Clone Sequence Records
BS16950.3prime Sequence
908 bp (831 high quality bases) assembled on 2007-05-15
> BS16950.3prime
ATGGTCTAGAAAGCTTTCAAGACGACGCCACTTTGCCGTGAATCTCTGCC
TGGGCCACCTTCATCACGTCGAGGGCGCCGCGCTTGATCAGGTCCTCCGC
CAGCGTCTTGCCCAGCTGGTTGGCCTTCTCGTAGATGCCCCGACTGTGAC
AGGCGTGCTGGTAGAGACCGCAGAACAGGTTTTCCACATCCTCAATGAGC
ACCGAGTGCTGCGGCGTCGGCTGCTCCTCGTCGGCGTAGTCGAACATTTG
GACCGTTTTCTGCAGGAACGGGCACTTGGCTGTGGCTGCGTTTCCGTTGT
CCTTAGCCGGCGCCTCAAGACCGCTGCCCTGATGCATGGCCGCAAAGGGA
CACTTGGAGGAAGTTGCAACATTATCCACTTCATCGCCAGCGCTGCTGGC
ATTACTGGCTCTGCTGCTCGGTGGCGTGGGCAAAATAGAAGCTGATGCTC
CTGCCACACCGCCAGTCACTGGACACTTTCCAGCTTGGGCAAAGGATACC
TTCACATCGTTGTTAACGTACGGACATTCGCCCATGAAGTCCTGACCCAC
GGGCATCTGTAGTGGACAGTGAGCAGTGGTGGCCGATTCCCCTCCACTTC
CACTCTTGGCGCTGAAGGAATCCCCAGAGTCTGCATGCGCTACTGGACAT
TTGGCAGGAACCATTGCCTGATTGTGCGGCACTGGGCACTGGCCCATCAC
TTCCTGACCGCCCACCAAGCGAAGAGGGCACTGACGGGGAGTGGTGTTCA
CATTGTTGGTATCCGCATCGCCACCACCACTAACTCCGGTAGGTCCCACA
GCATTGTTGTTACTCAGCACTGGGCAGTGACTGGCCAGATCCGAGAGCTG
ATCCACAGTGTAACCGGGAGAGAGCTGCGCAAGCACCCGCATCCTCACAG
ATCACTGG
BS16950.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9165-PA | 1959 | l(3)02640-RA | 1109..1959 | 867..17 | 4230 | 99.8 | Minus |
CG9165-PA | 1959 | l(3)02640-RA | 1069..1110 | 908..867 | 185 | 97.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:56:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)02640-RA | 2556 | CG9165-RA | 1421..2311 | 908..17 | 4405 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:56:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1338280..1339170 | 908..17 | 4380 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:56:07 has no hits.
BS16950.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:33 Download gff for
BS16950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9165-PA | 1069..1959 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:19:47 Download gff for
BS16950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)02640-RA | 1421..2313 | 13..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:27:35 Download gff for
BS16950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)02640-RA | 1421..2313 | 13..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:27:35 Download gff for
BS16950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1338280..1339172 | 13..908 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:19:47 Download gff for
BS16950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1338280..1339172 | 13..908 | 99 | | Minus |
BS16950.5prime Sequence
868 bp (747 high quality bases) assembled on 2007-05-15
> BS16950.5prime
GAAGTTATCAGTCGACATGTCGGCGCAGGAAAAGGTTATACGCGTTGGAT
CGCGAAAGAGCGAGCTCGCTCTGATTCAGACCAAACATGTCATCGGCCGC
CTGCAGAAGCTATATCCCAAGCAGAAATTCGAGATCCACACCATGTCGAC
ATTTGGCGATCGTGTGCTGAACGTTTCCCTTCCTAAGATTGGCGAGAAGA
GCCTGTTCACCCGCGACCTCGAGGATGCGCTGCGCAACGGTGGCGTTGAC
TTTGTGGTGCACTCCCTCAAGGATCTGCCTACAGCCCTGCCAACAGGAAT
GGCCATCGGAGCCGTGCTGGAGCGAGAAGATGCGCGGGACGCCCTCGTTC
TGCGGGAGAACTTCAAGGGCCACACGATAGCCTCGCTTCCAAAGGGCAGC
GTGATTGGAACCTCATCTCTTCGTCGCACAGCCCAGATTCGCAGGATGTA
TCCCCATTTGACGGTGTGCGACATCCGTGGAAATCTAAATACTCGACTGG
CCAAGCTGGATGCAGCCGATTCCAAGTTCTCCGGCATCATACTCGCTCAG
GCCGGCTTGGTGAGAATGGGCTGGATGAGTCGTATTAGCCAGGTGCTGGA
GCCGACCGACTTGCTCTATGCTGTTGGCCAAGGAGCCCTGGCCGTGGAGT
GTCGGGCTAATGACGACCAAGTGCTGGCAATGCTGCAGAAACTTATGTGC
CTGAATACAACGTGCCGCATCCTAGCAGAACGAAGCTTCCTGAAGACTTT
GGGGAGGGGGTTGCTCCGCCCCCGTGGCTGTTTGGAGCAACTTAAAGGGC
GAGCCCTTGAATGGAAACAGCCAGGAGGTGGGACTATCCCTCACCGGTGC
AAGTTGGAGCCTGGATGG
BS16950.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9165-PA | 1959 | l(3)02640-RA | 1..737 | 17..753 | 3685 | 100 | Plus |
CG9165-PA | 1959 | l(3)02640-RA | 735..851 | 752..868 | 535 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:54:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)02640-RA | 2556 | CG9165-RA | 353..1203 | 17..868 | 4205 | 99.6 | Plus |
CG2211-RA | 1941 | CG2211-RA | 72..119 | 64..17 | 240 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:54:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1337602..1338062 | 407..868 | 2230 | 99.4 | Plus |
3L | 28110227 | 3L | 1337271..1337541 | 138..408 | 1355 | 100 | Plus |
3L | 28110227 | 3L | 1335942..1336016 | 63..137 | 375 | 100 | Plus |
3L | 28110227 | 3L | 1335241..1335288 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 11:54:07 has no hits.
