Clone Sequence Records
BS16956.3prime Sequence
885 bp (809 high quality bases) assembled on 2007-05-15
> BS16956.3prime
ATGGTCTAGAAAGCTTCTAATCGTCGCTTAGAAAATCGTCATCGAGGTTC
ACATCTGTCGTATCAATGTTATCATCCAACGTAATTCCATCTATTTCCAA
GTCCAGGTCGTCGTCGTCATCCGCAGCGGATGTAGGCTCGGCCACCTGGC
TGCTAGAAACAACAGCTTGAGCGGGAACGTAAGCTGGCTTCACCTTCTCC
TCCAAATGCTGGCCGGCGGCACCCTGCTCGGCGGCAAATAGTTCTTGCAG
AGGATGACGTTCGCTATTCAGTGGTAGATTCGCAGCGAGGCGTGCCGGCG
CCTTACGAGCTCGCTCCTCCTGCAAATGCTGCTCCACCCGCAGCGCATCG
CCCAGGCCAGGGAAGAGATTTGTATACTGTGCCGGATCGGCCAGCGACTG
TCCCGCCTTTTCGTTGACCTTTCCAAGCTTCTCCCGCCAAAGCTCTACGA
TCCTTGACATCTGGCTGGGCAGGTAGGTGCGGGCAAAGAACGCTGCCTCT
GGCAACCGATTTGTCTCAATGAGAATCTCCAAGCAGCGTTCCACGTCTGA
ACGAAGGAACGCCGAGAGGAAAGCTAGATTGTGATGTCCCTGGGCCGAGC
CAGCCGCACCCACCACCTCGAGCAGCTGGGCATCGCCGGAAGCTGTTGAG
AGCAGCAATAGACCGCTTAAGTCGTTTGCCTTCTGCATGCACTCTTTAAC
CAGAGACATGTTGTTCTTGCTAGACGCCACATCTGCCAGCTGTGACCACT
TCTGGGAGTTCTCCGACTCACGGGCCAGCTTTAAGGCGATTTCCAAATCT
CCGATCTGTAAGGCCAAGTCAAACTTATGGTCGGCATCGGTAGAGACTTG
CANGGCCTGCGACTTAAAGCCCTGTTTCTCCAGAA
BS16956.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6699-PA | 2745 | beta'Cop-RA | 1877..2745 | 885..17 | 4326 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:33:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beta'COP-RA | 3066 | CG6699-RA | 1997..2865 | 885..17 | 4334 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:33:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13381313..13382181 | 885..17 | 4334 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:33:52 has no hits.
BS16956.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:38 Download gff for
BS16956.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6699-PA | 1879..2745 | 17..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:50:45 Download gff for
BS16956.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta'Cop-RA | 1997..2865 | 17..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:52:02 Download gff for
BS16956.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta'COP-RA | 1997..2865 | 17..885 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:52:02 Download gff for
BS16956.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13381313..13382181 | 17..885 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:50:45 Download gff for
BS16956.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13381313..13382181 | 17..885 | 99 | | Minus |
BS16956.5prime Sequence
915 bp (813 high quality bases) assembled on 2007-05-15
> BS16956.5prime
GAAGTTATCAGTCGACATGCCTCTCAAACTAGACATCAAGCGTCGCCTGA
CGTCGCGCTCGGATCGGGTCAAGTGCGTCGATCTCCATCCGGCGGAGCCG
TGGATGTTGTGCGCCCTATACAATGGCCACGTACACATCATGAACTATGA
GAACCAGCAAATGGTTAAGGACTTCGAGGTCTGCGACGTGCCTGTGCGCT
CCGCCCGTTTCGTGGCACGCAAGAACTGGATCCTCACCGGCTCAGATGAC
ATGCAGATCCGTGTGTTCAACTACAACACCCTGGAGAAGGTGCACTCGTT
CGAGGCGCACTCGGACTATCTGCGCTGCATCGCGGTGCATCCCACACAGC
CGCTGGTGCTGACCAGCAGTGATGACATGCTCATCAAGCTTTGGAATTGG
GAGAAGATGTGGGCCTGCCAGCGTGTCTTCGAGGGCCACACCCACTACGT
CATGCAGATCGTGTTTAACCCGAAGGACAACAACACCTTTGCCTCCGCCT
CGCTGGATCGCACTGTCAAGGTGTGGCAGTTGGGCTCTAATTTCGCCAAC
TTTACGCTGGAAGGACATGAGAAGGGTGTAAATTGTGTGGATTATTACCA
TGGTGGCGATAAGCCATACTTGATTTCCGGTGCTGACGATCGTTTGGTCA
AAATCTGGGATTACCAAAACAAAACCTGTGTGCAGACTTTAGAGGGGCAT
GCTCAGAATATCTCCGCAGTCTGCTTCCACCCGGAATTGCCGATCGTGTT
GACTGGCTCAGAAGATGGCACCGTCCGCATTTGGCACTCTGGCACTTATC
GCCTCGAGACCTGCCTNCACTACGGCTTCGAGCGGGTGTGGACCATCTCC
AGCATGCGCGGCACCAACAACGTGGCTCTGGGCTACGATGAGGGGTTCAT
CATCATAAAGTGGGG
BS16956.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6699-PA | 2745 | beta'Cop-RA | 1..890 | 17..906 | 4356 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:05:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beta'COP-RA | 3066 | CG6699-RA | 121..1014 | 17..910 | 4399 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:05:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13379494..13380033 | 371..910 | 2629 | 99.1 | Plus |
| 2L | 23513712 | 2L | 13379022..13379376 | 17..371 | 1775 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:05:41 has no hits.
