Clone BS16949 Report

Search the DGRC for BS16949

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:169
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptNC2beta-RA
Protein status:BS16949.pep: full length peptide match
Sequenced Size:584

Clone Sequence Records

BS16949.3prime Sequence

582 bp (582 high quality bases) assembled on 2007-05-15

> BS16949.3prime
ATGGTCTAGAAAGCTTCTAGTAGTCGTCGTCGTCATCGTCATCGTCATCC
TCACTTGGCTTGCTGGCAACGGAGCCGTCTGCCAGCGGTGGTCGCTGCAC
CATTGCTGCCGCTTGCATGCTCATCCACTGCTGCTGCTCCTCGCGCGCCT
GCTCCTCGCGTGCCTTGGCGAACAGCTCCTGCTGCTGGCGCAGCAGCTCC
TCCTCCGGAATGCCCAGGTTCTCTAGGCGCGTGCTCTGGCGCCTTCGCTT
GGCTGCCACCTCCTTGCAGTCGTGCAGAACGGCCTCCGCCTCTTGTTTGT
AGTCGTGAAAACCCAAGCGTTCCAACGCCTCCAGGACGTGCTCTGCGTTT
ATCGTCTTCTTGTTGCGCATGTTGCACACCTCGTTGGCCTCCGAACTGAT
CAGATGAATGAACTCTGAGCAGCAGTTGAGTATCAGCTCGCGACTCTCGT
TGGCCACCCGCACCGTGGGCACCAGCTCCTTGATGATCTTGTTGATGCTG
GCCCGTGGCAGGGTCAGCTCGTCGTCCTCGGCGCTGGGCGGCAGTAGTTC
TTCCTGCGGATTCGACATGTCGACTGATAACT

BS16949.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4185-PA 552 NC2beta-RA 1..552 568..17 2760 100 Minus
CG8958-PA 1866 CG8958-RA 1201..1227 49..23 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:01:17
Subject Length Description Subject Range Query Range Score Percent Strand
NC2beta-RA 726 CG4185-RA 105..657 569..17 2765 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:01:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15007917..15008469 569..17 2765 100 Minus
Blast to na_te.dros performed 2015-02-13 12:01:17
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 375..608 246..15 156 56.7 Minus

BS16949.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:22 Download gff for BS16949.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4185-PA 1..552 17..568 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:56:20 Download gff for BS16949.3prime
Subject Subject Range Query Range Percent Splice Strand
NC2beta-RA 102..660 14..572 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:22:09 Download gff for BS16949.3prime
Subject Subject Range Query Range Percent Splice Strand
NC2beta-RA 102..660 14..572 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:22:09 Download gff for BS16949.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15007914..15008472 14..572 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:20 Download gff for BS16949.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15007914..15008472 14..572 99   Minus

BS16949.5prime Sequence

582 bp (582 high quality bases) assembled on 2007-05-15

> BS16949.5prime
GAAGTTATCAGTCGACATGTCGAATCCGCAGGAAGAACTACTGCCGCCCA
GCGCCGAGGACGACGAGCTGACCCTGCCACGGGCCAGCATCAACAAGATC
ATCAAGGAGCTGGTGCCCACGGTGCGGGTGGCCAACGAGAGTCGCGAGCT
GATACTCAACTGCTGCTCAGAGTTCATTCATCTGATCAGTTCGGAGGCCA
ACGAGGTGTGCAACATGCGCAACAAGAAGACGATAAACGCAGAGCACGTC
CTGGAGGCGTTGGAACGCTTGGGTTTTCACGACTACAAACAAGAGGCGGA
GGCCGTTCTGCACGACTGCAAGGAGGTGGCAGCCAAGCGAAGGCGCCAGA
GCACGCGCCTAGAGAACCTGGGCATTCCGGAGGAGGAGCTGCTGCGCCAG
CAGCAGGAGCTGTTCGCCAAGGCACGCGAGGAGCAGGCGCGCGAGGAGCA
GCAGCAGTGGATGAGCATGCAAGCGGCAGCAATGGTGCAGCGACCACCGC
TGGCAGACGGCTCCGTTGCCAGCAAGCCAAGTGAGGATGACGATGACGAT
GACGACGACGACTACTAGAAGCTTTCTAGACC

