Clone BS16957 Report

Search the DGRC for BS16957

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:169
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptCG1468-RA
Protein status:BS16957.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16957.3prime Sequence

532 bp (454 high quality bases) assembled on 2007-05-15

> BS16957.3prime
ATGGTCTAGAAAGCTTCTAATTCCAGTTGCCGTCATCATTAGCCCCAATT
GAGTGGATTTGGCTATCGTAAGTGCCATAGGGGTCAACCTCCTGATACTC
CTGATCTCCTTGATCATCTAGATCCTCCTGATCCTCAGAGTCCTCTTCAT
TGTCGCCGAACAATTCGATATTATCATCTGTATCTGGTGCTTCTGTCGGT
TCAGTTGTAGGTTCAGTTGTGGGTTCAGTTGTGGGTTCAGTTGTGGGTTC
AGTTGTGGGTTCAGTTGTGGGTTCTGTTGTGGGTTCAGTTGTGGTGGTGG
TGGTGGTTCTGCTAGTGGTTGTGGTGGGGTTGGTGGTTGTGGTTGGACTG
ATAGGAGCCACGGGTTTCTTCACTACATCTCCACACTCCGGATTGCTTGG
ATCGAAGTCACAGCGAATTTTCCAGTTTAATTCGTCATCATCGAGCTGGA
CAACCAACTTCTTGGGCCGCTTTCGGTAGTATACGTCCGTGACCTCGATG
ATCTCGAGATCAGGATCGTTCCGTGATATCCG

BS16957.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG1468-PA 621 CG1468-RA 119..621 519..17 2440 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG1468-RA 735 CG1468-RA 131..644 529..16 2480 98.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9878820..9879188 384..16 1830 99.7 Minus
X 23542271 X 9878552..9878698 529..383 660 96.6 Minus
Blast to na_te.dros performed on 2015-02-12 05:34:36 has no hits.

BS16957.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:49 Download gff for BS16957.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1468-PA 106..621 17..532 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:44:08 Download gff for BS16957.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1468-RA 128..644 16..532 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:35:25 Download gff for BS16957.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1468-RA 128..644 16..532 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:35:25 Download gff for BS16957.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9878549..9878696 385..532 95 -> Minus
X 9878820..9879188 16..384 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:44:08 Download gff for BS16957.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9772582..9772729 385..532 95 -> Minus
arm_X 9772853..9773221 16..384 99   Minus

BS16957.5prime Sequence

651 bp (651 high quality bases) assembled on 2007-05-15

> BS16957.5prime
GAAGTTATCAGTCGACATGAGCAGATCCCTGTTTCTAATTCTTTTATTGG
GAATCTCCTGCCTGGAGATTTTCCAGGCTCGCTCTCTTCTGGAGGGGAGA
AAACAAAGATTTGTGCGCAGACGCATATCACCCGACGATCCTGATCTCGA
GATCATCGAGGTCAAGGACGTCTACTACCGAAAGCGGCCCAAGAAGTTGG
TTGTCCAGCTCGATGATGACGAATTAAACTGGAAAATTCGCTGTGACTTC
GATCCAAGCAATCCGGAGTGTGGAGATGTAGTGAAGAAACCCGTGGCTCC
TATCAGGCCAACCACAACCACCAACCCCACCACAACCACTAGCAGAACCA
CCACCACCACCACAACTGAACCCACAACAGAACCCACAACTGAACCCACA
ACTGAACCCACAACTGAACCCACAACTGAACCCACAACTGAACCTACAAC
TGAACCGACAGAAGCACCAGATACAGATGATAATATCGAATTGTTCGGCG
ACAATGAAGAGGACTCTGAGGATCAGGAGGATCTAGATGATCAAGGAGAT
CAGGAGTATCAGGAGGTTGACCCCTATGGCACTTACGATAGCCAAATCCA
CTCAATTGGGGCTAATGATGACGGCAACTGGAATTAGAAGCTTTCTAGAC
C

BS16957.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1468-PA 621 CG1468-RA 1..621 17..637 3105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG1468-RA 735 CG1468-RA 23..644 17..638 3110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9878820..9879188 270..638 1845 100 Plus
X 23542271 X 9878444..9878698 17..271 1275 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:54:27 has no hits.