BS16956.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:34 Download gff for
BS16956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6699-PA | 1..898 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:27:52 Download gff for
BS16956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta'Cop-RA | 114..1018 | 11..915 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:37:13 Download gff for
BS16956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta'COP-RA | 114..1018 | 11..915 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:37:13 Download gff for
BS16956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13379015..13379376 | 11..371 | 99 | -> | Plus |
| 2L | 13379495..13380037 | 372..915 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:27:52 Download gff for
BS16956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13379015..13379376 | 11..371 | 99 | -> | Plus |
| arm_2L | 13379495..13380037 | 372..915 | 98 | | Plus |
BS16956.complete Sequence
2777 bp assembled on 2010-05-12
GenBank Submission: KX803151
> BS16956.complete
GAAGTTATCAGTCGACATGCCTCTCAAACTAGACATCAAGCGTCGCCTGA
CGTCGCGCTCGGATCGGGTCAAGTGCGTCGATCTCCATCCGGCGGAGCCG
TGGATGTTGTGCGCCCTATACAATGGCCACGTACACATCATGAACTATGA
GAACCAGCAAATGGTTAAGGACTTCGAGGTCTGCGACGTGCCTGTGCGCT
CCGCCCGTTTCGTGGCACGCAAGAACTGGATCCTCACCGGCTCAGATGAC
ATGCAGATCCGTGTGTTCAACTACAACACCCTGGAGAAGGTGCACTCGTT
CGAGGCGCACTCGGACTATCTGCGCTGCATCGCGGTGCATCCCACACAGC
CGCTGGTGCTGACCAGCAGTGATGACATGCTCATCAAGCTTTGGAATTGG
GAGAAGATGTGGGCCTGCCAGCGTGTCTTCGAGGGCCACACCCACTACGT
CATGCAGATCGTGTTTAACCCGAAGGACAACAACACCTTTGCCTCCGCCT
CGCTGGATCGCACTGTCAAGGTGTGGCAGTTGGGCTCTAATTTCGCCAAC
TTTACGCTGGAAGGACATGAGAAGGGTGTAAATTGTGTGGATTATTACCA
TGGTGGCGATAAGCCATACTTGATTTCCGGTGCTGACGATCGTTTGGTCA
AAATCTGGGATTACCAAAACAAAACCTGTGTGCAGACTTTAGAGGGGCAT
GCTCAGAATATCTCCGCAGTCTGCTTCCACCCGGAATTGCCGATCGTGTT
GACTGGCTCAGAAGATGGCACCGTCCGCATTTGGCACTCTGGCACTTATC
GCCTCGAGACCTGCCTCAACTACGGCTTCGAGCGGGTGTGGACCATCTCC
AGCATGCGCGGCACCAACAACGTGGCTCTGGGCTACGATGAGGGTTCCAT
CATCATTAAGGTGGGCCGCGAGGAGCCAGCAATGTCTATGGACGTTGTGG
GAAGCAAGATCATTTGGGCCAAGCACTCCGAAATGCAGCAGGTCAATCTA
AAGACTATTGCTGATGGCACAGAGATCAAGGATGGCGAACGCTTGCCCGT
TGCCACCAAGGATATGGGCGCCTGCGAGATTTACCCGCAGACCATTGCTC
ACAATCCCAACGGTCGTTTCGTCGTTGTATGCGGCGATGGCGAGTACATC
ATCTACACATCGATGGCCCTGAGAAATAAGGCTTTCGGTTCCGCGCAAGA
ATTTGTGTGGGCCCTCGAGAGCAACGAGTACGCCATCAGGGAGAACAACG
