Clone BS16953 Report

Search the DGRC for BS16953

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:169
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG17660-RA
Protein status:BS16953.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16953.3prime Sequence

873 bp (870 high quality bases) assembled on 2007-05-15

> BS16953.3prime
ATGGTCTAGAAAGCTTTTATTGCATTTTCGACACCTCGAACTTGGTGTTG
ATGATTTCCTCATCGGAGTCCAGGATGGGCAACGCCGAGTCCGCCATCGA
AGACGGTATGTTCTCCTCCACCCAGCGCAGGTCGTCTTCCTCGGTGGTCG
TGGCATTTCGTGAAGTCGTCGACGTTTTCGGCGTTCCATTCTGGCCGCGC
ATTTTCACGCCGTAGGCATCCGCGACGAACTGATCCTCCTCGTCCTCATC
GTCTTCGTCTTCCGGGTTATCCAGCAGCGGAGTGAAGGCATAGCGCTGGT
TGTTATTCGTCGGTCGCCATAGAATCATAATCACCAGCAGCAGAACCGAA
AACAAAATGTGCCAAAAGCCAGTATCCACCCAAATGTCGCGCCAGCCAGG
CGTGCAATTCTCGACCCTACGCAAACGCAAAGCAAACAGCATGAATATGA
CGGAAGCGATAACAGCGAAGATCAGCGTGTTGGTGAAGTGCCTGTACAGT
GAGAGCTTGACCATATTCCTCCTCAGTCGGAGAGTGCGAGTTGTCTGCAC
GAGCGAGGTGAATATCCACCAGCATATTCCTGTGTCCAGCACCGCCAGTG
GAATGCTCGCCACCAGCAGCTCGCTGCGATCGGTCTTCACATTGGTGATA
CGCAAGTAGCTCTCCACGCAGGCCAGCACAAAGTAGAGGGTTCCCACGCC
CACCACGCGATGCAGCATGGGTCCCAAACGGGGTTTGACAATGCCAAAGC
CGAGACTCATGATGATGACCAGCATCCTGGCCAGCGTGCGCTTCGCACAG
GACACAAACTCGGCCACCAGTTCGGCGTGCTGAACTGCAACACCCTTGTT
CGTCAGCGTTTGGTATTCGGCGT

BS16953.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG17660-PA 1611 CG17660-RA 755..1611 873..17 4285 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG17660-RA 2357 CG17660-RA 861..1717 873..17 4285 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1707772..1707999 17..244 1140 100 Plus
2L 23513712 2L 1708461..1708677 518..734 1085 100 Plus
2L 23513712 2L 1708061..1708214 244..397 770 100 Plus
2L 23513712 2L 1708821..1708959 735..873 695 100 Plus
2L 23513712 2L 1708281..1708404 397..520 620 100 Plus
Blast to na_te.dros performed 2015-02-12 05:35:59
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 557..596 279..240 110 75 Minus

BS16953.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:41:03 Download gff for BS16953.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17660-PA 755..1611 17..873 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:44:29 Download gff for BS16953.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 861..1720 12..873 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:38:51 Download gff for BS16953.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 861..1720 12..873 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:38:51 Download gff for BS16953.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1708462..1708677 519..734 100 <- Plus
2L 1708821..1708959 735..873 100   Plus
2L 1707769..1707998 12..243 99 <- Plus
2L 1708061..1708214 244..397 100 <- Plus
2L 1708282..1708402 398..518 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:44:29 Download gff for BS16953.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1707769..1707998 12..243 99 <- Plus
arm_2L 1708061..1708214 244..397 100 <- Plus
arm_2L 1708282..1708402 398..518 100 <- Plus
arm_2L 1708462..1708677 519..734 100 <- Plus
arm_2L 1708821..1708959 735..873 100   Plus

