Clone Sequence Records
BS16953.3prime Sequence
873 bp (870 high quality bases) assembled on 2007-05-15
> BS16953.3prime
ATGGTCTAGAAAGCTTTTATTGCATTTTCGACACCTCGAACTTGGTGTTG
ATGATTTCCTCATCGGAGTCCAGGATGGGCAACGCCGAGTCCGCCATCGA
AGACGGTATGTTCTCCTCCACCCAGCGCAGGTCGTCTTCCTCGGTGGTCG
TGGCATTTCGTGAAGTCGTCGACGTTTTCGGCGTTCCATTCTGGCCGCGC
ATTTTCACGCCGTAGGCATCCGCGACGAACTGATCCTCCTCGTCCTCATC
GTCTTCGTCTTCCGGGTTATCCAGCAGCGGAGTGAAGGCATAGCGCTGGT
TGTTATTCGTCGGTCGCCATAGAATCATAATCACCAGCAGCAGAACCGAA
AACAAAATGTGCCAAAAGCCAGTATCCACCCAAATGTCGCGCCAGCCAGG
CGTGCAATTCTCGACCCTACGCAAACGCAAAGCAAACAGCATGAATATGA
CGGAAGCGATAACAGCGAAGATCAGCGTGTTGGTGAAGTGCCTGTACAGT
GAGAGCTTGACCATATTCCTCCTCAGTCGGAGAGTGCGAGTTGTCTGCAC
GAGCGAGGTGAATATCCACCAGCATATTCCTGTGTCCAGCACCGCCAGTG
GAATGCTCGCCACCAGCAGCTCGCTGCGATCGGTCTTCACATTGGTGATA
CGCAAGTAGCTCTCCACGCAGGCCAGCACAAAGTAGAGGGTTCCCACGCC
CACCACGCGATGCAGCATGGGTCCCAAACGGGGTTTGACAATGCCAAAGC
CGAGACTCATGATGATGACCAGCATCCTGGCCAGCGTGCGCTTCGCACAG
GACACAAACTCGGCCACCAGTTCGGCGTGCTGAACTGCAACACCCTTGTT
CGTCAGCGTTTGGTATTCGGCGT
BS16953.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:41:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17660-PA | 1611 | CG17660-RA | 755..1611 | 873..17 | 4285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:36:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17660-RA | 2357 | CG17660-RA | 861..1717 | 873..17 | 4285 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:35:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1707772..1707999 | 17..244 | 1140 | 100 | Plus |
2L | 23513712 | 2L | 1708461..1708677 | 518..734 | 1085 | 100 | Plus |
2L | 23513712 | 2L | 1708061..1708214 | 244..397 | 770 | 100 | Plus |
2L | 23513712 | 2L | 1708821..1708959 | 735..873 | 695 | 100 | Plus |
2L | 23513712 | 2L | 1708281..1708404 | 397..520 | 620 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 05:35:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 557..596 | 279..240 | 110 | 75 | Minus |
BS16953.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:41:03 Download gff for
BS16953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17660-PA | 755..1611 | 17..873 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:44:29 Download gff for
BS16953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17660-RA | 861..1720 | 12..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:38:51 Download gff for
BS16953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17660-RA | 861..1720 | 12..873 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:38:51 Download gff for
BS16953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1708462..1708677 | 519..734 | 100 | <- | Plus |
2L | 1708821..1708959 | 735..873 | 100 | | Plus |
2L | 1707769..1707998 | 12..243 | 99 | <- | Plus |
2L | 1708061..1708214 | 244..397 | 100 | <- | Plus |
2L | 1708282..1708402 | 398..518 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:44:29 Download gff for
BS16953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1707769..1707998 | 12..243 | 99 | <- | Plus |
arm_2L | 1708061..1708214 | 244..397 | 100 | <- | Plus |
arm_2L | 1708282..1708402 | 398..518 | 100 | <- | Plus |
arm_2L | 1708462..1708677 | 519..734 | 100 | <- | Plus |
arm_2L | 1708821..1708959 | 735..873 | 100 | | Plus |