GCACCGTTCGACTCTTTCGCAACTTCAAGGAGCGCAAGAGTTTTACTCCA
GAGTACGGAGCCGAGAGCATATACGGTGGCTACTATTTCGGTGTAAAAAC
CTCATCCGGATTGGCCTTCTATGACTGGGAGACGTTGCAACTGGTGAGGC
GCATCGAGGTGCAGCCAAAGAATGTGTTTTGGAACGAAAGTGGCAGTCTG
GTCTGCTTGGCCACAGATGACTCCTACTTTGTCCTGGGGGTGGACACTGC
CCAGGTTGCCAATGCCGTAGAGACCAAGGAGGGACTGGAGGATGATGGTG
TGGAGAGCGCTTTCAATGTGCTGGGCGAGGTTTCGGAGTGCGTCAAAACA
GGACTTTGGGTGGGAGACTGCTTCATCTATACCAACTCGGTGAACCGCAT
CAACTACTACGTGGGCGGCGAGATTGTGACAGTATCCCACTTAGACCGCA
CAATGTATCTGCTGGGCTACGTGCCCAAGGACAATCGTATTTACCTCGGC
GATAAGGAGTTGAACGTGATCAGTTTCTGTCTGCAGCTGTCCGTGCTGGA
GTACCAGACGGCGGTTATGCGAAGAGACTTTGAGCGCGCAGACGTTGTGC
TACCGACCATTCCCAAGGAGCACCGCACTAGGGTGGCACATTTTCTGGAG
AAACAGGGCTTTAAGTCGCAGGCCCTGCAAGTCTCTACCGATGCCGACCA
TAAGTTTGACTTGGCCTTACAGATCGGAGATTTGGAAATCGCCTTAAAGC
TGGCCCGTGAGTCGGAGAACTCCCAGAAGTGGTCACAGCTGGCAGATGTG
GCGTCTAGCAAGAACAACATGTCTCTGGTTAAAGAGTGCATGCAGAAGGC
AAACGACTTAAGCGGTCTATTGCTGCTCTCAACAGCTTCCGGCGATGCCC
AGCTGCTCGAGGTGGTGGGTGCGGCTGGCTCGGCCCAGGGACATCACAAT
CTAGCTTTCCTCTCGGCGTTCCTTCGTTCAGACGTGGAACGCTGCTTGGA
GATTCTCATTGAGACAAATCGGTTGCCAGAGGCAGCGTTCTTTGCCCGCA
CCTACCTGCCCAGCCAGATGTCAAGGATCGTAGAGCTTTGGCGGGAGAAG
CTTGGAAAGGTCAACGAAAAGGCGGGACAGTCGCTGGCCGATCCGGCACA
GTATACAAATCTCTTCCCTGGCCTGGGCGATGCGCTGCGGGTGGAGCAGC
ATTTGCAGGAGGAGCGAGCTCGTAAGGCGCCGGCACGCCTCGCTGCGAAT
CTACCACTGAATAGCGAACGTCATCCTCTGCAAGAACTATTTGCCGCCGA
GCAGGGTGCCGCCGGCCAGCATTTGGAGGAGAAGGTGAAGCCAGCTTACG
TTCCCGCTCAAGCTGTTGTTTCTAGCAGCCAGGTGGCCGAGCCTACATCC
GCTGCGGATGACGACGACGACCTGGACTTGGAAATAGATGGAATTACGTT
GGATGATAACATTGATACGACAGATGTGAACCTCGATGACGATTTTCTAA
GCGACGATTAGAAGCTTTCTAGACCAT
BS16956.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:04:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beta'COP-RA | 2745 | CG6699-PA | 1..2745 | 17..2761 | 13725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:04:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beta'COP-RA | 3066 | CG6699-RA | 121..2865 | 17..2761 | 13725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:04:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13380994..13382181 | 1574..2761 | 5940 | 100 | Plus |
| 2L | 23513712 | 2L | 13379494..13380116 | 371..993 | 3115 | 100 | Plus |
| 2L | 23513712 | 2L | 13380175..13380760 | 990..1575 | 2930 | 100 | Plus |
| 2L | 23513712 | 2L | 13379022..13379376 | 17..371 | 1775 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:04:54 has no hits.