BS16957.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:43 Download gff for BS16957.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1468-PA 1..621 17..637 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:23:42 Download gff for BS16957.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1468-RA 19..644 13..638 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:15:12 Download gff for BS16957.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1468-RA 19..644 13..638 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:15:12 Download gff for BS16957.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9878440..9878696 13..269 99 -> Plus
X 9878820..9879188 270..638 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:23:42 Download gff for BS16957.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9772473..9772729 13..269 99 -> Plus
arm_X 9772853..9773221 270..638 100   Plus

BS16957.complete Sequence

653 bp assembled on 2007-05-07

GenBank Submission: FJ638217

> BS16957.complete
GAAGTTATCAGTCGACATGAGCAGATCCCTGTTTCTAATTCTTTTATTGG
GAATCTCCTGCCTGGAGATTTTCCAGGCTCGCTCTCTTCTGGAGGGGAGA
AAACAAAGATTTGTGCGCAGACGCATATCACCCGACGATCCTGATCTCGA
GATCATCGAGGTCAAGGACGTCTACTACCGAAAGCGGCCCAAGAAGTTGG
TTGTCCAGCTCGATGATGACGAATTAAACTGGAAAATTCGCTGTGACTTC
GATCCAAGCAATCCGGAGTGTGGAGATGTAGTGAAGAAACCCGTGGCTCC
TATCAGGCCAACCACAACCACCAACCCCACCACAACCACTAGCAGAACCA
CCACCACCACCACAACTGAACCCACAACAGAACCCACAACTGAACCCACA
ACTGAACCCACAACTGAACCCACAACTGAACCCACAACTGAACCTACAAC
TGAACCGACAGAAGCACCAGATACAGATGATAATATCGAATTGTTCGGCG
ACAATGAAGAGGACTCTGAGGATCAGGAGGATCTAGATGATCAAGGAGAT
CAGGAGTATCAGGAGGTTGACCCCTATGGCACTTACGATAGCCAAATCCA
CTCAATTGGGGCTAATGATGACGGCAACTGGAATTAGAAGCTTTCTAGAC
CAT

BS16957.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG1468-RA 621 CG1468-PA 1..621 17..637 3105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1468-RA 735 CG1468-RA 23..644 17..638 3110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9878820..9879188 270..638 1845 100 Plus
X 23542271 X 9878444..9878698 17..271 1275 100 Plus
Blast to na_te.dros performed on 2014-11-27 17:02:30 has no hits.

BS16957.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:26 Download gff for BS16957.complete
Subject Subject Range Query Range Percent Splice Strand
CG1468-RA 1..621 17..637 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:06 Download gff for BS16957.complete
Subject Subject Range Query Range Percent Splice Strand
CG1468-RA 19..644 13..638 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:30 Download gff for BS16957.complete
Subject Subject Range Query Range Percent Splice Strand
CG1468-RA 23..643 17..637 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:26 Download gff for BS16957.complete
Subject Subject Range Query Range Percent Splice Strand
CG1468-RA 19..644 13..638 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:05 Download gff for BS16957.complete
Subject Subject Range Query Range Percent Splice Strand
CG1468-RA 23..643 17..637 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:05 Download gff for BS16957.complete
Subject Subject Range Query Range Percent Splice Strand
X 9878444..9878696 17..269 100 -> Plus
X 9878820..9879187 270..637 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:30 Download gff for BS16957.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9772477..9772729 17..269 100 -> Plus
arm_X 9772853..9773220 270..637 100   Plus

BS16957.pep Sequence

Translation from 16 to 636

> BS16957.pep
MSRSLFLILLLGISCLEIFQARSLLEGRKQRFVRRRISPDDPDLEIIEVK
DVYYRKRPKKLVVQLDDDELNWKIRCDFDPSNPECGDVVKKPVAPIRPTT
TTNPTTTTSRTTTTTTTEPTTEPTTEPTTEPTTEPTTEPTTEPTTEPTEA
PDTDDNIELFGDNEEDSEDQEDLDDQGDQEYQEVDPYGTYDSQIHSIGAN
DDGNWN*

BS16957.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1468-PA 206 CG1468-PA 1..206 1..206 1102 100 Plus
Mur11Da-PD 626 CG32644-PD 299..390 79..159 158 51.1 Plus
CG43710-PA 340 CG43710-PA 107..179 80..151 157 47.9 Plus
CG14420-PA 293 CG14420-PA 62..148 99..180 154 42.5 Plus
CG43710-PA 340 CG43710-PA 116..193 81..158 151 43.6 Plus
CG43710-PA 340 CG43710-PA 101..175 78..151 150 45.3 Plus
CG14420-PA 293 CG14420-PA 49..142 89..185 147 37.1 Plus
CG14419-PA 195 CG14419-PA 16..91 85..153 147 42.1 Plus