Clone BS16950 Report

Search the DGRC for BS16950

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:169
Well:50
Vector:pDNR-Dual
Associated Gene/Transcriptl(3)02640-RA
Protein status:BS16950.pep: full length peptide match
Sequenced Size:1991

Clone Sequence Records

BS16950.3prime Sequence

908 bp (831 high quality bases) assembled on 2007-05-15

> BS16950.3prime
ATGGTCTAGAAAGCTTTCAAGACGACGCCACTTTGCCGTGAATCTCTGCC
TGGGCCACCTTCATCACGTCGAGGGCGCCGCGCTTGATCAGGTCCTCCGC
CAGCGTCTTGCCCAGCTGGTTGGCCTTCTCGTAGATGCCCCGACTGTGAC
AGGCGTGCTGGTAGAGACCGCAGAACAGGTTTTCCACATCCTCAATGAGC
ACCGAGTGCTGCGGCGTCGGCTGCTCCTCGTCGGCGTAGTCGAACATTTG
GACCGTTTTCTGCAGGAACGGGCACTTGGCTGTGGCTGCGTTTCCGTTGT
CCTTAGCCGGCGCCTCAAGACCGCTGCCCTGATGCATGGCCGCAAAGGGA
CACTTGGAGGAAGTTGCAACATTATCCACTTCATCGCCAGCGCTGCTGGC
ATTACTGGCTCTGCTGCTCGGTGGCGTGGGCAAAATAGAAGCTGATGCTC
CTGCCACACCGCCAGTCACTGGACACTTTCCAGCTTGGGCAAAGGATACC
TTCACATCGTTGTTAACGTACGGACATTCGCCCATGAAGTCCTGACCCAC
GGGCATCTGTAGTGGACAGTGAGCAGTGGTGGCCGATTCCCCTCCACTTC
CACTCTTGGCGCTGAAGGAATCCCCAGAGTCTGCATGCGCTACTGGACAT
TTGGCAGGAACCATTGCCTGATTGTGCGGCACTGGGCACTGGCCCATCAC
TTCCTGACCGCCCACCAAGCGAAGAGGGCACTGACGGGGAGTGGTGTTCA
CATTGTTGGTATCCGCATCGCCACCACCACTAACTCCGGTAGGTCCCACA
GCATTGTTGTTACTCAGCACTGGGCAGTGACTGGCCAGATCCGAGAGCTG
ATCCACAGTGTAACCGGGAGAGAGCTGCGCAAGCACCCGCATCCTCACAG
ATCACTGG

BS16950.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9165-PA 1959 l(3)02640-RA 1109..1959 867..17 4230 99.8 Minus
CG9165-PA 1959 l(3)02640-RA 1069..1110 908..867 185 97.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)02640-RA 2556 CG9165-RA 1421..2311 908..17 4405 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1338280..1339170 908..17 4380 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 15:56:07 has no hits.

BS16950.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:33 Download gff for BS16950.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9165-PA 1069..1959 17..908 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:19:47 Download gff for BS16950.3prime
Subject Subject Range Query Range Percent Splice Strand
l(3)02640-RA 1421..2313 13..908 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:27:35 Download gff for BS16950.3prime
Subject Subject Range Query Range Percent Splice Strand
l(3)02640-RA 1421..2313 13..908 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:27:35 Download gff for BS16950.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1338280..1339172 13..908 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:19:47 Download gff for BS16950.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1338280..1339172 13..908 99   Minus

BS16950.5prime Sequence

868 bp (747 high quality bases) assembled on 2007-05-15

> BS16950.5prime
GAAGTTATCAGTCGACATGTCGGCGCAGGAAAAGGTTATACGCGTTGGAT
CGCGAAAGAGCGAGCTCGCTCTGATTCAGACCAAACATGTCATCGGCCGC
CTGCAGAAGCTATATCCCAAGCAGAAATTCGAGATCCACACCATGTCGAC
ATTTGGCGATCGTGTGCTGAACGTTTCCCTTCCTAAGATTGGCGAGAAGA
GCCTGTTCACCCGCGACCTCGAGGATGCGCTGCGCAACGGTGGCGTTGAC
TTTGTGGTGCACTCCCTCAAGGATCTGCCTACAGCCCTGCCAACAGGAAT
GGCCATCGGAGCCGTGCTGGAGCGAGAAGATGCGCGGGACGCCCTCGTTC
TGCGGGAGAACTTCAAGGGCCACACGATAGCCTCGCTTCCAAAGGGCAGC
GTGATTGGAACCTCATCTCTTCGTCGCACAGCCCAGATTCGCAGGATGTA
TCCCCATTTGACGGTGTGCGACATCCGTGGAAATCTAAATACTCGACTGG
CCAAGCTGGATGCAGCCGATTCCAAGTTCTCCGGCATCATACTCGCTCAG
GCCGGCTTGGTGAGAATGGGCTGGATGAGTCGTATTAGCCAGGTGCTGGA
GCCGACCGACTTGCTCTATGCTGTTGGCCAAGGAGCCCTGGCCGTGGAGT
GTCGGGCTAATGACGACCAAGTGCTGGCAATGCTGCAGAAACTTATGTGC
CTGAATACAACGTGCCGCATCCTAGCAGAACGAAGCTTCCTGAAGACTTT
GGGGAGGGGGTTGCTCCGCCCCCGTGGCTGTTTGGAGCAACTTAAAGGGC
GAGCCCTTGAATGGAAACAGCCAGGAGGTGGGACTATCCCTCACCGGTGC
AAGTTGGAGCCTGGATGG

