Clone BS16960 Report

Search the DGRC for BS16960

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:169
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG12822-RB
Protein status:BS16960.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16960.3prime Sequence

895 bp (740 high quality bases) assembled on 2007-05-15

> BS16960.3prime
ATGGTCTAGAAAGCTTTTAGGCGCTGCGCAGGTCGCCGTCCAGGGCGGTA
ACCTGGACATTCTCGTTGCGCCGGACCTGAACCACAGTCACCGTGCCGGC
CTTGTCATCAAATTTGCACGTCACCGTGACCTCCCGCAGCTGGAAGGTAA
ATATTTGCGAGCCATATTTTGTGCGCAAGTAAACGGAGCGCGGATCCGCC
TCCAGAATGTCCACGATGCACTGCTTCTCCACCTGCAGCTCCTTTAACTG
CGCCTCGGCATGCTCGTTAAAGGTCACGCTAAGTCTATTGCTGGCCACCA
CCCAGTTGGGCACTCGCACGGCGCTGGGTGGCGGCAGAATAGCGTCAGCT
CCAATGCCCGCGTTCCCGCTGTAGCCAGCTGCTCCATACAGTTCCAGGTC
CGATTCCTCTCCGTCAGGCTCCTGTCTGGAGTCGTAGAAGTCCAGGCTGC
TCTCATGCGGTCCAACAGAGGTTCTTCCTGAGTCAACGCTCAAGGATGGT
GCATCGTAGTGTGGAATGTAGGGCTTAATGTCCAACACGGGTGTGCCGTC
TACCATGTCCGTACCAAAGAAACTAATGGTGGCGTTCTCGATCTTCTCAA
TCTCCACCAACGAGAGACCAATGGGACACGGGCGGTGTGGAGATCGTGTG
GAAAACACACCCACCCGCTCCCCACCAAGACGGGGAGGCGCCACCTTGGC
CTTGGGGTGGGAATTGTTGCGGTGAAAATGATAGATGAGCCACAGATGGG
AAAAGTCCTCTAGTCCCTCCAAGGAGTGCTCCGGATTGGTGAACACACCG
TCGTTCAGTTGGATGATACCCCGCAGGCGACTGCCCACTATTGACTGCCT
CGGCACGGCCCGCTTCTCTGGGAATGCTGTCCGGATCACTCCTAT

BS16960.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12822-PB 1185 CG12822-RB 307..1185 895..17 4370 99.8 Minus
CG12822-PA 1239 CG12822-RA 776..1239 480..17 2320 100 Minus
CG12822-PA 1239 CG12822-RA 307..725 895..477 2070 99.7 Minus
CG18853-PA 993 CG18853-RA 307..508 895..694 985 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12822-RB 1468 CG12822-RB 440..1318 895..17 4380 99.9 Minus
CG12822-RA 1522 CG12822-RA 909..1372 480..17 2320 100 Minus
CG12822-RA 1522 CG12822-RA 440..858 895..477 2080 99.8 Minus
CG18853-RA 1157 CG18853-RA 439..640 895..694 995 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7833228..7833691 480..17 2320 100 Minus
2R 25286936 2R 7832759..7833177 895..477 2080 99.8 Minus
2R 25286936 2R 7829649..7829850 895..694 995 99.5 Minus
Blast to na_te.dros performed on 2015-02-10 16:04:42 has no hits.

BS16960.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:41:16 Download gff for BS16960.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12822-PB 307..1185 17..895 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:36:27 Download gff for BS16960.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 440..1321 11..895 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:55 Download gff for BS16960.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 440..1321 11..895 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:55 Download gff for BS16960.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7832759..7833176 478..895 99 -> Minus
2R 7833231..7833694 11..477 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:36:27 Download gff for BS16960.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3720264..3720681 478..895 99 -> Minus
arm_2R 3720736..3721199 11..477 99   Minus