BS16953.5prime Sequence

931 bp (755 high quality bases) assembled on 2007-05-15

> BS16953.5prime
GAAGTTATCAGTCGACATGCAGGGATCGGCCACGCTGTTGGTGGTTGCGT
TGGCCTTGCTACTTGGCCCGGCGAGCACGGCCGGGAAATCGGATCCGGGC
ATGGTGGACGTGCTGGTGACCACGGACTTGCCCAGCATCCGGGAGCAGCG
TCCGCTGCTGGCCAACACAAAAATCTACGCGCAGATTAAGGGCTGCACTT
CCAATGTGGAATCGAACCTGACCATTACGTTCCGGCTGACGGAGCACCCC
TGCATCTTTGATGACCGCACGCTGCAGGCCATCGCCCAGAATGCTACCCT
GCAGAAGAACGCCACCATCAATAACGTCATCACCGAGATCACCAGGACAT
ATCCCTGCAACGGACTCATCGTCCTGGCGATAAACAAGGACAAGGTGGTC
GAAGGATCAGCGATCCCAACACCGGAGCCAAAGCATCCAATGCTGGAGCA
CAAGCACCCACTTTCGCCCACAACGAACCCAATTGCGAGCGTCAAGGAGG
ATGGCATTTACGAAATCGAAGTTAACATCGCGGCGGGCCCATCCGCGCAG
TTCAGTGCCGTGGTGCACATAGAGTTCCTGGGCCCACACGGCTTCATCTC
GGCCATAGATTGGCCATTCCTGCCGTTCTATCTGATCATGTGCATTGTTT
ACGTGATATTTGGAATTATTTGGCTGTTTGTTTCTTTCGCGCAATGGCGG
GATCTTTTGAGAATTCAATTCTGGATCGGTGGCGTCATACTGCTGGGAAT
GCTAGAGAAGGCCTTCTTCTACGCCGAATACCAAACGCTGACGAACAAGG
GTGTTGCAGTTCAGCACGCCGAACTGGTGGCCGAGTTTGTGTCCTGTGCG
AAGCGCACGCTGCCCAGGATGCTGGTCATCATCATGAGTCTCGGCTTTGG
CATTGTCAAACCCCGTTTGGGACCCATGCTG

BS16953.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG17660-PA 1611 CG17660-RA 1..915 17..931 4550 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG17660-RA 2357 CG17660-RA 102..1021 12..931 4570 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1708821..1709105 909..625 1410 99.6 Minus
2L 23513712 2L 1709617..1709812 466..271 980 100 Minus
2L 23513712 2L 1709174..1709333 625..466 800 100 Minus
2L 23513712 2L 1710207..1710320 125..12 555 99.1 Minus
2L 23513712 2L 1709878..1709963 271..186 430 100 Minus
2L 23513712 2L 1710038..1710104 190..124 320 98.5 Minus
Blast to na_te.dros performed on 2015-02-13 06:06:34 has no hits.

BS16953.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:34:27 Download gff for BS16953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17660-PA 1..915 17..931 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:49:10 Download gff for BS16953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 102..1021 12..931 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:22 Download gff for BS16953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 102..1021 12..931 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:22 Download gff for BS16953.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1708656..1708677 910..931 100 <- Minus
2L 1708821..1709104 626..909 99 <- Minus
2L 1709174..1709332 467..625 100 <- Minus
2L 1709617..1709811 272..466 100 <- Minus
2L 1709878..1709963 186..271 100 <- Minus
2L 1710043..1710103 125..185 100 <- Minus
2L 1710208..1710320 12..124 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:49:10 Download gff for BS16953.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1708656..1708677 910..931 100 <- Minus
arm_2L 1708821..1709104 626..909 99 <- Minus
arm_2L 1709174..1709332 467..625 100 <- Minus
arm_2L 1709617..1709811 272..466 100 <- Minus
arm_2L 1709878..1709963 186..271 100 <- Minus
arm_2L 1710043..1710103 125..185 100 <- Minus
arm_2L 1710208..1710320 12..124 99   Minus

