Clone Sequence Records
BS16957.3prime Sequence
532 bp (454 high quality bases) assembled on 2007-05-15
> BS16957.3prime
ATGGTCTAGAAAGCTTCTAATTCCAGTTGCCGTCATCATTAGCCCCAATT
GAGTGGATTTGGCTATCGTAAGTGCCATAGGGGTCAACCTCCTGATACTC
CTGATCTCCTTGATCATCTAGATCCTCCTGATCCTCAGAGTCCTCTTCAT
TGTCGCCGAACAATTCGATATTATCATCTGTATCTGGTGCTTCTGTCGGT
TCAGTTGTAGGTTCAGTTGTGGGTTCAGTTGTGGGTTCAGTTGTGGGTTC
AGTTGTGGGTTCAGTTGTGGGTTCTGTTGTGGGTTCAGTTGTGGTGGTGG
TGGTGGTTCTGCTAGTGGTTGTGGTGGGGTTGGTGGTTGTGGTTGGACTG
ATAGGAGCCACGGGTTTCTTCACTACATCTCCACACTCCGGATTGCTTGG
ATCGAAGTCACAGCGAATTTTCCAGTTTAATTCGTCATCATCGAGCTGGA
CAACCAACTTCTTGGGCCGCTTTCGGTAGTATACGTCCGTGACCTCGATG
ATCTCGAGATCAGGATCGTTCCGTGATATCCG
BS16957.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1468-PA | 621 | CG1468-RA | 119..621 | 519..17 | 2440 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:34:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1468-RA | 735 | CG1468-RA | 131..644 | 529..16 | 2480 | 98.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:34:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9878820..9879188 | 384..16 | 1830 | 99.7 | Minus |
X | 23542271 | X | 9878552..9878698 | 529..383 | 660 | 96.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:34:36 has no hits.
BS16957.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:49 Download gff for
BS16957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1468-PA | 106..621 | 17..532 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:44:08 Download gff for
BS16957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1468-RA | 128..644 | 16..532 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:35:25 Download gff for
BS16957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1468-RA | 128..644 | 16..532 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:35:25 Download gff for
BS16957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9878549..9878696 | 385..532 | 95 | -> | Minus |
X | 9878820..9879188 | 16..384 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:44:08 Download gff for
BS16957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9772582..9772729 | 385..532 | 95 | -> | Minus |
arm_X | 9772853..9773221 | 16..384 | 99 | | Minus |
BS16957.5prime Sequence
651 bp (651 high quality bases) assembled on 2007-05-15
> BS16957.5prime
GAAGTTATCAGTCGACATGAGCAGATCCCTGTTTCTAATTCTTTTATTGG
GAATCTCCTGCCTGGAGATTTTCCAGGCTCGCTCTCTTCTGGAGGGGAGA
AAACAAAGATTTGTGCGCAGACGCATATCACCCGACGATCCTGATCTCGA
GATCATCGAGGTCAAGGACGTCTACTACCGAAAGCGGCCCAAGAAGTTGG
TTGTCCAGCTCGATGATGACGAATTAAACTGGAAAATTCGCTGTGACTTC
GATCCAAGCAATCCGGAGTGTGGAGATGTAGTGAAGAAACCCGTGGCTCC
TATCAGGCCAACCACAACCACCAACCCCACCACAACCACTAGCAGAACCA
CCACCACCACCACAACTGAACCCACAACAGAACCCACAACTGAACCCACA
ACTGAACCCACAACTGAACCCACAACTGAACCCACAACTGAACCTACAAC
TGAACCGACAGAAGCACCAGATACAGATGATAATATCGAATTGTTCGGCG
ACAATGAAGAGGACTCTGAGGATCAGGAGGATCTAGATGATCAAGGAGAT
CAGGAGTATCAGGAGGTTGACCCCTATGGCACTTACGATAGCCAAATCCA
CTCAATTGGGGCTAATGATGACGGCAACTGGAATTAGAAGCTTTCTAGAC
C
BS16957.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1468-PA | 621 | CG1468-RA | 1..621 | 17..637 | 3105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:54:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1468-RA | 735 | CG1468-RA | 23..644 | 17..638 | 3110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:54:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9878820..9879188 | 270..638 | 1845 | 100 | Plus |
X | 23542271 | X | 9878444..9878698 | 17..271 | 1275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:54:27 has no hits.