BS16956.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-12 12:11:59 Download gff for
BS16956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta'Cop-RA | 126..2870 | 17..2761 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:16 Download gff for
BS16956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta'Cop-RA | 121..2865 | 17..2761 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:16 Download gff for
BS16956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta'COP-RA | 121..2865 | 17..2761 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:16 Download gff for
BS16956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13379022..13379376 | 17..371 | 100 | -> | Plus |
| 2L | 13379495..13380114 | 372..991 | 100 | -> | Plus |
| 2L | 13380177..13380759 | 992..1574 | 100 | -> | Plus |
| 2L | 13380995..13382181 | 1575..2761 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:16 Download gff for
BS16956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13379022..13379376 | 17..371 | 100 | -> | Plus |
| arm_2L | 13379495..13380114 | 372..991 | 100 | -> | Plus |
| arm_2L | 13380177..13380759 | 992..1574 | 100 | -> | Plus |
| arm_2L | 13380995..13382181 | 1575..2761 | 100 | | Plus |
BS16956.pep Sequence
Translation from 16 to 2760
> BS16956.pep
MPLKLDIKRRLTSRSDRVKCVDLHPAEPWMLCALYNGHVHIMNYENQQMV
KDFEVCDVPVRSARFVARKNWILTGSDDMQIRVFNYNTLEKVHSFEAHSD
YLRCIAVHPTQPLVLTSSDDMLIKLWNWEKMWACQRVFEGHTHYVMQIVF
NPKDNNTFASASLDRTVKVWQLGSNFANFTLEGHEKGVNCVDYYHGGDKP
YLISGADDRLVKIWDYQNKTCVQTLEGHAQNISAVCFHPELPIVLTGSED
GTVRIWHSGTYRLETCLNYGFERVWTISSMRGTNNVALGYDEGSIIIKVG
REEPAMSMDVVGSKIIWAKHSEMQQVNLKTIADGTEIKDGERLPVATKDM
GACEIYPQTIAHNPNGRFVVVCGDGEYIIYTSMALRNKAFGSAQEFVWAL
ESNEYAIRENNGTVRLFRNFKERKSFTPEYGAESIYGGYYFGVKTSSGLA
FYDWETLQLVRRIEVQPKNVFWNESGSLVCLATDDSYFVLGVDTAQVANA
VETKEGLEDDGVESAFNVLGEVSECVKTGLWVGDCFIYTNSVNRINYYVG
GEIVTVSHLDRTMYLLGYVPKDNRIYLGDKELNVISFCLQLSVLEYQTAV
MRRDFERADVVLPTIPKEHRTRVAHFLEKQGFKSQALQVSTDADHKFDLA
LQIGDLEIALKLARESENSQKWSQLADVASSKNNMSLVKECMQKANDLSG
LLLLSTASGDAQLLEVVGAAGSAQGHHNLAFLSAFLRSDVERCLEILIET
NRLPEAAFFARTYLPSQMSRIVELWREKLGKVNEKAGQSLADPAQYTNLF
PGLGDALRVEQHLQEERARKAPARLAANLPLNSERHPLQELFAAEQGAAG
QHLEEKVKPAYVPAQAVVSSSQVAEPTSAADDDDDLDLEIDGITLDDNID
TTDVNLDDDFLSDD*
BS16956.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:26:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beta'COP-PA | 914 | CG6699-PA | 1..914 | 1..914 | 4792 | 100 | Plus |
| alphaCOP-PA | 1234 | CG7961-PA | 7..786 | 13..792 | 669 | 25.9 | Plus |
| alphaCOP-PB | 1234 | CG7961-PB | 7..786 | 13..792 | 669 | 25.9 | Plus |
| Lis-1-PG | 411 | CG8440-PG | 181..408 | 45..256 | 284 | 28.1 | Plus |
| Lis-1-PF | 411 | CG8440-PF | 181..408 | 45..256 | 284 | 28.1 | Plus |
| Lis-1-PG | 411 | CG8440-PG | 123..324 | 72..256 | 246 | 26.3 | Plus |
| Lis-1-PG | 411 | CG8440-PG | 103..262 | 94..256 | 225 | 30.5 | Plus |
| Lis-1-PG | 411 | CG8440-PG | 106..371 | 140..388 | 173 | 25.5 | Plus |
| Lis-1-PG | 411 | CG8440-PG | 196..409 | 18..215 | 163 | 25.2 | Plus |