BS16953.complete Sequence

1643 bp assembled on 2007-05-07

GenBank Submission: FJ638215

> BS16953.complete
GAAGTTATCAGTCGACATGCAGGGATCGGCCACGCTGTTGGTGGTTGCGT
TGGCCTTGCTACTTGGCCCGGCGAGCACGGCCGGGAAATCGGATCCGGGC
ATGGTGGACGTGCTGGTGACCACGGACTTGCCCAGCATCCGGGAGCAGCG
TCCGCTGCTGGCCAACACAAAAATCTACGCGCAGATTAAGGGCTGCACTT
CCAATGTGGAATCGAACCTGACCATTACGTTCCGGCTGACGGAGCACCCC
TGCATCTTTGATGACCGCACGCTGCAGGCCATCGCCCAGAATGCTACCCT
GCAGAAGAACGCCACCATCAATAACGTCATCACCGAGATCACCAGGACAT
ATCCCTGCAACGGACTCATCGTCCTGGCGATAAACAAGGACAAGGTGGTC
GAAGGATCAGCGATCCCAACACCGGAGCCAAAGCATCCAATGCTGGAGCA
CAAGCACCCACTTTCGCCCACAACGAACCCAATTGCGAGCGTCAAGGAGG
ATGGCATTTACGAAATCGAAGTTAACATCGCGGCGGGCCCATCCGCGCAG
TTCAGTGCCGTGGTGCACATAGAGTTCCTGGGCCCACACGGCTTCATCTC
GGCCATAGATTGGCCATTCCTGCCGTTCTATCTGATCATGTGCATTGTTT
ACGTGATATTTGGAATTATTTGGCTGTTTGTTTCTTTCGCGCAATGGCGG
GATCTTTTGAGAATTCAATTCTGGATCGGTGGCGTCATACTGCTGGGAAT
GCTAGAGAAGGCCTTCTTCTACGCCGAATACCAAACGCTGACGAACAAGG
GTGTTGCAGTTCAGCACGCCGAACTGGTGGCCGAGTTTGTGTCCTGTGCG
AAGCGCACGCTGGCCAGGATGCTGGTCATCATCATGAGTCTCGGCTTTGG
CATTGTCAAACCCCGTTTGGGACCCATGCTGCATCGCGTGGTGGGCGTGG
GAACCCTCTACTTTGTGCTGGCCTGCGTGGAGAGCTACTTGCGTATCACC
AATGTGAAGACCGATCGCAGCGAGCTGCTGGTGGCGAGCATTCCACTGGC
GGTGCTGGACACAGGAATATGCTGGTGGATATTCACCTCGCTCGTGCAGA
CAACTCGCACTCTCCGACTGAGGAGGAATATGGTCAAGCTCTCACTGTAC
AGGCACTTCACCAACACGCTGATCTTCGCTGTTATCGCTTCCGTCATATT
CATGCTGTTTGCTTTGCGTTTGCGTAGGGTCGAGAATTGCACGCCTGGCT
GGCGCGACATTTGGGTGGATACTGGCTTTTGGCACATTTTGTTTTCGGTT
CTGCTGCTGGTGATTATGATTCTATGGCGACCGACGAATAACAACCAGCG
CTATGCCTTCACTCCGCTGCTGGATAACCCGGAAGACGAAGACGATGAGG
ACGAGGAGGATCAGTTCGTCGCGGATGCCTACGGCGTGAAAATGCGCGGC
CAGAATGGAACGCCGAAAACGTCGACGACTTCACGAAATGCCACGACCAC
CGAGGAAGACGACCTGCGCTGGGTGGAGGAGAACATACCGTCTTCGATGG
CGGACTCGGCGTTGCCCATCCTGGACTCCGATGAGGAAATCATCAACACC
AAGTTCGAGGTGTCGAAAATGCAATAAAAGCTTTCTAGACCAT

