Clone BS16954 Report

Search the DGRC for BS16954

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:169
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG6614-RA
Protein status:BS16954.pep: full length peptide match
Sequenced Size:3209

Clone Sequence Records

BS16954.3prime Sequence

853 bp (796 high quality bases) assembled on 2007-05-15

> BS16954.3prime
ATGGTCTAGAAAGCTTTTACAAAGGAATAAAGTCCATTTTCGTCATCTTT
TCGGCTGGATTTCCATCATCATCAACAAGGAGATGTACATCCGAGTACTG
GATCTTATCAAGTTCGGCATAAACGCTTTTGCTGATGCTTACTTCGGGGT
ACAGTTTAGCCACCTTCCAACATTCCAAGGCCGTCTTATTTCGGCTCAGT
CGTAGGTTAATGGTAGCTAAATATCCCCAGACATCTGGTATAAAGATGTC
GACTTCTGTGCAACGCGATAGATACGGAATGGCTTCCTCAAGACGATTGA
GATGGTACAGTGTCAGGCCCATTCCATAGTTGGCTATAAAGTTCTTGCGT
CTGGCAGGCAAACAGATATTAAATGCTTTTTCGGCCAGTTCATATTGTTT
TCTTTGTAAGGCTAATTGACCGAGACGCAGGAAACTCAACTTGAATAGCA
AGTTATCCATCGGATCTACTACAGACAATAGTTCCTGAAAGTATTTGAGA
GCTTCATCACAGCGCCCACGGGAATACTCTACACTGCCGTTTATGTGAAG
TTGGTAACAGCGCTTCAACTTTCCATACACACTGTTATCCGTAGGCATCT
TTATGATCTGGAACTTATCATCGATCTGGCGCTGCAGTATCTTCAAAGTG
GTTCTAATAAGATAGACCTCAGCTTCCGTAAAACACTGTTCAATTTCGGA
AAATATGACTTCAGCAAATGCGTATGCTCCTAGGCGGGCAAAGAGTTTAA
AAACAGGATAAAACTGAGTATTCATCGGGGTTGAAGAGCTCTTCATTTCA
AAGTCGACCGGCAAGTAAGTTCATAAAGGGAAGTAGGAGTATAGTTTAGA
GCC

BS16954.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6614-PA 3177 CG6614-RA 2376..3177 818..17 4010 100 Minus
CG6614-PA 3177 CG6614-RA 2340..2376 853..817 185 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6614-RC 3825 CG6614-RC 2400..3237 853..17 4165 99.9 Minus
CG6614-RB 3830 CG6614-RB 2405..3242 853..17 4165 99.9 Minus
CG6614-RA 3305 CG6614-RA 2400..3237 853..17 4165 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11645920..11646211 563..853 1410 99.7 Plus
2L 23513712 2L 11645601..11645863 302..564 1315 100 Plus
2L 23513712 2L 11645396..11645545 152..301 750 100 Plus
2L 23513712 2L 11645207..11645342 17..152 680 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:36:07 has no hits.

BS16954.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:41:12 Download gff for BS16954.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6614-PA 2340..3177 17..853 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:44:31 Download gff for BS16954.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6614-RA 2400..3240 10..853 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:39:16 Download gff for BS16954.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6614-RA 2400..3240 10..853 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:39:16 Download gff for BS16954.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 11645204..11645341 10..151 97 <- Plus
2L 11645396..11645545 152..301 100 <- Plus
2L 11645601..11645861 302..562 100 <- Plus
2L 11645920..11646211 563..853 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:44:31 Download gff for BS16954.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11645204..11645341 10..151 97 <- Plus
arm_2L 11645396..11645545 152..301 100 <- Plus
arm_2L 11645601..11645861 302..562 100 <- Plus
arm_2L 11645920..11646211 563..853 99   Plus

