:07 has no hits.

BS16948.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:40:54 Download gff for BS16948.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31045-PC 1892..2763 17..888 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:51:34 Download gff for BS16948.3prime
Subject Subject Range Query Range Percent Splice Strand
Mhcl-RG 5775..6650 13..888 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:49:30 Download gff for BS16948.3prime
Subject Subject Range Query Range Percent Splice Strand
Mhcl-RG 5775..6650 13..888 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:49:30 Download gff for BS16948.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16069807..16070036 13..242 99 <- Plus
3R 16070098..16070481 243..626 100 <- Plus
3R 16070544..16070805 627..888 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:51:34 Download gff for BS16948.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11895529..11895758 13..242 99 <- Plus
arm_3R 11895820..11896203 243..626 100 <- Plus
arm_3R 11896266..11896527 627..888 100   Plus

BS16948.5prime Sequence

848 bp (765 high quality bases) assembled on 2007-05-15

> BS16948.5prime
GAAGTTATCAGTCGACATGTGGTCGGATAAAAGTGCAGTTTGTTTGCCGT
TGAGTGGCAACGCGAGTGTCGCCGCATCATTTCGCAACAGTGCTCAAATC
CTGAACCTATTCTATGGCGAGGGGCATGAGGATTTTGTGGTGCCGCAGCC
AATCCTGGGACTGCTGACCATCGGCTGTGCTATCGCCTGCGTCCGTATAA
TCCTCTTCCGCTCAGGAGTTCTTAGTGAACTGGAAGCCAAGCGCGATGTC
CTGCTCTCAGATCGCATTATACAGCTGCAAGCATTTTGCCGCGGCTACTT
GGCACGCAAGAAGATGTCCCAACGAAGGGTCCAGGAACTGGCAGTGCGTT
GCATTCAACGCAATGTGAAGGCATTCCTTGCCGTTCGCGACTGGCCGTGG
TGGCGTCTCCTGGTGCGGGTCACTCCCCTGCTCAACGTTCATCGCACCGA
GGAGCAGCTGAAGACGGCTAACGAGGAGCTCCTAATGCTGCGAGCCAAGC
TGGAGAAGATCGAGTGTGATCGCAGTGAGGTCAAGGCAGAAAACCAAAAG
CTGGAAGCCAAGCTATCCGAGCTGACGGTGGACCTGGCCGAGGAGCGATC
CACGGCTCATATAGCTACCGAGCGGCTGGAGGCGGAAACCGCCGAACGCT
TGAAGCTGGAGAAGGAGCTGGGCGATCAAACCAACAAGGTGAAGAACCTT
CAGGAGACGACGGAGAAGCTGGAAATGGAGCTGATATGCGCCAAGTCCGA
TCTGAATGGCATCTCTGAAGACGAGGATGCAGAGAACGAAGATGGGGTCG
GCGGCGGCGTCTACAAGCTTAAGTACGAGCGGGTGGGCAGGGAGCTGG

BS16948.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG31045-PC 2763 Mhcl-RC 1..832 17..848 4085 99.6 Plus
CG31045-PF 5772 Mhcl-RF 3193..3841 200..848 3170 99.5 Plus
CG31045-PG 6483 Mhcl-RG 3904..4552 200..848 3170 99.5 Plus
CG31045-PA 6447 Mhcl-RA 3904..4552 200..848 3170 99.5 Plus
CG31045-PB 6585 Mhcl-RB 3904..4552 200..848 3170 99.5 Plus
CG31045-PD 3405 Mhcl-RD 1223..1510 561..848 1365 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
Mhcl-RC 2923 CG31045-RC 19..856 11..848 4130 99.5 Plus
Mhcl-RB 7418 CG31045-RB 4067..4715 200..848 3200 99.5 Plus
Mhcl-RA 6686 CG31045-RA 4067..4715 200..848 3200 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16073117..16073404 848..561 1395 99 Minus
3R 32079331 3R 16077114..16077344 562..332 1155 100 Minus
3R 32079331 3R 16082864..16083052 199..11 930 99.5 Minus
3R 32079331 3R 16077402..16077537 335..200 680 100 Minus
Blast to na_te.dros performed on 2015-02-04 20:56:30 has no hits.