BS16953.5prime Sequence
931 bp (755 high quality bases) assembled on 2007-05-15
> BS16953.5prime
GAAGTTATCAGTCGACATGCAGGGATCGGCCACGCTGTTGGTGGTTGCGT
TGGCCTTGCTACTTGGCCCGGCGAGCACGGCCGGGAAATCGGATCCGGGC
ATGGTGGACGTGCTGGTGACCACGGACTTGCCCAGCATCCGGGAGCAGCG
TCCGCTGCTGGCCAACACAAAAATCTACGCGCAGATTAAGGGCTGCACTT
CCAATGTGGAATCGAACCTGACCATTACGTTCCGGCTGACGGAGCACCCC
TGCATCTTTGATGACCGCACGCTGCAGGCCATCGCCCAGAATGCTACCCT
GCAGAAGAACGCCACCATCAATAACGTCATCACCGAGATCACCAGGACAT
ATCCCTGCAACGGACTCATCGTCCTGGCGATAAACAAGGACAAGGTGGTC
GAAGGATCAGCGATCCCAACACCGGAGCCAAAGCATCCAATGCTGGAGCA
CAAGCACCCACTTTCGCCCACAACGAACCCAATTGCGAGCGTCAAGGAGG
ATGGCATTTACGAAATCGAAGTTAACATCGCGGCGGGCCCATCCGCGCAG
TTCAGTGCCGTGGTGCACATAGAGTTCCTGGGCCCACACGGCTTCATCTC
GGCCATAGATTGGCCATTCCTGCCGTTCTATCTGATCATGTGCATTGTTT
ACGTGATATTTGGAATTATTTGGCTGTTTGTTTCTTTCGCGCAATGGCGG
GATCTTTTGAGAATTCAATTCTGGATCGGTGGCGTCATACTGCTGGGAAT
GCTAGAGAAGGCCTTCTTCTACGCCGAATACCAAACGCTGACGAACAAGG
GTGTTGCAGTTCAGCACGCCGAACTGGTGGCCGAGTTTGTGTCCTGTGCG
AAGCGCACGCTGCCCAGGATGCTGGTCATCATCATGAGTCTCGGCTTTGG
CATTGTCAAACCCCGTTTGGGACCCATGCTG
BS16953.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:34:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17660-PA | 1611 | CG17660-RA | 1..915 | 17..931 | 4550 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:06:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17660-RA | 2357 | CG17660-RA | 102..1021 | 12..931 | 4570 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:06:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1708821..1709105 | 909..625 | 1410 | 99.6 | Minus |
2L | 23513712 | 2L | 1709617..1709812 | 466..271 | 980 | 100 | Minus |
2L | 23513712 | 2L | 1709174..1709333 | 625..466 | 800 | 100 | Minus |
2L | 23513712 | 2L | 1710207..1710320 | 125..12 | 555 | 99.1 | Minus |
2L | 23513712 | 2L | 1709878..1709963 | 271..186 | 430 | 100 | Minus |
2L | 23513712 | 2L | 1710038..1710104 | 190..124 | 320 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:06:34 has no hits.
BS16953.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:34:27 Download gff for
BS16953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17660-PA | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:49:10 Download gff for
BS16953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17660-RA | 102..1021 | 12..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:22 Download gff for
BS16953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17660-RA | 102..1021 | 12..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:22 Download gff for
BS16953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1708656..1708677 | 910..931 | 100 | <- | Minus |
2L | 1708821..1709104 | 626..909 | 99 | <- | Minus |
2L | 1709174..1709332 | 467..625 | 100 | <- | Minus |
2L | 1709617..1709811 | 272..466 | 100 | <- | Minus |
2L | 1709878..1709963 | 186..271 | 100 | <- | Minus |
2L | 1710043..1710103 | 125..185 | 100 | <- | Minus |
2L | 1710208..1710320 | 12..124 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:49:10 Download gff for
BS16953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1708656..1708677 | 910..931 | 100 | <- | Minus |
arm_2L | 1708821..1709104 | 626..909 | 99 | <- | Minus |
arm_2L | 1709174..1709332 | 467..625 | 100 | <- | Minus |
