Clone Sequence Records
BS16949.3prime Sequence
582 bp (582 high quality bases) assembled on 2007-05-15
> BS16949.3prime
ATGGTCTAGAAAGCTTCTAGTAGTCGTCGTCGTCATCGTCATCGTCATCC
TCACTTGGCTTGCTGGCAACGGAGCCGTCTGCCAGCGGTGGTCGCTGCAC
CATTGCTGCCGCTTGCATGCTCATCCACTGCTGCTGCTCCTCGCGCGCCT
GCTCCTCGCGTGCCTTGGCGAACAGCTCCTGCTGCTGGCGCAGCAGCTCC
TCCTCCGGAATGCCCAGGTTCTCTAGGCGCGTGCTCTGGCGCCTTCGCTT
GGCTGCCACCTCCTTGCAGTCGTGCAGAACGGCCTCCGCCTCTTGTTTGT
AGTCGTGAAAACCCAAGCGTTCCAACGCCTCCAGGACGTGCTCTGCGTTT
ATCGTCTTCTTGTTGCGCATGTTGCACACCTCGTTGGCCTCCGAACTGAT
CAGATGAATGAACTCTGAGCAGCAGTTGAGTATCAGCTCGCGACTCTCGT
TGGCCACCCGCACCGTGGGCACCAGCTCCTTGATGATCTTGTTGATGCTG
GCCCGTGGCAGGGTCAGCTCGTCGTCCTCGGCGCTGGGCGGCAGTAGTTC
TTCCTGCGGATTCGACATGTCGACTGATAACT
BS16949.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4185-PA | 552 | NC2beta-RA | 1..552 | 568..17 | 2760 | 100 | Minus |
CG8958-PA | 1866 | CG8958-RA | 1201..1227 | 49..23 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:01:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NC2beta-RA | 726 | CG4185-RA | 105..657 | 569..17 | 2765 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:01:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15007917..15008469 | 569..17 | 2765 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 12:01:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 375..608 | 246..15 | 156 | 56.7 | Minus |
BS16949.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:22 Download gff for
BS16949.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4185-PA | 1..552 | 17..568 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:56:20 Download gff for
BS16949.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NC2beta-RA | 102..660 | 14..572 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:22:09 Download gff for
BS16949.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NC2beta-RA | 102..660 | 14..572 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:22:09 Download gff for
BS16949.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15007914..15008472 | 14..572 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:20 Download gff for
BS16949.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15007914..15008472 | 14..572 | 99 | | Minus |
BS16949.5prime Sequence
582 bp (582 high quality bases) assembled on 2007-05-15
> BS16949.5prime
GAAGTTATCAGTCGACATGTCGAATCCGCAGGAAGAACTACTGCCGCCCA
GCGCCGAGGACGACGAGCTGACCCTGCCACGGGCCAGCATCAACAAGATC
ATCAAGGAGCTGGTGCCCACGGTGCGGGTGGCCAACGAGAGTCGCGAGCT
GATACTCAACTGCTGCTCAGAGTTCATTCATCTGATCAGTTCGGAGGCCA
ACGAGGTGTGCAACATGCGCAACAAGAAGACGATAAACGCAGAGCACGTC
CTGGAGGCGTTGGAACGCTTGGGTTTTCACGACTACAAACAAGAGGCGGA
GGCCGTTCTGCACGACTGCAAGGAGGTGGCAGCCAAGCGAAGGCGCCAGA
GCACGCGCCTAGAGAACCTGGGCATTCCGGAGGAGGAGCTGCTGCGCCAG
CAGCAGGAGCTGTTCGCCAAGGCACGCGAGGAGCAGGCGCGCGAGGAGCA
GCAGCAGTGGATGAGCATGCAAGCGGCAGCAATGGTGCAGCGACCACCGC
TGGCAGACGGCTCCGTTGCCAGCAAGCCAAGTGAGGATGACGATGACGAT
GACGACGACGACTACTAGAAGCTTTCTAGACC
BS16949.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4185-PA | 552 | NC2beta-RA | 1..552 | 17..568 | 2760 | 100 | Plus |
CG8958-PA | 1866 | CG8958-RA | 1201..1227 | 536..562 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:54:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NC2beta-RA | 726 | CG4185-RA | 105..657 | 16..568 | 2765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:54:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15007917..15008469 | 16..568 | 2765 | 100 | Plus |
Blast to na_te.dros performed 2015-02-04 20:54:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 375..608 | 339..570 | 156 | 56.7 | Plus |
BS16949.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:19 Download gff for