BS16948.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:34:18 Download gff for BS16948.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31045-PC 1..832 17..848 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:36:53 Download gff for BS16948.5prime
Subject Subject Range Query Range Percent Splice Strand
Mhcl-RC 11..856 1..848 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:37:06 Download gff for BS16948.5prime
Subject Subject Range Query Range Percent Splice Strand
Mhcl-RC 11..856 1..848 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:37:06 Download gff for BS16948.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16073117..16073402 563..848 98 <- Minus
3R 16077114..16077341 335..562 100 <- Minus
3R 16077403..16077537 200..334 100 <- Minus
3R 16082864..16083060 1..199 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:36:53 Download gff for BS16948.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11898839..11899124 563..848 98 <- Minus
arm_3R 11902836..11903063 335..562 100 <- Minus
arm_3R 11903125..11903259 200..334 100 <- Minus
arm_3R 11908586..11908782 1..199 97   Minus

BS16948.complete Sequence

2795 bp assembled on 2010-05-12

GenBank Submission: KX803664

> BS16948.complete
GAAGTTATCAGTCGACATGTGGTCGGATAAAAGTGCAGTTTGTTTGCCGT
TGAGTGGCAACGCGAGTGTCGCCGCATCATTTCGCAACAGTGCTCAAATC
CTGAACCTATTCTATGGCGAGGGGCATGAGGATTTTGTGGTGCCGCAGCC
AATCCTGGGACTGCTGACCATCGGCTGTGCTATCGCCTGCGTCCGTATAA
TCCTCTTCCGCTCAGGAGTTCTTAGTGAACTGGAAGCCAAGCGCGATGTC
CTGCTCTCAGATCGCATTATACAGCTGCAAGCATTTTGCCGCGGCTACTT
GGCACGCAAGAAGATGTCCCAACGAAGGGTCCAGGAACTGGCAGTGCGTT
GCATTCAACGCAATGTGAAGGCATTCCTTGCCGTTCGCGACTGGCCGTGG
TGGCGTCTCCTGGTGCGGGTCACTCCCCTGCTCAACGTTCATCGCACCGA
GGAGCAGCTGAAGACGGCTAACGAGGAGCTCCTAATGCTGCGAGCCAAGC
TGGAGAAGATCGAGTGTGATCGCAGTGAGGTCAAGGCAGAAAACCAAAAG
CTGGAAGCCAAGCTATCCGAGCTGACGGTGGACCTGGCCGAGGAGCGATC
CACGGCTCATATAGCTACCGAGCGGCTGGAGGCGGAAACCGCCGAACGCT
TGAAGCTGGAGAAGGAGCTGGGCGATCAAACCAACAAGGTGAAGAACCTT
CAGGAGACGACGGAGAAGCTGGAAATGGAGCTGATATGCGCCAAGTCCGA
TCTGAATGGCATCTCTGAGGACGAGGATGCAGAGAACGAGGATGGGGTCG
GCGGCGGCGTCTACAAGCTTAAGTACGAGCGGGTGGCCAGGGAGCTGGAG
TTCACCAAAAGGCGGTTACACACGCAGCATGAGCACGATCTGGAACAGCT
GGTCGCGCTCAAGAAGCATTTGGAGATGAAGCTTTCCGATGCCTACGAAG
AAGTTGTGGAACAACGTCAGGTTGTGGGCCAATGGAAGCGCAAGGCACAG
AAGATGACCAACGAGATGAACGATCTGCGCATGCTGCTCGAGGAGCAAAA
TGCGCGCAACAATTTGCTCGAGAAGAAGCAGCGCAAGTTCGACGCCGAGT
GCCAGTCCCTGCAGGATGCAGTGCGTCAGGAGCGACAGGCCAAAGAGCGC
TACGGTCGCGAAAAGGACGTCCTGCAGGCCGAGAAGTTCACACTGGAGCA
AACGCTGGCGGACACCCGTCTGGATCTTGAATTCAAGGAGGAGAAACTTG
CATCGCTACAGCGCGAGCTGGAGGAGATGACCTTTGGTGGCGGCACCGAG