BS16954.5prime Sequence

914 bp (843 high quality bases) assembled on 2007-05-15

> BS16954.5prime
GAAGTTATCAGTCGACATGGATAGAAAGATCCGAAACACCCTCCGTCGAA
CTGCTCGGCTCACAAAACGGAGGCGCTCAGCAGGAGGTAACGAGATTAGC
AGGAACAAGGCTGTCGAGCAGCGAACGGTGGAGATTCCTTTGGACCAGAG
GCAGGCCCCACAGCAACGGGTCTTCCTCTACATCCAGCTGAACGAAATGA
GCAAGCTACCCGAAACGGGGAATCCTCTGGAGCTGCACCTCTACCATCCG
AAGAACACACTGCAGAAGATGCAGGAGCGCTACACGACAGATACCATAAT
CTATCAGCATGAGTTCAATCTGAAGAAGCCCGTATTTGCAATGGGTGTGA
TGCAGGACGATATCGAGGACATGAACACGTTTAGCGATCAGCCGCTGTTG
ATATCCCTCTATCAAAGGATTCCCAGGCGCCGCAAGGGAGGATCTGGGAA
AGGGAAGTCAAGGAAGCATGGACGCACATCCTCTTCGCGTGAAATAAATC
AATTAATCACAGATGCCTTGGAGAGTAAAGAAAATGTTCTAAAGGAGAGA
TCAAGTAAGTGGTCATCCGAACGTGATGGTGAGGAAGGTGGAGAGGAAGG
TGAGGGAGGTACCTTTTCGGAGGAGCGACTGGAACTCCTATCCCGTGGCC
ACTGCGATCTTCTACAGCTTTTCCAAAGACGTCGCTTTATCAGCGACATC
ACCATCTATCTGTACCCGGAGTATCGTTCGAAAAAGATAAATGATAAAAT
GACAACGTGCAGCGTTTGGCACATGTATTCCATTCTGCCCATCCTGAAGA
ACTTTAACTTTACGAACTTGGCCTTTCTGACCCTGGAATCGATATANCAT
GTTCCCGAGGATCTCCACTCANNATCCGCTGAACTGGGCCTCAGTGGTTC
TTTTTCGTCACGCA

BS16954.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG6614-PA 3177 CG6614-RA 1..888 17..904 4333 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6614-RC 3825 CG6614-RC 61..948 17..904 4377 99.4 Plus
CG6614-RB 3830 CG6614-RB 61..948 17..904 4377 99.4 Plus
CG6614-RA 3305 CG6614-RA 61..948 17..904 4377 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11647892..11648779 904..17 4377 99.4 Minus
Blast to na_te.dros performed on 2015-02-13 00:06:47 has no hits.

BS16954.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:34:36 Download gff for BS16954.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6614-PA 1..898 17..913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:53:19 Download gff for BS16954.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6614-RA 49..958 5..913 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:39:08 Download gff for BS16954.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6614-RA 49..958 5..913 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:39:08 Download gff for BS16954.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11647882..11648791 5..913 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:53:19 Download gff for BS16954.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11647882..11648791 5..913 98   Minus