BS16953.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG17660-RA 1611 CG17660-PA 1..1611 17..1627 8055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17660-RA 2357 CG17660-RA 102..1717 12..1627 8065 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1708821..1709105 909..625 1425 100 Minus
2L 23513712 2L 1707772..1707999 1627..1400 1140 100 Minus
2L 23513712 2L 1708461..1708677 1126..910 1085 100 Minus
2L 23513712 2L 1709617..1709812 466..271 980 100 Minus
2L 23513712 2L 1709174..1709333 625..466 800 100 Minus
2L 23513712 2L 1708061..1708214 1400..1247 770 100 Minus
2L 23513712 2L 1708281..1708404 1247..1124 620 100 Minus
2L 23513712 2L 1710207..1710320 125..12 555 99.1 Minus
2L 23513712 2L 1709878..1709963 271..186 430 100 Minus
2L 23513712 2L 1710038..1710104 190..124 320 98.5 Minus
Blast to na_te.dros performed on 2014-11-27 19:37:52 has no hits.

BS16953.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:31 Download gff for BS16953.complete
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 1..1611 17..1627 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:32 Download gff for BS16953.complete
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 96..1714 12..1632 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:27 Download gff for BS16953.complete
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 107..1715 17..1625 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:32 Download gff for BS16953.complete
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 96..1714 12..1632 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:13 Download gff for BS16953.complete
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 107..1715 17..1625 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:13 Download gff for BS16953.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1710043..1710103 125..185 100 <- Minus
2L 1710208..1710315 17..124 100   Minus
2L 1707774..1707998 1401..1625 100 <- Minus
2L 1708061..1708214 1247..1400 100 <- Minus
2L 1708282..1708402 1126..1246 100 <- Minus
2L 1708462..1708677 910..1125 100 <- Minus
2L 1708821..1709104 626..909 100 <- Minus
2L 1709174..1709332 467..625 100 <- Minus
2L 1709617..1709811 272..466 100 <- Minus
2L 1709878..1709963 186..271 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:27 Download gff for BS16953.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1709878..1709963 186..271 100 <- Minus
arm_2L 1710043..1710103 125..185 100 <- Minus
arm_2L 1710208..1710315 17..124 100   Minus
arm_2L 1707774..1707998 1401..1625 100 <- Minus
arm_2L 1708061..1708214 1247..1400 100 <- Minus
arm_2L 1708282..1708402 1126..1246 100 <- Minus
arm_2L 1708462..1708677 910..1125 100 <- Minus
arm_2L 1708821..1709104 626..909 100 <- Minus
arm_2L 1709174..1709332 467..625 100 <- Minus
arm_2L 1709617..1709811 272..466 100 <- Minus

BS16953.pep Sequence

Translation from 16 to 1626

> BS16953.pep
MQGSATLLVVALALLLGPASTAGKSDPGMVDVLVTTDLPSIREQRPLLAN
TKIYAQIKGCTSNVESNLTITFRLTEHPCIFDDRTLQAIAQNATLQKNAT
INNVITEITRTYPCNGLIVLAINKDKVVEGSAIPTPEPKHPMLEHKHPLS
PTTNPIASVKEDGIYEIEVNIAAGPSAQFSAVVHIEFLGPHGFISAIDWP
FLPFYLIMCIVYVIFGIIWLFVSFAQWRDLLRIQFWIGGVILLGMLEKAF
FYAEYQTLTNKGVAVQHAELVAEFVSCAKRTLARMLVIIMSLGFGIVKPR
LGPMLHRVVGVGTLYFVLACVESYLRITNVKTDRSELLVASIPLAVLDTG
ICWWIFTSLVQTTRTLRLRRNMVKLSLYRHFTNTLIFAVIASVIFMLFAL
RLRRVENCTPGWRDIWVDTGFWHILFSVLLLVIMILWRPTNNNQRYAFTP
LLDNPEDEDDEDEEDQFVADAYGVKMRGQNGTPKTSTTSRNATTTEEDDL
RWVEENIPSSMADSALPILDSDEEIINTKFEVSKMQ*

BS16953.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG17660-PA 536 CG17660-PA 1..536 1..536 2771 100 Plus