GAGGAGTTCGCCCAACTGCGGCGCTCCAAAAATGAAACAGAGCGTCGGGC
CAAGGAACAGGAGGAAGAACTGGACGAGATGGCCGGTCAGATACAGCTGC
TCGAACAAGCCAAGCTTCGCCTGGAGATGACCCTGGAAACAATGCGCAAA
GAAGCGCGCCGTGAGTCCCAGCAGCGCGACGAAGAGCTGGAAGAAGTACG
CGGTAACGGCTACAAGAAGATTAAAGCCCTTGAATGCCAGCTGGAAACTG
AGCACGAGGAGCGGACTCTGCTGCTGCGCGAGAAGCACGAGCTAGAGCGA
CGTCTCTCCTCCATGGAGGATCGCGATCGTGTTGATCGCGATGCCGAGGA
AGCGCTCAACCAAAAACTGCGACGCGATCTTCGCAAATACAAGGCCCTGC
TCAAGGACGCCCAGACACAGTTGGAGCGGCTTAAGGCTGACACGCCTGGC
AAGACGCTTATAAGACAACTGCGTAATCAACTGGAGGATGCCGAATCTGC
TCGTTCGCTGGCTATGAAAGCGCGACAAACTGCGGAAGCCGAACTTACTG
AAGTGCAGGCCATGTTCGATGAGTCGCATCGAGCTAGGAATGACGCGGAG
GAGCGAGCCAATGCCGCACACAGAGATCGGGCTGAGCTGCAGGCCCAGAT
CGAGGAGAACGAGGAGGAGCTGGGCGAGCTGATGAAGAAGTACAGCGCCA
CGGTAAAGCAACTAAATACAGAGCAAATCAACGTATCCGAGGCTGAGTTT
AAACTCAATGAAATGGAAGCAGAGCGCAATAACCTCAAGGAGCAGGTGGC
CGAGCTGCAGCACCGACTGGACAACGTTGAGAACTTGGGGGATCCATCTA
TGGCCATGATGTCCAAGCGACTGGAGCTGCGCACCAAGGAATTAGAGTCT
CGACTGGAACTAGAGCAGGCCACTCGGGCTCGCCTTGAAGTGCAGGTGAA
CCGTCACAAAGAGGCTCTGGAAAAACTGCAGAACGAGGTGACGCAGTCAA
AGATGCGTGAGATGCAGGCCCAGGATGTAATCAAAAAATCGCAAAAGAGT
CTGCGCGACATGCGCGAAGAGTTCCACGCTGTCTCCAGCCGCGAGCAGGA
GTCGCTCACAAGGCGCAAGGACCTGGAGAAGAAGGTGGAGCAAATGGAGT
CGGAGGGAGCGGCGCTTAAAAACGATCTACGACTGGCTTTACAGCGAATA
GCTGATCTACAGCAGGCAATGGAGGAAGAGGGCGAGGAGGAGCTGAGCGA
AAGTGATGAAAGCCTCAGTTCGGTGGGCTCTATCAGTGATCTGGAAGATC
GACTTCGGCCAGTTCATGTAAAACGCAGCTCACAGCAGTCCTTGAACGGC
AGCATCGGCGGCGGAGGCGGAAGCGTTGTCAGCTCCACCCGCACCGTGGT
GTTCGAAAAGGACGACAACAGCCCGAGGTACGCTGATAACGAAGTCAACT
CGAACAGCAGAAAGCAGCACAAGCATTAAAAGCTTTCTAGACCAT

BS16948.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
Mhcl-RC 2763 CG31045-PC 1..2763 17..2779 13815 100 Plus
Mhcl-RG 6483 CG31045-PG 3904..6483 200..2779 12900 100 Plus
Mhcl-RF 5772 CG31045-PF 3193..5772 200..2779 12900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
Mhcl-RC 2923 CG31045-RC 19..2788 11..2780 13835 100 Plus
Mhcl-RG 6782 CG31045-RG 4067..6647 200..2780 12905 100 Plus
Mhcl-RF 6509 CG31045-RF 3794..6374 200..2780 12905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16070544..16071503 2169..1210 4800 100 Minus
3R 32079331 3R 16070098..16070482 2553..2169 1925 100 Minus
3R 32079331 3R 16073034..16073404 931..561 1855 100 Minus
3R 32079331 3R 16072688..16072969 1211..930 1410 100 Minus
3R 32079331 3R 16077114..16077344 562..332 1155 100 Minus
3R 32079331 3R 16069810..16070038 2780..2552 1145 100 Minus
3R 32079331 3R 16082864..16083052 199..11 930 99.5 Minus
3R 32079331 3R 16077402..16077537 335..200 680 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:04:49 has no hits.