arm_2L | 1709617..1709811 | 272..466 | 100 | <- | Minus |
arm_2L | 1709878..1709963 | 186..271 | 100 | <- | Minus |
arm_2L | 1710043..1710103 | 125..185 | 100 | <- | Minus |
arm_2L | 1710208..1710320 | 12..124 | 99 | | Minus |
BS16953.complete Sequence
1643 bp assembled on 2007-05-07
GenBank Submission: FJ638215
> BS16953.complete
GAAGTTATCAGTCGACATGCAGGGATCGGCCACGCTGTTGGTGGTTGCGT
TGGCCTTGCTACTTGGCCCGGCGAGCACGGCCGGGAAATCGGATCCGGGC
ATGGTGGACGTGCTGGTGACCACGGACTTGCCCAGCATCCGGGAGCAGCG
TCCGCTGCTGGCCAACACAAAAATCTACGCGCAGATTAAGGGCTGCACTT
CCAATGTGGAATCGAACCTGACCATTACGTTCCGGCTGACGGAGCACCCC
TGCATCTTTGATGACCGCACGCTGCAGGCCATCGCCCAGAATGCTACCCT
GCAGAAGAACGCCACCATCAATAACGTCATCACCGAGATCACCAGGACAT
ATCCCTGCAACGGACTCATCGTCCTGGCGATAAACAAGGACAAGGTGGTC
GAAGGATCAGCGATCCCAACACCGGAGCCAAAGCATCCAATGCTGGAGCA
CAAGCACCCACTTTCGCCCACAACGAACCCAATTGCGAGCGTCAAGGAGG
ATGGCATTTACGAAATCGAAGTTAACATCGCGGCGGGCCCATCCGCGCAG
TTCAGTGCCGTGGTGCACATAGAGTTCCTGGGCCCACACGGCTTCATCTC
GGCCATAGATTGGCCATTCCTGCCGTTCTATCTGATCATGTGCATTGTTT
ACGTGATATTTGGAATTATTTGGCTGTTTGTTTCTTTCGCGCAATGGCGG
GATCTTTTGAGAATTCAATTCTGGATCGGTGGCGTCATACTGCTGGGAAT
GCTAGAGAAGGCCTTCTTCTACGCCGAATACCAAACGCTGACGAACAAGG
GTGTTGCAGTTCAGCACGCCGAACTGGTGGCCGAGTTTGTGTCCTGTGCG
AAGCGCACGCTGGCCAGGATGCTGGTCATCATCATGAGTCTCGGCTTTGG
CATTGTCAAACCCCGTTTGGGACCCATGCTGCATCGCGTGGTGGGCGTGG
GAACCCTCTACTTTGTGCTGGCCTGCGTGGAGAGCTACTTGCGTATCACC
AATGTGAAGACCGATCGCAGCGAGCTGCTGGTGGCGAGCATTCCACTGGC
GGTGCTGGACACAGGAATATGCTGGTGGATATTCACCTCGCTCGTGCAGA
CAACTCGCACTCTCCGACTGAGGAGGAATATGGTCAAGCTCTCACTGTAC
AGGCACTTCACCAACACGCTGATCTTCGCTGTTATCGCTTCCGTCATATT
CATGCTGTTTGCTTTGCGTTTGCGTAGGGTCGAGAATTGCACGCCTGGCT
GGCGCGACATTTGGGTGGATACTGGCTTTTGGCACATTTTGTTTTCGGTT
CTGCTGCTGGTGATTATGATTCTATGGCGACCGACGAATAACAACCAGCG
CTATGCCTTCACTCCGCTGCTGGATAACCCGGAAGACGAAGACGATGAGG
ACGAGGAGGATCAGTTCGTCGCGGATGCCTACGGCGTGAAAATGCGCGGC
CAGAATGGAACGCCGAAAACGTCGACGACTTCACGAAATGCCACGACCAC
CGAGGAAGACGACCTGCGCTGGGTGGAGGAGAACATACCGTCTTCGATGG
CGGACTCGGCGTTGCCCATCCTGGACTCCGATGAGGAAATCATCAACACC
AAGTTCGAGGTGTCGAAAATGCAATAAAAGCTTTCTAGACCAT
BS16953.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:37:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17660-RA | 1611 | CG17660-PA | 1..1611 | 17..1627 | 8055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:37:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17660-RA | 2357 | CG17660-RA | 102..1717 | 12..1627 | 8065 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:37:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1708821..1709105 | 909..625 | 1425 | 100 | Minus |
2L | 23513712 | 2L | 1707772..1707999 | 1627..1400 | 1140 | 100 | Minus |
2L | 23513712 | 2L | 1708461..1708677 | 1126..910 | 1085 | 100 | Minus |
2L | 23513712 | 2L | 1709617..1709812 | 466..271 | 980 | 100 | Minus |
2L | 23513712 | 2L | 1709174..1709333 | 625..466 | 800 | 100 | Minus |
2L | 23513712 | 2L | 1708061..1708214 | 1400..1247 | 770 | 100 | Minus |
2L | 23513712 | 2L | 1708281..1708404 | 1247..1124 | 620 | 100 | Minus |
2L | 23513712 | 2L | 1710207..1710320 | 125..12 | 555 | 99.1 | Minus |
2L | 23513712 | 2L | 1709878..1709963 | 271..186 | 430 | 100 | Minus |
2L | 23513712 | 2L | 1710038..1710104 | 190..124 | 320 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:37:52 has no hits.