BS16949.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4185-PA 552 NC2beta-RA 1..552 17..568 2760 100 Plus
CG8958-PA 1866 CG8958-RA 1201..1227 536..562 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
NC2beta-RA 726 CG4185-RA 105..657 16..568 2765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15007917..15008469 16..568 2765 100 Plus
Blast to na_te.dros performed 2015-02-04 20:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 375..608 339..570 156 56.7 Plus

BS16949.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:19 Download gff for BS16949.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4185-PA 1..552 17..568 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:36:26 Download gff for BS16949.5prime
Subject Subject Range Query Range Percent Splice Strand
NC2beta-RA 102..660 13..571 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:36:34 Download gff for BS16949.5prime
Subject Subject Range Query Range Percent Splice Strand
NC2beta-RA 102..660 13..571 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:36:34 Download gff for BS16949.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15007914..15008472 13..571 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:36:26 Download gff for BS16949.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15007914..15008472 13..571 99   Plus

BS16949.complete Sequence

584 bp assembled on 2008-08-15

GenBank Submission: KX801364

> BS16949.complete
GAAGTTATCAGTCGACATGTCGAATCCGCAGGAAGAACTACTGCCGCCCA
GCGCCGAGGACGACGAGCTGACCCTGCCACGGGCCAGCATCAACAAGATC
ATCAAGGAGCTGGTGCCCACGGTGCGGGTGGCCAACGAGAGTCGCGAGCT
GATACTCAACTGCTGCTCAGAGTTCATTCATCTGATCAGTTCGGAGGCCA
ACGAGGTGTGCAACATGCGCAACAAGAAGACGATAAACGCAGAGCACGTC
CTGGAGGCGTTGGAACGCTTGGGTTTTCACGACTACAAACAAGAGGCGGA
GGCCGTTCTGCACGACTGCAAGGAGGTGGCAGCCAAGCGAAGGCGCCAGA
GCACGCGCCTAGAGAACCTGGGCATTCCGGAGGAGGAGCTGCTGCGCCAG
CAGCAGGAGCTGTTCGCCAAGGCACGCGAGGAGCAGGCGCGCGAGGAGCA
GCAGCAGTGGATGAGCATGCAAGCGGCAGCAATGGTGCAGCGACCACCGC
TGGCAGACGGCTCCGTTGCCAGCAAGCCAAGTGAGGATGACGATGACGAT
GACGACGACGACTACTAGAAGCTTTCTAGACCAT

BS16949.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
NC2beta-RA 552 CG4185-PA 1..552 17..568 2760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
NC2beta-RA 726 CG4185-RA 105..657 16..568 2765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15007917..15008469 16..568 2765 100 Plus
Blast to na_te.dros performed 2014-11-28 00:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 375..608 339..570 156 56.7 Plus

BS16949.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:59:47 Download gff for BS16949.complete
Subject Subject Range Query Range Percent Splice Strand
NC2beta-RA 96..654 13..571 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:08 Download gff for BS16949.complete
Subject Subject Range Query Range Percent Splice Strand
NC2beta-RA 106..657 17..568 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:00 Download gff for BS16949.complete
Subject Subject Range Query Range Percent Splice Strand
NC2beta-RA 100..651 17..568 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:31 Download gff for BS16949.complete
Subject Subject Range Query Range Percent Splice Strand
NC2beta-RA 106..657 17..568 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:31 Download gff for BS16949.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15007918..15008469 17..568 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:08 Download gff for BS16949.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15007918..15008469 17..568 100   Plus

BS16949.pep Sequence

Translation from 16 to 567

> BS16949.pep
MSNPQEELLPPSAEDDELTLPRASINKIIKELVPTVRVANESRELILNCC
SEFIHLISSEANEVCNMRNKKTINAEHVLEALERLGFHDYKQEAEAVLHD
CKEVAAKRRRQSTRLENLGIPEEELLRQQQELFAKAREEQAREEQQQWMS
MQAAAMVQRPPLADGSVASKPSEDDDDDDDDDY*

BS16949.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:53
Subject Length Description Subject Range Query Range Score Percent Strand
NC2beta-PA 183 CG4185-PA 1..183 1..183 935 100 Plus
Nf-YB-PB 156 CG10447-PB 43..127 20..103 142 41.2 Plus
Nf-YB-PA 156 CG10447-PA 43..127 20..103 142 41.2 Plus