BS16957.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:43 Download gff for
BS16957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1468-PA | 1..621 | 17..637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:23:42 Download gff for
BS16957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1468-RA | 19..644 | 13..638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:15:12 Download gff for
BS16957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1468-RA | 19..644 | 13..638 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:15:12 Download gff for
BS16957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9878440..9878696 | 13..269 | 99 | -> | Plus |
X | 9878820..9879188 | 270..638 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:23:42 Download gff for
BS16957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9772473..9772729 | 13..269 | 99 | -> | Plus |
arm_X | 9772853..9773221 | 270..638 | 100 | | Plus |
BS16957.complete Sequence
653 bp assembled on 2007-05-07
GenBank Submission: FJ638217
> BS16957.complete
GAAGTTATCAGTCGACATGAGCAGATCCCTGTTTCTAATTCTTTTATTGG
GAATCTCCTGCCTGGAGATTTTCCAGGCTCGCTCTCTTCTGGAGGGGAGA
AAACAAAGATTTGTGCGCAGACGCATATCACCCGACGATCCTGATCTCGA
GATCATCGAGGTCAAGGACGTCTACTACCGAAAGCGGCCCAAGAAGTTGG
TTGTCCAGCTCGATGATGACGAATTAAACTGGAAAATTCGCTGTGACTTC
GATCCAAGCAATCCGGAGTGTGGAGATGTAGTGAAGAAACCCGTGGCTCC
TATCAGGCCAACCACAACCACCAACCCCACCACAACCACTAGCAGAACCA
CCACCACCACCACAACTGAACCCACAACAGAACCCACAACTGAACCCACA
ACTGAACCCACAACTGAACCCACAACTGAACCCACAACTGAACCTACAAC
TGAACCGACAGAAGCACCAGATACAGATGATAATATCGAATTGTTCGGCG
ACAATGAAGAGGACTCTGAGGATCAGGAGGATCTAGATGATCAAGGAGAT
CAGGAGTATCAGGAGGTTGACCCCTATGGCACTTACGATAGCCAAATCCA
CTCAATTGGGGCTAATGATGACGGCAACTGGAATTAGAAGCTTTCTAGAC
CAT
BS16957.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:02:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1468-RA | 621 | CG1468-PA | 1..621 | 17..637 | 3105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:02:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1468-RA | 735 | CG1468-RA | 23..644 | 17..638 | 3110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:02:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9878820..9879188 | 270..638 | 1845 | 100 | Plus |
X | 23542271 | X | 9878444..9878698 | 17..271 | 1275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 17:02:30 has no hits.
BS16957.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:26 Download gff for
BS16957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1468-RA | 1..621 | 17..637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:06 Download gff for
BS16957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1468-RA | 19..644 | 13..638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:30 Download gff for
BS16957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1468-RA | 23..643 | 17..637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:26 Download gff for
BS16957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1468-RA | 19..644 | 13..638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:05 Download gff for
BS16957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1468-RA | 23..643 | 17..637 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:05 Download gff for
BS16957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9878444..9878696 | 17..269 | 100 | -> | Plus |
X | 9878820..9879187 | 270..637 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:30 Download gff for
BS16957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9772477..9772729 | 17..269 | 100 | -> | Plus |
arm_X | 9772853..9773220 | 270..637 | 100 | | Plus |
BS16957.pep Sequence
Translation from 16 to 636
> BS16957.pep
MSRSLFLILLLGISCLEIFQARSLLEGRKQRFVRRRISPDDPDLEIIEVK
DVYYRKRPKKLVVQLDDDELNWKIRCDFDPSNPECGDVVKKPVAPIRPTT
TTNPTTTTSRTTTTTTTEPTTEPTTEPTTEPTTEPTTEPTTEPTTEPTEA
PDTDDNIELFGDNEEDSEDQEDLDDQGDQEYQEVDPYGTYDSQIHSIGAN
DDGNWN*
BS16957.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1468-PA | 206 | CG1468-PA | 1..206 | 1..206 | 1102 | 100 | Plus |
Mur11Da-PD | 626 | CG32644-PD | 299..390 | 79..159 | 158 | 51.1 | Plus |
CG43710-PA | 340 | CG43710-PA | 107..179 | 80..151 | 157 | 47.9 | Plus |
CG14420-PA | 293 | CG14420-PA | 62..148 | 99..180 | 154 | 42.5 | Plus |
CG43710-PA | 340 | CG43710-PA | 116..193 | 81..158 | 151 | 43.6 | Plus |
CG43710-PA | 340 | CG43710-PA | 101..175 | 78..151 | 150 | 45.3 | Plus |
CG14420-PA | 293 | CG14420-PA | 49..142 | 89..185 | 147 | 37.1 | Plus |
CG14419-PA | 195 | CG14419-PA | 16..91 | 85..153 | 147 | 42.1 | Plus |