Clone BS16955 Report

Search the DGRC for BS16955

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:169
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptPGRP-LA-RD
Protein status:BS16955.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16955.3prime Sequence

552 bp (552 high quality bases) assembled on 2007-05-15

> BS16955.3prime
ATGGTCTAGAAAGCTTTCACGTTTGGTGGTCGTAGTTGTTGCCAAAATAG
ATGGCTTTATTACTGGGCAACTCGGGCTTGGGTCGATTGAGTTCCACGTA
GAGCACAATCAATCCGGTGGCCAGGACCAACAGGATCAGCGTGATCAGCA
GGATGGTGTTCCGAGTGACCCGCCTAGATGGCGACTTATCACGACTTCGA
TTGGCGTTGCCATTACCATTGGCATTGTTGCTGTTGATTCCTGCAGCCGT
TTGCATGGCGTGTGCCTCCATATAATCCATATAGTATATGGATACCGGTC
CCTGGTATTGGGTCATGGGACCGATTACCACGTCGGTGGAGTGGTTGAGA
TTTATAACGCTGGACGGCTGGATAGCTGGATTTGTGAAGATATTCTGCGG
TAACGGAAGGCCGGAGGATGAGGTCGATGAGCCGGCGGACGTGAGATTGT
GCAACCTTTGGGCGGGACTCGCTCTTTGACGACCCTGAAGTGTCCACAGC
GAATTATCGGTTGTGGGGCTATTGTTTTCCTCGAACATGTCGACTGATAA
CT

BS16955.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG32042-PD 520 PGRP-LA-RD 1..520 538..19 2600 100 Minus
CG32042-PE 1107 PGRP-LA-RE 1..520 538..19 2600 100 Minus
CG32042-PF 900 PGRP-LA-RF 92..313 240..19 1110 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LA-RD 1286 CG32042-RD 125..648 538..15 2620 100 Minus
PGRP-LA-RE 1698 CG32042-RE 125..644 538..19 2600 100 Minus
PGRP-LA-RC 1593 CG32042-RC 330..555 240..15 1130 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9334630..9334928 538..240 1495 100 Minus
3L 28110227 3L 9336710..9336938 242..14 1130 99.6 Minus
Blast to na_te.dros performed on 2015-02-12 05:34:21 has no hits.

BS16955.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:28 Download gff for BS16955.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32042-PE 1..520 19..538 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:44:03 Download gff for BS16955.3prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RD 118..657 8..548 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:34:52 Download gff for BS16955.3prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RD 118..657 8..548 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:34:52 Download gff for BS16955.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9334623..9334927 241..548 98 -> Minus
3L 9336712..9336938 14..240 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:44:03 Download gff for BS16955.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9327723..9328027 241..548 98 -> Minus
arm_3L 9329812..9330038 14..240 99   Minus

BS16955.5prime Sequence

552 bp (552 high quality bases) assembled on 2007-05-15

> BS16955.5prime
GAAGTTATCAGTCGACATGTTCGAGGAAAACAATAGCCCCACAACCGATA
ATTCGCTGTGGACACTTCAGGGTCGTCAAAGAGCGAGTCCCGCCCAAAGG
TTGCACAATCTCACGTCCGCCGGCTCATCGACCTCATCCTCCGGCCTTCC
GTTACCGCAGAATATCTTCACAAATCCAGCTATCCAGCCGTCCAGCGTTA
TAAATCTCAACCACTCCACCGACGTGGTAATCGGTCCCATGACCCAATAC
CAGGGACCGGTATCCATATACTATATGGATTATATGGAGGCACACGCCAT
GCAAACGGCTGCAGGAATCAACAGCAACAATGCCAATGGTAATGGCAACG
CCAATCGAAGTCGTGATAAGTCGCCATCTAGGCGGGTCACTCGGAACACC
ATCCTGCTGATCACGCTGATCCTGTTGGTCCTGGCCACCGGATTGATTGT
GCTCTACGTGGAACTCAATCGACCCAAGCCCGAGTTGCCCAGTAATAAAG
CCATCTATTTTGGCAACAACTACGACCACCAAACGTGAAAGCTTTCTAGA
CC

BS16955.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG32042-PD 520 PGRP-LA-RD 1..520 17..536 2600 100 Plus
CG32042-PE 1107 PGRP-LA-RE 1..520 17..536 2600 100 Plus
CG32042-PF 900 PGRP-LA-RF 92..313 315..536 1110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LA-RD 1286 CG32042-RD 125..648 17..540 2620 100 Plus
PGRP-LA-RE 1698 CG32042-RE 125..644 17..536 2600 100 Plus
PGRP-LA-RC 1593 CG32042-RC 330..555 315..540 1130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9334630..9334928 17..315 1495 100 Plus
3L 28110227 3L 9336710..9336938 313..541 1130 99.6 Plus
Blast to na_te.dros performed on 2015-02-12 05:29:57 has no hits.