BS16954.complete Sequence

3209 bp assembled on 2010-05-12

GenBank Submission: KX803322

> BS16954.complete
GAAGTTATCAGTCGACATGGATAGAAAGATCCGAAACACCCTCCGTCGAA
CTGCTCGGCTCACAAAACGGAGGCGCTCAGCAGGAGGTAACGAGATTAGC
AGGAACAAGGCTGTCGAGCAGCGAACGGTGGAGATTCCTTTGGACCAGAG
GCAGGCCCCACAGCAACGGGTCTTCCTCTACATCCAGCTGAACGAAATGA
GCAAGCTACCCGAAACGGGGAATCCTCTGGAGCTGCACCTCTACCATCCG
AAGAACACACTGCAGAAGATGCAGGAGCGCTACACGACAGATACCATAAT
CTATCAGCATGAGTTCAATCTGAAGAAGCCCGTATTTGCAATGGGTGTGA
TGCAGGACGATATCGAGGACATGAACACGTTTAGCGATCAGCCGCTGTTG
ATATCCCTCTATCAAAGGATTCCCAGGCGCCGCAAGGGAGGATCTGGGAA
AGGGAAGTCAAGGAAGCATGGACGCACATCCTCTTCGCGTGAAATAAATC
AATTAATCACAGATGCCTTGGAGAGTAAAGAAAATGTTCTAAAGGAGAGA
TCAAGTAAGTGGTCATCCGAACGTGATGGTGAGGAAGGTGGAGAGGAAGG
TGAGGGAGGTACCTTTTCGGAGGAGCGACTGGAACTCCTATCCCGTGGCC
ACTGCGATCTTCTACAGCTTTTCCAAAGACGTCGCTTTATCAGCGACATC
ACCATCTATCTGTACCCGGAGTATCGTTCGAAAAAGATAAATGATAAAAT
GACAACGTGCAGCGTTTGGCACATGTATTCCATTCTGCCCATCCTGAAGA
ACTTTAACTTTACGAACTTGGCCTTTCTGACCCTGGAATCGATATACAAT
GTTCCCGAGGATCTCCACTCAAAATCCGCTGAACTGGGCCTCAGTGTTTC
TTTTCGTTCAACGCAGCCTGAGGAGTCGGATGGTGCCTTTAGGGTGGTTC
CCTTGTGCACGTACTCAGGATTCATTTCACAGATCATCAGTGACCAGAAC
ACGATCATCGTGTGGGAGAACATCAAGCGGGATCTGCACCTCAACATGAA
CTTCAGTTTTAACCAAATGGAGACCAATTCGAGGGTGAAGCTTCCAAAGC
TTTTTCGCATGCTACTTTGGGAACAGGACGTTGACTTTCAGATCCATAAA
ATTGATCCTGTTTCGGACCTTGCCTTGATCAACAACTCTCTGCACCGTTT
CGTTCTCAACGAGCAAATGAGGAAAATCCTCGAGGAGGCTGTAGTTCACA
ATGACTATGAATTGTTGCTGCAACTGTACCAGGAGACACCGACCAATGTC
CTGTACGAAGGAGTCATTAATCCAAGTATCTTTGGTTACCCAGGAGTGAA
TTATTGCCGCTTCGCATGTAGGCTTAATCCCGTTTTCGAGCCATCCATCA
AGCTAAGCCTTCCCAGGGATACCTTGGTAATGGGCCCAATGTTCTGCACC
TTCAAGATTTGCTTCTTTCAGCCCATTTGCGAGCGCAATGAACCCCTGGA
CCAATACAATGAGAGCCTCCTCAAAAGGGCAAAGCTGCGACGCTGCTTCG