BS16949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4185-PA | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:36:26 Download gff for
BS16949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NC2beta-RA | 102..660 | 13..571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:36:34 Download gff for
BS16949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NC2beta-RA | 102..660 | 13..571 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:36:34 Download gff for
BS16949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15007914..15008472 | 13..571 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:36:26 Download gff for
BS16949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15007914..15008472 | 13..571 | 99 | | Plus |
BS16949.complete Sequence
584 bp assembled on 2008-08-15
GenBank Submission: KX801364
> BS16949.complete
GAAGTTATCAGTCGACATGTCGAATCCGCAGGAAGAACTACTGCCGCCCA
GCGCCGAGGACGACGAGCTGACCCTGCCACGGGCCAGCATCAACAAGATC
ATCAAGGAGCTGGTGCCCACGGTGCGGGTGGCCAACGAGAGTCGCGAGCT
GATACTCAACTGCTGCTCAGAGTTCATTCATCTGATCAGTTCGGAGGCCA
ACGAGGTGTGCAACATGCGCAACAAGAAGACGATAAACGCAGAGCACGTC
CTGGAGGCGTTGGAACGCTTGGGTTTTCACGACTACAAACAAGAGGCGGA
GGCCGTTCTGCACGACTGCAAGGAGGTGGCAGCCAAGCGAAGGCGCCAGA
GCACGCGCCTAGAGAACCTGGGCATTCCGGAGGAGGAGCTGCTGCGCCAG
CAGCAGGAGCTGTTCGCCAAGGCACGCGAGGAGCAGGCGCGCGAGGAGCA
GCAGCAGTGGATGAGCATGCAAGCGGCAGCAATGGTGCAGCGACCACCGC
TGGCAGACGGCTCCGTTGCCAGCAAGCCAAGTGAGGATGACGATGACGAT
GACGACGACGACTACTAGAAGCTTTCTAGACCAT
BS16949.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:46:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NC2beta-RA | 552 | CG4185-PA | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:46:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NC2beta-RA | 726 | CG4185-RA | 105..657 | 16..568 | 2765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:45:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15007917..15008469 | 16..568 | 2765 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:45:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 375..608 | 339..570 | 156 | 56.7 | Plus |
BS16949.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:59:47 Download gff for
BS16949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NC2beta-RA | 96..654 | 13..571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:08 Download gff for
BS16949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NC2beta-RA | 106..657 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:00 Download gff for
BS16949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NC2beta-RA | 100..651 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:31 Download gff for
BS16949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NC2beta-RA | 106..657 | 17..568 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:31 Download gff for
BS16949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15007918..15008469 | 17..568 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:08 Download gff for
BS16949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15007918..15008469 | 17..568 | 100 | | Plus |
BS16949.pep Sequence
Translation from 16 to 567
> BS16949.pep
MSNPQEELLPPSAEDDELTLPRASINKIIKELVPTVRVANESRELILNCC
SEFIHLISSEANEVCNMRNKKTINAEHVLEALERLGFHDYKQEAEAVLHD
CKEVAAKRRRQSTRLENLGIPEEELLRQQQELFAKAREEQAREEQQQWMS
MQAAAMVQRPPLADGSVASKPSEDDDDDDDDDY*
BS16949.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NC2beta-PA | 183 | CG4185-PA | 1..183 | 1..183 | 935 | 100 | Plus |
Nf-YB-PB | 156 | CG10447-PB | 43..127 | 20..103 | 142 | 41.2 | Plus |
Nf-YB-PA | 156 | CG10447-PA | 43..127 | 20..103 | 142 | 41.2 | Plus |