BS16955.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:24 Download gff for BS16955.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32042-PE 1..520 17..536 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:42:50 Download gff for BS16955.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RD 118..657 7..547 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:34:06 Download gff for BS16955.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RD 118..657 7..547 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:34:06 Download gff for BS16955.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9334623..9334927 7..314 98 -> Plus
3L 9336712..9336938 315..541 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:42:50 Download gff for BS16955.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9327723..9328027 7..314 98 -> Plus
arm_3L 9329812..9330038 315..541 99   Plus

BS16955.complete Sequence

554 bp assembled on 2007-05-07

GenBank Submission: FJ638216

> BS16955.complete
GAAGTTATCAGTCGACATGTTCGAGGAAAACAATAGCCCCACAACCGATA
ATTCGCTGTGGACACTTCAGGGTCGTCAAAGAGCGAGTCCCGCCCAAAGG
TTGCACAATCTCACGTCCGCCGGCTCATCGACCTCATCCTCCGGCCTTCC
GTTACCGCAGAATATCTTCACAAATCCAGCTATCCAGCCGTCCAGCGTTA
TAAATCTCAACCACTCCACCGACGTGGTAATCGGTCCCATGACCCAATAC
CAGGGACCGGTATCCATATACTATATGGATTATATGGAGGCACACGCCAT
GCAAACGGCTGCAGGAATCAACAGCAACAATGCCAATGGTAATGGCAACG
CCAATCGAAGTCGTGATAAGTCGCCATCTAGGCGGGTCACTCGGAACACC
ATCCTGCTGATCACGCTGATCCTGTTGGTCCTGGCCACCGGATTGATTGT
GCTCTACGTGGAACTCAATCGACCCAAGCCCGAGTTGCCCAGTAATAAAG
CCATCTATTTTGGCAACAACTACGACCACCAAACGTGAAAGCTTTCTAGA
CCAT

BS16955.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LA-RD 522 CG32042-PD 1..522 17..538 2610 100 Plus
PGRP-LA-RE 1107 CG32042-PE 1..520 17..536 2600 100 Plus
PGRP-LA-RF 900 CG32042-PF 92..313 315..536 1110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LA-RD 1286 CG32042-RD 125..648 17..540 2620 100 Plus
PGRP-LA-RE 1698 CG32042-RE 125..644 17..536 2600 100 Plus
PGRP-LA-RC 1593 CG32042-RC 330..555 315..540 1130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9334630..9334928 17..315 1495 100 Plus
3L 28110227 3L 9336710..9336938 313..541 1130 99.6 Plus
Blast to na_te.dros performed on 2014-11-27 14:05:13 has no hits.

BS16955.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:33 Download gff for BS16955.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RE 1..520 17..536 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:34 Download gff for BS16955.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RD 118..657 7..547 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:13 Download gff for BS16955.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RD 130..645 22..537 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:33 Download gff for BS16955.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RD 118..657 7..547 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:58 Download gff for BS16955.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RD 130..645 22..537 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:58 Download gff for BS16955.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9334635..9334927 22..314 100 -> Plus
3L 9336712..9336934 315..537 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:13 Download gff for BS16955.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9327735..9328027 22..314 100 -> Plus
arm_3L 9329812..9330034 315..537 100   Plus

BS16955.pep Sequence

Translation from 16 to 537

> BS16955.pep
MFEENNSPTTDNSLWTLQGRQRASPAQRLHNLTSAGSSTSSSGLPLPQNI
FTNPAIQPSSVINLNHSTDVVIGPMTQYQGPVSIYYMDYMEAHAMQTAAG
INSNNANGNGNANRSRDKSPSRRVTRNTILLITLILLVLATGLIVLYVEL
NRPKPELPSNKAIYFGNNYDHQT*

BS16955.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:20
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LA-PD 173 CG32042-PD 1..173 1..173 893 100 Plus
PGRP-LA-PE 368 CG32042-PE 1..173 1..173 893 100 Plus
PGRP-LA-PF 299 CG32042-PF 24..104 92..173 373 91.5 Plus