Clone Sequence Records
BS16955.3prime Sequence
552 bp (552 high quality bases) assembled on 2007-05-15
> BS16955.3prime
ATGGTCTAGAAAGCTTTCACGTTTGGTGGTCGTAGTTGTTGCCAAAATAG
ATGGCTTTATTACTGGGCAACTCGGGCTTGGGTCGATTGAGTTCCACGTA
GAGCACAATCAATCCGGTGGCCAGGACCAACAGGATCAGCGTGATCAGCA
GGATGGTGTTCCGAGTGACCCGCCTAGATGGCGACTTATCACGACTTCGA
TTGGCGTTGCCATTACCATTGGCATTGTTGCTGTTGATTCCTGCAGCCGT
TTGCATGGCGTGTGCCTCCATATAATCCATATAGTATATGGATACCGGTC
CCTGGTATTGGGTCATGGGACCGATTACCACGTCGGTGGAGTGGTTGAGA
TTTATAACGCTGGACGGCTGGATAGCTGGATTTGTGAAGATATTCTGCGG
TAACGGAAGGCCGGAGGATGAGGTCGATGAGCCGGCGGACGTGAGATTGT
GCAACCTTTGGGCGGGACTCGCTCTTTGACGACCCTGAAGTGTCCACAGC
GAATTATCGGTTGTGGGGCTATTGTTTTCCTCGAACATGTCGACTGATAA
CT
BS16955.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32042-PD | 520 | PGRP-LA-RD | 1..520 | 538..19 | 2600 | 100 | Minus |
CG32042-PE | 1107 | PGRP-LA-RE | 1..520 | 538..19 | 2600 | 100 | Minus |
CG32042-PF | 900 | PGRP-LA-RF | 92..313 | 240..19 | 1110 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:34:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LA-RD | 1286 | CG32042-RD | 125..648 | 538..15 | 2620 | 100 | Minus |
PGRP-LA-RE | 1698 | CG32042-RE | 125..644 | 538..19 | 2600 | 100 | Minus |
PGRP-LA-RC | 1593 | CG32042-RC | 330..555 | 240..15 | 1130 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:34:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9334630..9334928 | 538..240 | 1495 | 100 | Minus |
3L | 28110227 | 3L | 9336710..9336938 | 242..14 | 1130 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:34:21 has no hits.
BS16955.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:28 Download gff for
BS16955.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32042-PE | 1..520 | 19..538 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:44:03 Download gff for
BS16955.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RD | 118..657 | 8..548 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:34:52 Download gff for
BS16955.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RD | 118..657 | 8..548 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:34:52 Download gff for
BS16955.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9334623..9334927 | 241..548 | 98 | -> | Minus |
3L | 9336712..9336938 | 14..240 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:44:03 Download gff for
BS16955.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9327723..9328027 | 241..548 | 98 | -> | Minus |
arm_3L | 9329812..9330038 | 14..240 | 99 | | Minus |
BS16955.5prime Sequence
552 bp (552 high quality bases) assembled on 2007-05-15
> BS16955.5prime
GAAGTTATCAGTCGACATGTTCGAGGAAAACAATAGCCCCACAACCGATA
ATTCGCTGTGGACACTTCAGGGTCGTCAAAGAGCGAGTCCCGCCCAAAGG
TTGCACAATCTCACGTCCGCCGGCTCATCGACCTCATCCTCCGGCCTTCC
GTTACCGCAGAATATCTTCACAAATCCAGCTATCCAGCCGTCCAGCGTTA
TAAATCTCAACCACTCCACCGACGTGGTAATCGGTCCCATGACCCAATAC
CAGGGACCGGTATCCATATACTATATGGATTATATGGAGGCACACGCCAT
GCAAACGGCTGCAGGAATCAACAGCAACAATGCCAATGGTAATGGCAACG
CCAATCGAAGTCGTGATAAGTCGCCATCTAGGCGGGTCACTCGGAACACC
ATCCTGCTGATCACGCTGATCCTGTTGGTCCTGGCCACCGGATTGATTGT
GCTCTACGTGGAACTCAATCGACCCAAGCCCGAGTTGCCCAGTAATAAAG
CCATCTATTTTGGCAACAACTACGACCACCAAACGTGAAAGCTTTCTAGA
CC
BS16955.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32042-PD | 520 | PGRP-LA-RD | 1..520 | 17..536 | 2600 | 100 | Plus |
CG32042-PE | 1107 | PGRP-LA-RE | 1..520 | 17..536 | 2600 | 100 | Plus |
CG32042-PF | 900 | PGRP-LA-RF | 92..313 | 315..536 | 1110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:29:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LA-RD | 1286 | CG32042-RD | 125..648 | 17..540 | 2620 | 100 | Plus |
PGRP-LA-RE | 1698 | CG32042-RE | 125..644 | 17..536 | 2600 | 100 | Plus |
PGRP-LA-RC | 1593 | CG32042-RC | 330..555 | 315..540 | 1130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:29:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9334630..9334928 | 17..315 | 1495 | 100 | Plus |
3L | 28110227 | 3L | 9336710..9336938 | 313..541 | 1130 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:29:57 has no hits.