BS16950.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:28 Download gff for
BS16950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9165-PA | 1..851 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:46:28 Download gff for
BS16950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)02640-RA | 353..1203 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:17:52 Download gff for
BS16950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)02640-RA | 353..1203 | 17..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:17:52 Download gff for
BS16950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1335241..1335288 | 17..64 | 100 | -> | Plus |
3L | 1335944..1336016 | 65..137 | 100 | -> | Plus |
3L | 1337271..1337540 | 138..407 | 100 | -> | Plus |
3L | 1337603..1338062 | 408..868 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:46:28 Download gff for
BS16950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1335241..1335288 | 17..64 | 100 | -> | Plus |
arm_3L | 1335944..1336016 | 65..137 | 100 | -> | Plus |
arm_3L | 1337271..1337540 | 138..407 | 100 | -> | Plus |
arm_3L | 1337603..1338062 | 408..868 | 99 | | Plus |
BS16950.complete Sequence
1991 bp assembled on 2009-12-07
GenBank Submission: KX801943
> BS16950.complete
GAAGTTATCAGTCGACATGTCGGCGCAGGAAAAGGTTATACGCGTTGGAT
CGCGAAAGAGCGAGCTCGCTCTGATTCAGACCAAACATGTCATCGGCCGC
CTGCAGAAGCTATATCCCAAGCAGAAATTCGAGATCCACACCATGTCGAC
ATTTGGCGATCGTGTGCTGAACGTTTCCCTTCCTAAGATTGGCGAGAAGA
GCCTGTTCACCCGCGACCTCGAGGATGCGCTGCGCAACGGTGGCGTTGAC
TTTGTGGTGCACTCCCTCAAGGATCTGCCTACAGCCCTGCCAACAGGAAT
GGCCATCGGAGCCGTGCTGGAGCGAGAAGATGCGCGGGACGCCCTCGTTC
TGCGGGAGAACTTCAAGGGCCACACGATAGCCTCGCTTCCAAAGGGCAGC
GTGATTGGAACCTCATCTCTTCGTCGCACAGCCCAGATTCGCAGGATGTA
TCCCCATTTGACGGTGTGCGACATCCGTGGAAATCTAAATACTCGACTGG
CCAAGCTGGATGCAGCCGATTCCAAGTTCTCCGGCATCATACTCGCTCAG
GCCGGCTTGGTGAGAATGGGCTGGATGAGTCGTATTAGCCAGGTGCTGGA
GCCGACCGACTTGCTCTATGCTGTTGGCCAAGGAGCCCTGGCCGTGGAGT
GTCGGGCTAATGACGACCAAGTGCTGGCAATGCTGCAGAAACTTATGTGC
CTGAATACAACGTGCCGCATCCTAGCAGAACGAAGCTTCCTGAAGACTTT
GGGAGGGGGTTGCTCCGCCCCCGTGGCTGTTTGGAGCAACTTAAAGGGCG
AGCCCTTGAATGGAAACAGCCAGGAGGTGGGACTATCCCTCACCGGTGCA
GTTTGGAGCCTGGATGGTGCAATAGAGATACGGAACCATCTGGCATGTGC
CTTAAATGAACAAAAATTGGAGGGGGACCAACGGAAACGAGGGGCCCAGG
AGGCCACCAGCCAGTTGCAGGAGGAGACCAGCAGCAGCTGCGATTCTCCC
CCGGCCACGAAGCGTGCCAGAAATGGCAACGACAGTTCGGGTTCGGACTC
GAATTCCAGCAGTCCGCGCCAGCAAGGCAGCCCTCCAGTGATCTGTGAGG
ATGCGGCTGCTTGCGCAGCTCTCTCCGGTTACACTGTGGATCAGCTCTCG
GATCTGGCCAGTCACTGCCCAGTGCTGAGTAACAACAATGCTGTGGGACC
TACCGGAGTTAGTGGTGGTGGCGATGCGGATACCAACAATGTGAACACCA
CTCCCCGTCAGTGCCCTCTTCGCTTGGTGGGCGGTCAGGAAGTGATGGGC
CAGTGCCCAGTGCCGCACAATCAGGCAATGGTTCCTGCCAAATGTCCAGT
AGCGCATGCAGACTCTGGGGATTCCTTCAGCGCCAAGAGTGGAAGTGGAG
GGGAATCGGCCACCACTGCTCACTGTCCACTACAGATGCCCGTGGGTCAG
GACTTCATGGGCGAATGTCCGTACGTTAACAACGATGTGAAGGTATCCTT
TGCCCAAGCTGGAAAGTGTCCAGTGACTGGCGGTGTGGCAGGAGCATCAG
CTTCTATTTTGCCCACGCCACCGAGCAGCAGAGCCAGTAATGCCAGCAGC
GCTGGCGATGAAGTGGATAATGTTGCAACTTCCTCCAAGTGTCCCTTTGC
GGCCATGCATCAGGGCAGCGGTCTTGAGGCGCCGGCTAAGGACAACGGAA
ACGCAGCCACAGCCAAGTGCCCGTTCCTGCAGAAAACGGTCCAAATGTTC
GACTACGCCGACGAGGAGCAGCCGACGCCGCAGCACTCGGTGCTCATTGA
GGATGTGGAAAACCTGTTCTGCGGTCTCTACCAGCACGCCTGTCACAGTC
GGGGCATCTACGAGAAGGCCAACCAGCTGGGCAAGACGCTGGCGGAGGAC