BS16960.5prime Sequence

865 bp (741 high quality bases) assembled on 2007-05-15

> BS16960.5prime
GAAGTTATCAGTCGACATGCACGAGGATGATCTGAAGAGTCAGTTGACCA
TCGCGCGGAACGAGATCAACAATCTCAGGCAGCAAGTGCGCAACCTGCAG
CATGTGCAGCGCAAGGACATTGAGACGATAACCCGCCTGCTGCAGGACTT
CCGCTGCGAGGGGTGTGCGAACAACAACAAAAGCGCCAAGGACAAGGTCG
CCGGCGAGAAGCAGGAGCACCAGCACCAACAGCAGACGCAGGACCAGCAG
ACGGGCCAAGGTCAGAGCAATTATACCAATGGTGGGCACTGCTTGGGAGA
GGACTACGCACACTTTCGGCCCATAGGAGTGATCCGGACAGCATTCCCAG
AGAAGCGGGCCGTGCCGAGGCAGTCAATTGTGGGCAGTCGCCTGCGGGGT
ATCATCCAACTGAACGACGGTGTGTTCACCAATCCGGAGCACTCCTTGGA
GGGACTAGAGGACTTTTCCCATCTGTGGCTCATCTATCATTTTCACCGCA
ACAATTCCCACCCCAAGGCCAAGGTGGCGCCTCCCCGTCTTGGTGGGGAG
CGGGTGGGTGTGTTTTCCACACGATCTCCACACCGCCCGTGTCCCATTGG
TCTCTCGTTGGTGGAGATTGAGAAGATCGAGAACGCCACCATTAGTTTCT
TTGGTACGGACATGGTAGACGGCACACCCGTGTTGGACATTAAGCCCTAC
ATTCCACACTACGATGCACCATCCTTGAGCGTTGACTCANGAAGAACCTC
TGTTGGACCGCATGAGAGCAGCCTGGACTTCTACGACTCCAGACAGGAGC
CTGACGGAGAGGAATCGGACCTGGAACTGTATGAAGCAGCTGGCTACAGC
GGGAACGCGGGCATT

BS16960.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12822-PB 1185 CG12822-RB 1..849 17..865 4201 99.7 Plus
CG12822-PA 1239 CG12822-RA 1..723 17..739 3615 100 Plus
CG18853-PA 993 CG18853-RA 1..508 17..524 2540 100 Plus
CG12822-PA 1239 CG12822-RA 779..903 741..865 600 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG12822-RB 1468 CG12822-RB 134..982 17..865 4219 99.8 Plus
CG12822-RA 1522 CG12822-RA 134..856 17..739 3615 100 Plus
CG18853-RA 1157 CG18853-RA 133..640 17..524 2540 100 Plus
CG12822-RA 1522 CG12822-RA 912..1036 741..865 610 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7832700..7833175 264..739 2380 100 Plus
2R 25286936 2R 7829590..7829850 264..524 1305 100 Plus
2R 25286936 2R 7829343..7829532 76..265 950 100 Plus
2R 25286936 2R 7832453..7832642 76..265 950 100 Plus
2R 25286936 2R 7833231..7833355 741..865 610 99.2 Plus
2R 25286936 2R 7829194..7829256 17..79 315 100 Plus
2R 25286936 2R 7832304..7832366 17..79 315 100 Plus
Blast to na_te.dros performed 2015-02-13 06:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6712..6891 66..249 164 59.3 Plus

BS16960.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:34:43 Download gff for BS16960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12822-PB 1..849 17..865 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:24:12 Download gff for BS16960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 126..982 9..865 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:18:25 Download gff for BS16960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 126..982 9..865 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:18:25 Download gff for BS16960.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7832456..7832642 79..265 100 -> Plus
2R 7832296..7832365 9..78 95 -> Plus
2R 7832702..7833176 266..740 99 -> Plus
2R 7833231..7833355 741..865 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:24:12 Download gff for BS16960.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3719801..3719870 9..78 95 -> Plus
arm_2R 3719961..3720147 79..265 100 -> Plus
arm_2R 3720207..3720681 266..740 99 -> Plus
arm_2R 3720736..3720860 741..865 99   Plus

BS16960.complete Sequence

1217 bp assembled on 2007-05-07

GenBank Submission: FJ638218

> BS16960.complete
GAAGTTATCAGTCGACATGCACGAGGATGATCTGAAGAGTCAGTTGACCA
TCGCGCGGAACGAGATCAACAATCTCAGGCAGCAAGTGCGCAACCTGCAG
CATGTGCAGCGCAAGGACATTGAGACGATAACCCGCCTGCTGCAGGACTT
CCGCTGCGAGGGGTGTGCGAACAACAACAAAAGCGCCAAGGACAAGGTCG
CCGGCGAGAAGCAGGAGCACCAGCACCAACAGCAGACGCAGGACCAGCAG
ACGGGCCAAGGTCAGAGCAATTATACCAATGGTGGGCACTGCTTGGGAGA
GGACTACGCACACTTTCGGCCCATAGGAGTGATCCGGACAGCATTCCCAG
AGAAGCGGGCCGTGCCGAGGCAGTCAATTGTGGGCAGTCGCCTGCGGGGT
ATCATCCAACTGAACGACGGTGTGTTCACCAATCCGGAGCACTCCTTGGA
GGGACTAGAGGACTTTTCCCATCTGTGGCTCATCTATCATTTTCACCGCA
ACAATTCCCACCCCAAGGCCAAGGTGGCGCCTCCCCGTCTTGGTGGGGAG
CGGGTGGGTGTGTTTTCCACACGATCTCCACACCGCCCGTGTCCCATTGG
TCTCTCGTTGGTGGAGATTGAGAAGATCGAGAACGCCACCATTAGTTTCT
TTGGTACGGACATGGTAGACGGCACACCCGTGTTGGACATTAAGCCCTAC
ATTCCACACTACGATGCACCATCCTTGAGCGTTGACTCAGGAAGAACCTC
TGTTGGACCGCATGAGAGCAGCCTGGACTTCTACGACTCCAGACAGGAGC
CTGACGGAGAGGAATCGGACCTGGAACTGTATGGAGCAGCTGGCTACAGC
GGGAACGCGGGCATTGGAGCTGACGCTATTCTGCCGCCACCCAGCGCCGT
GCGAGTGCCCAACTGGGTGGTGGCCAGCAATAGACTTAGCGTGACCTTTA
ACGAGCATGCCGAGGCGCAGTTAAAGGAGCTGCAGGTGGAGAAGCAGTGC
ATCGTGGACATTCTGGAGGCGGATCCGCGCTCCGTTTACTTGCGCACAAA
ATATGGCTCGCAAATATTTACCTTCCAGCTGCGGGAGGTCACGGTGACGT
GCAAATTTGATGACAAGGCCGGCACGGTGACTGTGGTTCAGGTCCGGCGC
AACGAGAATGTCCAGGTTACCGCCCTGGACGGCGACCTGCGCAGCGCCTA
AAAGCTTTCTAGACCAT