BS16955.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:24 Download gff for
BS16955.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32042-PE | 1..520 | 17..536 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:42:50 Download gff for
BS16955.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RD | 118..657 | 7..547 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:34:06 Download gff for
BS16955.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RD | 118..657 | 7..547 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:34:06 Download gff for
BS16955.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9334623..9334927 | 7..314 | 98 | -> | Plus |
3L | 9336712..9336938 | 315..541 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:42:50 Download gff for
BS16955.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9327723..9328027 | 7..314 | 98 | -> | Plus |
arm_3L | 9329812..9330038 | 315..541 | 99 | | Plus |
BS16955.complete Sequence
554 bp assembled on 2007-05-07
GenBank Submission: FJ638216
> BS16955.complete
GAAGTTATCAGTCGACATGTTCGAGGAAAACAATAGCCCCACAACCGATA
ATTCGCTGTGGACACTTCAGGGTCGTCAAAGAGCGAGTCCCGCCCAAAGG
TTGCACAATCTCACGTCCGCCGGCTCATCGACCTCATCCTCCGGCCTTCC
GTTACCGCAGAATATCTTCACAAATCCAGCTATCCAGCCGTCCAGCGTTA
TAAATCTCAACCACTCCACCGACGTGGTAATCGGTCCCATGACCCAATAC
CAGGGACCGGTATCCATATACTATATGGATTATATGGAGGCACACGCCAT
GCAAACGGCTGCAGGAATCAACAGCAACAATGCCAATGGTAATGGCAACG
CCAATCGAAGTCGTGATAAGTCGCCATCTAGGCGGGTCACTCGGAACACC
ATCCTGCTGATCACGCTGATCCTGTTGGTCCTGGCCACCGGATTGATTGT
GCTCTACGTGGAACTCAATCGACCCAAGCCCGAGTTGCCCAGTAATAAAG
CCATCTATTTTGGCAACAACTACGACCACCAAACGTGAAAGCTTTCTAGA
CCAT
BS16955.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:05:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LA-RD | 522 | CG32042-PD | 1..522 | 17..538 | 2610 | 100 | Plus |
PGRP-LA-RE | 1107 | CG32042-PE | 1..520 | 17..536 | 2600 | 100 | Plus |
PGRP-LA-RF | 900 | CG32042-PF | 92..313 | 315..536 | 1110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LA-RD | 1286 | CG32042-RD | 125..648 | 17..540 | 2620 | 100 | Plus |
PGRP-LA-RE | 1698 | CG32042-RE | 125..644 | 17..536 | 2600 | 100 | Plus |
PGRP-LA-RC | 1593 | CG32042-RC | 330..555 | 315..540 | 1130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9334630..9334928 | 17..315 | 1495 | 100 | Plus |
3L | 28110227 | 3L | 9336710..9336938 | 313..541 | 1130 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:05:13 has no hits.
BS16955.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:33 Download gff for
BS16955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RE | 1..520 | 17..536 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:34 Download gff for
BS16955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RD | 118..657 | 7..547 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:13 Download gff for
BS16955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RD | 130..645 | 22..537 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:33 Download gff for
BS16955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RD | 118..657 | 7..547 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:58 Download gff for
BS16955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RD | 130..645 | 22..537 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:58 Download gff for
BS16955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9334635..9334927 | 22..314 | 100 | -> | Plus |
3L | 9336712..9336934 | 315..537 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:13 Download gff for
BS16955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9327735..9328027 | 22..314 | 100 | -> | Plus |
arm_3L | 9329812..9330034 | 315..537 | 100 | | Plus |
BS16955.pep Sequence
Translation from 16 to 537
> BS16955.pep
MFEENNSPTTDNSLWTLQGRQRASPAQRLHNLTSAGSSTSSSGLPLPQNI
FTNPAIQPSSVINLNHSTDVVIGPMTQYQGPVSIYYMDYMEAHAMQTAAG
INSNNANGNGNANRSRDKSPSRRVTRNTILLITLILLVLATGLIVLYVEL
NRPKPELPSNKAIYFGNNYDHQT*
BS16955.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LA-PD | 173 | CG32042-PD | 1..173 | 1..173 | 893 | 100 | Plus |
PGRP-LA-PE | 368 | CG32042-PE | 1..173 | 1..173 | 893 | 100 | Plus |
PGRP-LA-PF | 299 | CG32042-PF | 24..104 | 92..173 | 373 | 91.5 | Plus |