BS16948.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-12 12:11:58 Download gff for BS16948.complete
Subject Subject Range Query Range Percent Splice Strand
Mhcl-RC 25..2785 17..2777 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:13 Download gff for BS16948.complete
Subject Subject Range Query Range Percent Splice Strand
Mhcl-RC 25..2785 17..2777 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:13 Download gff for BS16948.complete
Subject Subject Range Query Range Percent Splice Strand
Mhcl-RC 25..2785 17..2777 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:13 Download gff for BS16948.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16069813..16070036 2554..2777 100 <- Minus
3R 16070098..16070481 2170..2553 100 <- Minus
3R 16070544..16071502 1211..2169 100 <- Minus
3R 16072689..16072967 932..1210 100 <- Minus
3R 16073034..16073402 563..931 100 <- Minus
3R 16077114..16077341 335..562 100 <- Minus
3R 16077403..16077537 200..334 100 <- Minus
3R 16082864..16083046 17..199 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:13 Download gff for BS16948.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11903125..11903259 200..334 100 <- Minus
arm_3R 11895535..11895758 2554..2777 100 <- Minus
arm_3R 11895820..11896203 2170..2553 100 <- Minus
arm_3R 11896266..11897224 1211..2169 100 <- Minus
arm_3R 11898411..11898689 932..1210 100 <- Minus
arm_3R 11898756..11899124 563..931 100 <- Minus
arm_3R 11902836..11903063 335..562 100 <- Minus
arm_3R 11908586..11908768 17..199 100   Minus

BS16948.pep Sequence

Translation from 16 to 2778

> BS16948.pep
MWSDKSAVCLPLSGNASVAASFRNSAQILNLFYGEGHEDFVVPQPILGLL
TIGCAIACVRIILFRSGVLSELEAKRDVLLSDRIIQLQAFCRGYLARKKM
SQRRVQELAVRCIQRNVKAFLAVRDWPWWRLLVRVTPLLNVHRTEEQLKT
ANEELLMLRAKLEKIECDRSEVKAENQKLEAKLSELTVDLAEERSTAHIA
TERLEAETAERLKLEKELGDQTNKVKNLQETTEKLEMELICAKSDLNGIS
EDEDAENEDGVGGGVYKLKYERVARELEFTKRRLHTQHEHDLEQLVALKK
HLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMNDLRMLLEEQNARNNL
LEKKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQTLADT
RLDLEFKEEKLASLQRELEEMTFGGGTEEEFAQLRRSKNETERRAKEQEE
ELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEVRGNGYK
KIKALECQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQK
LRRDLRKYKALLKDAQTQLERLKADTPGKTLIRQLRNQLEDAESARSLAM
KARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIEENEE
ELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHR
LDNVENLGDPSMAMMSKRLELRTKELESRLELEQATRARLEVQVNRHKEA
LEKLQNEVTQSKMREMQAQDVIKKSQKSLRDMREEFHAVSSREQESLTRR
KDLEKKVEQMESEGAALKNDLRLALQRIADLQQAMEEEGEEELSESDESL
SSVGSISDLEDRLRPVHVKRSSQQSLNGSIGGGGGSVVSSTRTVVFEKDD
NSPRYADNEVNSNSRKQHKH*

BS16948.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
Mhcl-PC 920 CG31045-PC 1..920 1..920 4572 100 Plus
Mhcl-PG 2160 CG31045-PG 1302..2160 62..920 4255 100 Plus
Mhcl-PF 1923 CG31045-PF 1065..1923 62..920 4255 100 Plus
Mhcl-PB 2194 CG31045-PB 1302..2144 62..904 4167 100 Plus
Mhcl-PA 2148 CG31045-PA 1302..2144 62..904 4167 100 Plus