ACATGGAGTTCCTCAAAGAGGACGAGACGGATGGTGATGTGCTACTCGAG
CTCTACCGAGCCTTTGATGATCTTATAACCGATACAATCGAGTTCATAAT
CAAGCGAGATGTGCAAGACATCAATGATAGAAAGGAGTTCTTTTGCTGCC
AGCTGGGGAACATCTGTAATCTGGTGCTGAAAATATGCGGCTGCGACTTT
AACGTACGAATGCCAACAAAAACGAACATTGAATTCAGAGAAATGCTGAC
GCACATGTATAAGGAACTGATGGATCGCATTGAGGGTGTATTTACCGCCT
GCTGTTGGAAAAATAATTGTGTCACAACGTCGAATCAGGATCAAGAGGAA
CATGGCTTGAATCGGATGATGAATGAAATGCGACTGGTCAGCAACACTGG
TCAACGAGACTTGGCCATTCACATGTACGATGAGATTGACCACAGCACCA
CCAACCGCATTGTATTCGACTTTGTAACCCTGCTGAATAGTGTCGAAAAC
CTGCAGTTTGAACAAGCGGCGAGATACTTCACGAAACCCCGAACAACCGA
TTGGAGTGGATATTACTTTACTCTGATCTTACAGCTCTATATTAACTATA
TGATGGATCTAAGATCAACCGACGAAGAGGTCGTAAGTACGGTCAAATCT
AATATGATCGAGAGTCTGCGTCAGTTTGCGAATAAGAACAGTCTGGAATC
GGAAATCTGGATCCTTTTGTACTGCTATTACAAGGAACATAGTTATTTAC
CCGGAATGGAGTTGACGCGCTGGAAATTTCAGAATCTAACGAAAATTACA
CCCAAGGCTCTAAACTATACTCCTACTTCCCTTTATGAACTTTACTTGCC
GGTCGACTTTGAAATGAAGAGCTCTTCAACCCCGATGAATACTCAGTTTT
ATCCTGTTTTTAAACTCTTTGCCCGCCTAGGAGCATACGCATTTGCTGAA
GTCATATTTTCCGAAATTGAACAGTGTTTTACGGAAGCTGAGGTCTATCT
TATTAGAACCACTTTGAAGATACTGCAGCGCCAGATCGATGATAAGTTCC
AGATCATAAAGATGCCTACGGATAACAGTGTGTATGGAAAGTTGAAGCGC
TGTTACCAACTTCACATAAACGGCAGTGTAGAGTATTCCCGTGGGCGCTG
TGATGAAGCTCTCAAATACTTTCAGGAACTATTGTCTGTAGTAGATCCGA
TGGATAACTTGCTATTCAAGTTGAGTTTCCTGCGTCTCGGTCAATTAGCC
TTACAAAGAAAACAATATGAACTGGCCGAAAAAGCATTTAATATCTGTTT
GCCTGCCAGACGCAAGAACTTTATAGCCAACTATGGAATGGGCCTGACAC
TGTACCATCTCAATCGTCTTGAGGAAGCCATTCCGTATCTATCGCGTTGC
ACAGAAGTCGACATCTTTATACCAGATGTCTGGGGATATTTAGCTACCAT
TAACCTACGACTGAGCCGAAATAAGACGGCCTTGGAATGTTGGAAGGTGG
CTAAACTGTACCCCGAAGTAAGCATCAGCAAAAGCGTTTATGCCGAACTT
GATAAGATCCAGTACTCGGATGTACATCTCCTTGTTGATGATGATGGAAA
TCCAGCCGAAAAGATGACGAAAATGGACTTTATTCCTTTGTAAAAGCTTT
CTAGACCAT