BS16950.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9165-PA 1959 l(3)02640-RA 1..737 17..753 3685 100 Plus
CG9165-PA 1959 l(3)02640-RA 735..851 752..868 535 98.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)02640-RA 2556 CG9165-RA 353..1203 17..868 4205 99.6 Plus
CG2211-RA 1941 CG2211-RA 72..119 64..17 240 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1337602..1338062 407..868 2230 99.4 Plus
3L 28110227 3L 1337271..1337541 138..408 1355 100 Plus
3L 28110227 3L 1335942..1336016 63..137 375 100 Plus
3L 28110227 3L 1335241..1335288 17..64 240 100 Plus
Blast to na_te.dros performed on 2015-02-13 11:54:07 has no hits.

BS16950.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:28 Download gff for BS16950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9165-PA 1..851 17..868 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:46:28 Download gff for BS16950.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)02640-RA 353..1203 17..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:17:52 Download gff for BS16950.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)02640-RA 353..1203 17..868 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:17:52 Download gff for BS16950.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1335241..1335288 17..64 100 -> Plus
3L 1335944..1336016 65..137 100 -> Plus
3L 1337271..1337540 138..407 100 -> Plus
3L 1337603..1338062 408..868 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:46:28 Download gff for BS16950.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1335241..1335288 17..64 100 -> Plus
arm_3L 1335944..1336016 65..137 100 -> Plus
arm_3L 1337271..1337540 138..407 100 -> Plus
arm_3L 1337603..1338062 408..868 99   Plus

BS16950.complete Sequence

1991 bp assembled on 2009-12-07

GenBank Submission: KX801943

> BS16950.complete
GAAGTTATCAGTCGACATGTCGGCGCAGGAAAAGGTTATACGCGTTGGAT
CGCGAAAGAGCGAGCTCGCTCTGATTCAGACCAAACATGTCATCGGCCGC
CTGCAGAAGCTATATCCCAAGCAGAAATTCGAGATCCACACCATGTCGAC
ATTTGGCGATCGTGTGCTGAACGTTTCCCTTCCTAAGATTGGCGAGAAGA
GCCTGTTCACCCGCGACCTCGAGGATGCGCTGCGCAACGGTGGCGTTGAC
TTTGTGGTGCACTCCCTCAAGGATCTGCCTACAGCCCTGCCAACAGGAAT
GGCCATCGGAGCCGTGCTGGAGCGAGAAGATGCGCGGGACGCCCTCGTTC
TGCGGGAGAACTTCAAGGGCCACACGATAGCCTCGCTTCCAAAGGGCAGC
GTGATTGGAACCTCATCTCTTCGTCGCACAGCCCAGATTCGCAGGATGTA
TCCCCATTTGACGGTGTGCGACATCCGTGGAAATCTAAATACTCGACTGG
CCAAGCTGGATGCAGCCGATTCCAAGTTCTCCGGCATCATACTCGCTCAG
GCCGGCTTGGTGAGAATGGGCTGGATGAGTCGTATTAGCCAGGTGCTGGA
GCCGACCGACTTGCTCTATGCTGTTGGCCAAGGAGCCCTGGCCGTGGAGT
GTCGGGCTAATGACGACCAAGTGCTGGCAATGCTGCAGAAACTTATGTGC
CTGAATACAACGTGCCGCATCCTAGCAGAACGAAGCTTCCTGAAGACTTT
GGGAGGGGGTTGCTCCGCCCCCGTGGCTGTTTGGAGCAACTTAAAGGGCG
AGCCCTTGAATGGAAACAGCCAGGAGGTGGGACTATCCCTCACCGGTGCA
GTTTGGAGCCTGGATGGTGCAATAGAGATACGGAACCATCTGGCATGTGC
CTTAAATGAACAAAAATTGGAGGGGGACCAACGGAAACGAGGGGCCCAGG
AGGCCACCAGCCAGTTGCAGGAGGAGACCAGCAGCAGCTGCGATTCTCCC
CCGGCCACGAAGCGTGCCAGAAATGGCAACGACAGTTCGGGTTCGGACTC
GAATTCCAGCAGTCCGCGCCAGCAAGGCAGCCCTCCAGTGATCTGTGAGG
ATGCGGCTGCTTGCGCAGCTCTCTCCGGTTACACTGTGGATCAGCTCTCG
GATCTGGCCAGTCACTGCCCAGTGCTGAGTAACAACAATGCTGTGGGACC
TACCGGAGTTAGTGGTGGTGGCGATGCGGATACCAACAATGTGAACACCA
CTCCCCGTCAGTGCCCTCTTCGCTTGGTGGGCGGTCAGGAAGTGATGGGC
CAGTGCCCAGTGCCGCACAATCAGGCAATGGTTCCTGCCAAATGTCCAGT
AGCGCATGCAGACTCTGGGGATTCCTTCAGCGCCAAGAGTGGAAGTGGAG
GGGAATCGGCCACCACTGCTCACTGTCCACTACAGATGCCCGTGGGTCAG
GACTTCATGGGCGAATGTCCGTACGTTAACAACGATGTGAAGGTATCCTT
TGCCCAAGCTGGAAAGTGTCCAGTGACTGGCGGTGTGGCAGGAGCATCAG
CTTCTATTTTGCCCACGCCACCGAGCAGCAGAGCCAGTAATGCCAGCAGC
GCTGGCGATGAAGTGGATAATGTTGCAACTTCCTCCAAGTGTCCCTTTGC
GGCCATGCATCAGGGCAGCGGTCTTGAGGCGCCGGCTAAGGACAACGGAA
ACGCAGCCACAGCCAAGTGCCCGTTCCTGCAGAAAACGGTCCAAATGTTC
GACTACGCCGACGAGGAGCAGCCGACGCCGCAGCACTCGGTGCTCATTGA
GGATGTGGAAAACCTGTTCTGCGGTCTCTACCAGCACGCCTGTCACAGTC
GGGGCATCTACGAGAAGGCCAACCAGCTGGGCAAGACGCTGGCGGAGGAC
CTGATCAAGCGCGGCGCCCTCGACGTGATGAAGGTGGCCCAGGCAGAGAT
TCACGGCAAAGTGGCGTCGTCTTGAAAGCTTTCTAGACCAT