BS16953.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:31 Download gff for
BS16953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17660-RA | 1..1611 | 17..1627 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:32 Download gff for
BS16953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17660-RA | 96..1714 | 12..1632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:27 Download gff for
BS16953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17660-RA | 107..1715 | 17..1625 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:32 Download gff for
BS16953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17660-RA | 96..1714 | 12..1632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:13 Download gff for
BS16953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17660-RA | 107..1715 | 17..1625 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:13 Download gff for
BS16953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1710043..1710103 | 125..185 | 100 | <- | Minus |
2L | 1710208..1710315 | 17..124 | 100 | | Minus |
2L | 1707774..1707998 | 1401..1625 | 100 | <- | Minus |
2L | 1708061..1708214 | 1247..1400 | 100 | <- | Minus |
2L | 1708282..1708402 | 1126..1246 | 100 | <- | Minus |
2L | 1708462..1708677 | 910..1125 | 100 | <- | Minus |
2L | 1708821..1709104 | 626..909 | 100 | <- | Minus |
2L | 1709174..1709332 | 467..625 | 100 | <- | Minus |
2L | 1709617..1709811 | 272..466 | 100 | <- | Minus |
2L | 1709878..1709963 | 186..271 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:27 Download gff for
BS16953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1709878..1709963 | 186..271 | 100 | <- | Minus |
arm_2L | 1710043..1710103 | 125..185 | 100 | <- | Minus |
arm_2L | 1710208..1710315 | 17..124 | 100 | | Minus |
arm_2L | 1707774..1707998 | 1401..1625 | 100 | <- | Minus |
arm_2L | 1708061..1708214 | 1247..1400 | 100 | <- | Minus |
arm_2L | 1708282..1708402 | 1126..1246 | 100 | <- | Minus |
arm_2L | 1708462..1708677 | 910..1125 | 100 | <- | Minus |
arm_2L | 1708821..1709104 | 626..909 | 100 | <- | Minus |
arm_2L | 1709174..1709332 | 467..625 | 100 | <- | Minus |
arm_2L | 1709617..1709811 | 272..466 | 100 | <- | Minus |
BS16953.pep Sequence
Translation from 16 to 1626
> BS16953.pep
MQGSATLLVVALALLLGPASTAGKSDPGMVDVLVTTDLPSIREQRPLLAN
TKIYAQIKGCTSNVESNLTITFRLTEHPCIFDDRTLQAIAQNATLQKNAT
INNVITEITRTYPCNGLIVLAINKDKVVEGSAIPTPEPKHPMLEHKHPLS
PTTNPIASVKEDGIYEIEVNIAAGPSAQFSAVVHIEFLGPHGFISAIDWP
FLPFYLIMCIVYVIFGIIWLFVSFAQWRDLLRIQFWIGGVILLGMLEKAF
FYAEYQTLTNKGVAVQHAELVAEFVSCAKRTLARMLVIIMSLGFGIVKPR
LGPMLHRVVGVGTLYFVLACVESYLRITNVKTDRSELLVASIPLAVLDTG
ICWWIFTSLVQTTRTLRLRRNMVKLSLYRHFTNTLIFAVIASVIFMLFAL
RLRRVENCTPGWRDIWVDTGFWHILFSVLLLVIMILWRPTNNNQRYAFTP
LLDNPEDEDDEDEEDQFVADAYGVKMRGQNGTPKTSTTSRNATTTEEDDL
RWVEENIPSSMADSALPILDSDEEIINTKFEVSKMQ*
BS16953.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17660-PA | 536 | CG17660-PA | 1..536 | 1..536 | 2771 | 100 | Plus |