BS16960.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG12822-RB 1185 CG12822-PB 1..1185 17..1201 5925 100 Plus
CG12822-RA 1239 CG12822-PA 1..725 17..741 3625 100 Plus
CG18853-RA 993 CG18853-PA 1..508 17..524 2540 100 Plus
CG12822-RA 1239 CG12822-PA 776..1239 738..1201 2320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12822-RB 1468 CG12822-RB 134..1318 17..1201 5925 100 Plus
CG12822-RA 1522 CG12822-RA 134..858 17..741 3625 100 Plus
CG18853-RA 1157 CG18853-RA 133..640 17..524 2540 100 Plus
CG12822-RA 1522 CG12822-RA 909..1372 738..1201 2320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7832700..7833177 264..741 2390 100 Plus
2R 25286936 2R 7833228..7833691 738..1201 2320 100 Plus
2R 25286936 2R 7829590..7829850 264..524 1305 100 Plus
2R 25286936 2R 7832453..7832642 76..265 950 100 Plus
2R 25286936 2R 7829343..7829532 76..265 950 100 Plus
2R 25286936 2R 7829194..7829256 17..79 315 100 Plus
2R 25286936 2R 7832304..7832366 17..79 315 100 Plus
Blast to na_te.dros performed 2014-11-27 14:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6712..6891 66..249 164 59.3 Plus

BS16960.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:17 Download gff for BS16960.complete
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 1..1185 17..1201 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:16 Download gff for BS16960.complete
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 130..1325 9..1207 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:10 Download gff for BS16960.complete
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 134..1316 17..1199 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:17 Download gff for BS16960.complete
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 130..1325 9..1207 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:52 Download gff for BS16960.complete
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 134..1316 17..1199 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:52 Download gff for BS16960.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7832304..7832365 17..78 100 -> Plus
2R 7832456..7832642 79..265 100 -> Plus
2R 7832702..7833176 266..740 100 -> Plus
2R 7833231..7833689 741..1199 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:10 Download gff for BS16960.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3719809..3719870 17..78 100 -> Plus
arm_2R 3719961..3720147 79..265 100 -> Plus
arm_2R 3720207..3720681 266..740 100 -> Plus
arm_2R 3720736..3721194 741..1199 100   Plus

BS16960.pep Sequence

Translation from 16 to 1200

> BS16960.pep
MHEDDLKSQLTIARNEINNLRQQVRNLQHVQRKDIETITRLLQDFRCEGC
ANNNKSAKDKVAGEKQEHQHQQQTQDQQTGQGQSNYTNGGHCLGEDYAHF
RPIGVIRTAFPEKRAVPRQSIVGSRLRGIIQLNDGVFTNPEHSLEGLEDF
SHLWLIYHFHRNNSHPKAKVAPPRLGGERVGVFSTRSPHRPCPIGLSLVE
IEKIENATISFFGTDMVDGTPVLDIKPYIPHYDAPSLSVDSGRTSVGPHE
SSLDFYDSRQEPDGEESDLELYGAAGYSGNAGIGADAILPPPSAVRVPNW
VVASNRLSVTFNEHAEAQLKELQVEKQCIVDILEADPRSVYLRTKYGSQI
FTFQLREVTVTCKFDDKAGTVTVVQVRRNENVQVTALDGDLRSA*

BS16960.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG12822-PB 394 CG12822-PB 1..394 1..394 2068 100 Plus
CG12822-PA 412 CG12822-PA 1..412 1..394 2039 95.6 Plus
CG18853-PA 330 CG18853-PA 1..213 1..203 907 83.8 Plus