BS16950.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)02640-RA 1959 CG9165-PA 1..1959 17..1975 9780 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)02640-RA 2556 CG9165-RA 353..2311 17..1975 9780 99.9 Plus
CG2211-RA 1941 CG2211-RA 72..119 64..17 240 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1337602..1339170 407..1975 7830 99.9 Plus
3L 28110227 3L 1337271..1337541 138..408 1355 100 Plus
3L 28110227 3L 1335942..1336016 63..137 375 100 Plus
3L 28110227 3L 1335241..1335288 17..64 240 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:12:09 has no hits.

BS16950.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:42 Download gff for BS16950.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)02640-RA 365..2322 17..1974 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:30 Download gff for BS16950.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)02640-RA 353..2310 17..1974 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:42 Download gff for BS16950.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)02640-RA 365..2322 17..1974 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:04 Download gff for BS16950.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)02640-RA 353..2310 17..1974 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:04 Download gff for BS16950.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1335241..1335288 17..64 100 -> Plus
3L 1335944..1336016 65..137 100 -> Plus
3L 1337271..1337540 138..407 100 -> Plus
3L 1337603..1339169 408..1974 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:30 Download gff for BS16950.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1335241..1335288 17..64 100 -> Plus
arm_3L 1335944..1336016 65..137 100 -> Plus
arm_3L 1337271..1337540 138..407 100 -> Plus
arm_3L 1337603..1339169 408..1974 99   Plus

BS16950.pep Sequence

Translation from 16 to 1974

> BS16950.pep
MSAQEKVIRVGSRKSELALIQTKHVIGRLQKLYPKQKFEIHTMSTFGDRV
LNVSLPKIGEKSLFTRDLEDALRNGGVDFVVHSLKDLPTALPTGMAIGAV
LEREDARDALVLRENFKGHTIASLPKGSVIGTSSLRRTAQIRRMYPHLTV
CDIRGNLNTRLAKLDAADSKFSGIILAQAGLVRMGWMSRISQVLEPTDLL
YAVGQGALAVECRANDDQVLAMLQKLMCLNTTCRILAERSFLKTLGGGCS
APVAVWSNLKGEPLNGNSQEVGLSLTGAVWSLDGAIEIRNHLACALNEQK
LEGDQRKRGAQEATSQLQEETSSSCDSPPATKRARNGNDSSGSDSNSSSP
RQQGSPPVICEDAAACAALSGYTVDQLSDLASHCPVLSNNNAVGPTGVSG
GGDADTNNVNTTPRQCPLRLVGGQEVMGQCPVPHNQAMVPAKCPVAHADS
GDSFSAKSGSGGESATTAHCPLQMPVGQDFMGECPYVNNDVKVSFAQAGK
CPVTGGVAGASASILPTPPSSRASNASSAGDEVDNVATSSKCPFAAMHQG
SGLEAPAKDNGNAATAKCPFLQKTVQMFDYADEEQPTPQHSVLIEDVENL
FCGLYQHACHSRGIYEKANQLGKTLAEDLIKRGALDVMKVAQAEIHGKVA
SS*

BS16950.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)02640-PA 652 CG9165-PA 1..652 1..652 3366 100 Plus