CTGATCAAGCGCGGCGCCCTCGACGTGATGAAGGTGGCCCAGGCAGAGAT
TCACGGCAAAGTGGCGTCGTCTTGAAAGCTTTCTAGACCAT
BS16950.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:12:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)02640-RA | 1959 | CG9165-PA | 1..1959 | 17..1975 | 9780 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:12:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)02640-RA | 2556 | CG9165-RA | 353..2311 | 17..1975 | 9780 | 99.9 | Plus |
CG2211-RA | 1941 | CG2211-RA | 72..119 | 64..17 | 240 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:12:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1337602..1339170 | 407..1975 | 7830 | 99.9 | Plus |
3L | 28110227 | 3L | 1337271..1337541 | 138..408 | 1355 | 100 | Plus |
3L | 28110227 | 3L | 1335942..1336016 | 63..137 | 375 | 100 | Plus |
3L | 28110227 | 3L | 1335241..1335288 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:12:09 has no hits.
BS16950.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:42 Download gff for
BS16950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)02640-RA | 365..2322 | 17..1974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:30 Download gff for
BS16950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)02640-RA | 353..2310 | 17..1974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:42 Download gff for
BS16950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)02640-RA | 365..2322 | 17..1974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:04 Download gff for
BS16950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)02640-RA | 353..2310 | 17..1974 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:04 Download gff for
BS16950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1335241..1335288 | 17..64 | 100 | -> | Plus |
3L | 1335944..1336016 | 65..137 | 100 | -> | Plus |
3L | 1337271..1337540 | 138..407 | 100 | -> | Plus |
3L | 1337603..1339169 | 408..1974 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:30 Download gff for
BS16950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1335241..1335288 | 17..64 | 100 | -> | Plus |
arm_3L | 1335944..1336016 | 65..137 | 100 | -> | Plus |
arm_3L | 1337271..1337540 | 138..407 | 100 | -> | Plus |
arm_3L | 1337603..1339169 | 408..1974 | 99 | | Plus |
BS16950.pep Sequence
Translation from 16 to 1974
> BS16950.pep
MSAQEKVIRVGSRKSELALIQTKHVIGRLQKLYPKQKFEIHTMSTFGDRV
LNVSLPKIGEKSLFTRDLEDALRNGGVDFVVHSLKDLPTALPTGMAIGAV
LEREDARDALVLRENFKGHTIASLPKGSVIGTSSLRRTAQIRRMYPHLTV
CDIRGNLNTRLAKLDAADSKFSGIILAQAGLVRMGWMSRISQVLEPTDLL
YAVGQGALAVECRANDDQVLAMLQKLMCLNTTCRILAERSFLKTLGGGCS
APVAVWSNLKGEPLNGNSQEVGLSLTGAVWSLDGAIEIRNHLACALNEQK
LEGDQRKRGAQEATSQLQEETSSSCDSPPATKRARNGNDSSGSDSNSSSP
RQQGSPPVICEDAAACAALSGYTVDQLSDLASHCPVLSNNNAVGPTGVSG
GGDADTNNVNTTPRQCPLRLVGGQEVMGQCPVPHNQAMVPAKCPVAHADS
GDSFSAKSGSGGESATTAHCPLQMPVGQDFMGECPYVNNDVKVSFAQAGK
CPVTGGVAGASASILPTPPSSRASNASSAGDEVDNVATSSKCPFAAMHQG
SGLEAPAKDNGNAATAKCPFLQKTVQMFDYADEEQPTPQHSVLIEDVENL
FCGLYQHACHSRGIYEKANQLGKTLAEDLIKRGALDVMKVAQAEIHGKVA
SS*
BS16950.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:18:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)02640-PA | 652 | CG9165-PA | 1..652 | 1..652 | 3366 | 100 | Plus |