BS16954.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG6614-RC 3177 CG6614-PC 1..3177 17..3193 15885 100 Plus
CG6614-RA 3177 CG6614-PA 1..3177 17..3193 15885 100 Plus
CG6614-RB 2115 CG6614-PB 1..2105 17..2121 10525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6614-RC 3825 CG6614-RC 61..3237 17..3193 15885 100 Plus
CG6614-RA 3305 CG6614-RA 61..3237 17..3193 15885 100 Plus
CG6614-RB 3830 CG6614-RB 61..3242 17..3193 15800 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11647450..11648779 1346..17 6650 100 Minus
2L 23513712 2L 11645920..11646445 2647..2122 2630 100 Minus
2L 23513712 2L 11646946..11647391 1790..1345 2230 100 Minus
2L 23513712 2L 11646558..11646889 2121..1790 1660 100 Minus
2L 23513712 2L 11645601..11645863 2908..2646 1315 100 Minus
2L 23513712 2L 11645396..11645545 3058..2909 750 100 Minus
2L 23513712 2L 11645207..11645342 3193..3058 680 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:05:45 has no hits.

BS16954.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-12 12:12:09 Download gff for BS16954.complete
Subject Subject Range Query Range Percent Splice Strand
CG6614-RA 61..3235 17..3191 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:41 Download gff for BS16954.complete
Subject Subject Range Query Range Percent Splice Strand
CG6614-RA 61..3235 17..3191 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:37 Download gff for BS16954.complete
Subject Subject Range Query Range Percent Splice Strand
CG6614-RA 61..3235 17..3191 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:37 Download gff for BS16954.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11645209..11645341 3059..3191 100 <- Minus
2L 11645396..11645545 2909..3058 100 <- Minus
2L 11645601..11645861 2648..2908 100 <- Minus
2L 11645920..11646445 2122..2647 100 <- Minus
2L 11646558..11646889 1790..2121 100 <- Minus
2L 11646947..11647389 1347..1789 100 <- Minus
2L 11647450..11648779 17..1346 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:41 Download gff for BS16954.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11645209..11645341 3059..3191 100 <- Minus
arm_2L 11645396..11645545 2909..3058 100 <- Minus
arm_2L 11645601..11645861 2648..2908 100 <- Minus
arm_2L 11645920..11646445 2122..2647 100 <- Minus
arm_2L 11646558..11646889 1790..2121 100 <- Minus
arm_2L 11646947..11647389 1347..1789 100 <- Minus
arm_2L 11647450..11648779 17..1346 100   Minus

BS16954.pep Sequence

Translation from 16 to 3192

> BS16954.pep
MDRKIRNTLRRTARLTKRRRSAGGNEISRNKAVEQRTVEIPLDQRQAPQQ
RVFLYIQLNEMSKLPETGNPLELHLYHPKNTLQKMQERYTTDTIIYQHEF
NLKKPVFAMGVMQDDIEDMNTFSDQPLLISLYQRIPRRRKGGSGKGKSRK
HGRTSSSREINQLITDALESKENVLKERSSKWSSERDGEEGGEEGEGGTF
SEERLELLSRGHCDLLQLFQRRRFISDITIYLYPEYRSKKINDKMTTCSV
WHMYSILPILKNFNFTNLAFLTLESIYNVPEDLHSKSAELGLSVSFRSTQ
PEESDGAFRVVPLCTYSGFISQIISDQNTIIVWENIKRDLHLNMNFSFNQ
METNSRVKLPKLFRMLLWEQDVDFQIHKIDPVSDLALINNSLHRFVLNEQ
MRKILEEAVVHNDYELLLQLYQETPTNVLYEGVINPSIFGYPGVNYCRFA
CRLNPVFEPSIKLSLPRDTLVMGPMFCTFKICFFQPICERNEPLDQYNES
LLKRAKLRRCFDMEFLKEDETDGDVLLELYRAFDDLITDTIEFIIKRDVQ
DINDRKEFFCCQLGNICNLVLKICGCDFNVRMPTKTNIEFREMLTHMYKE
LMDRIEGVFTACCWKNNCVTTSNQDQEEHGLNRMMNEMRLVSNTGQRDLA
IHMYDEIDHSTTNRIVFDFVTLLNSVENLQFEQAARYFTKPRTTDWSGYY
FTLILQLYINYMMDLRSTDEEVVSTVKSNMIESLRQFANKNSLESEIWIL
LYCYYKEHSYLPGMELTRWKFQNLTKITPKALNYTPTSLYELYLPVDFEM
KSSSTPMNTQFYPVFKLFARLGAYAFAEVIFSEIEQCFTEAEVYLIRTTL
KILQRQIDDKFQIIKMPTDNSVYGKLKRCYQLHINGSVEYSRGRCDEALK
YFQELLSVVDPMDNLLFKLSFLRLGQLALQRKQYELAEKAFNICLPARRK
NFIANYGMGLTLYHLNRLEEAIPYLSRCTEVDIFIPDVWGYLATINLRLS
RNKTALECWKVAKLYPEVSISKSVYAELDKIQYSDVHLLVDDDGNPAEKM
TKMDFIPL*

BS16954.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:27:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6614-PC 1058 CG6614-PC 1..1058 1..1058 5549 100 Plus
CG6614-PA 1058 CG6614-PA 1..1058 1..1058 5549 100 Plus
CG6614-PB 704 CG6614-PB 1..704 1..704 3701 99.7 Plus
CG14339-PA 1017 CG14339-PA 18..1000 42..1041 1199 30.4 Plus