Clone Sequence Records
BS16960.3prime Sequence
895 bp (740 high quality bases) assembled on 2007-05-15
> BS16960.3prime
ATGGTCTAGAAAGCTTTTAGGCGCTGCGCAGGTCGCCGTCCAGGGCGGTA
ACCTGGACATTCTCGTTGCGCCGGACCTGAACCACAGTCACCGTGCCGGC
CTTGTCATCAAATTTGCACGTCACCGTGACCTCCCGCAGCTGGAAGGTAA
ATATTTGCGAGCCATATTTTGTGCGCAAGTAAACGGAGCGCGGATCCGCC
TCCAGAATGTCCACGATGCACTGCTTCTCCACCTGCAGCTCCTTTAACTG
CGCCTCGGCATGCTCGTTAAAGGTCACGCTAAGTCTATTGCTGGCCACCA
CCCAGTTGGGCACTCGCACGGCGCTGGGTGGCGGCAGAATAGCGTCAGCT
CCAATGCCCGCGTTCCCGCTGTAGCCAGCTGCTCCATACAGTTCCAGGTC
CGATTCCTCTCCGTCAGGCTCCTGTCTGGAGTCGTAGAAGTCCAGGCTGC
TCTCATGCGGTCCAACAGAGGTTCTTCCTGAGTCAACGCTCAAGGATGGT
GCATCGTAGTGTGGAATGTAGGGCTTAATGTCCAACACGGGTGTGCCGTC
TACCATGTCCGTACCAAAGAAACTAATGGTGGCGTTCTCGATCTTCTCAA
TCTCCACCAACGAGAGACCAATGGGACACGGGCGGTGTGGAGATCGTGTG
GAAAACACACCCACCCGCTCCCCACCAAGACGGGGAGGCGCCACCTTGGC
CTTGGGGTGGGAATTGTTGCGGTGAAAATGATAGATGAGCCACAGATGGG
AAAAGTCCTCTAGTCCCTCCAAGGAGTGCTCCGGATTGGTGAACACACCG
TCGTTCAGTTGGATGATACCCCGCAGGCGACTGCCCACTATTGACTGCCT
CGGCACGGCCCGCTTCTCTGGGAATGCTGTCCGGATCACTCCTAT
BS16960.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:41:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12822-PB | 1185 | CG12822-RB | 307..1185 | 895..17 | 4370 | 99.8 | Minus |
CG12822-PA | 1239 | CG12822-RA | 776..1239 | 480..17 | 2320 | 100 | Minus |
CG12822-PA | 1239 | CG12822-RA | 307..725 | 895..477 | 2070 | 99.7 | Minus |
CG18853-PA | 993 | CG18853-RA | 307..508 | 895..694 | 985 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:04:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12822-RB | 1468 | CG12822-RB | 440..1318 | 895..17 | 4380 | 99.9 | Minus |
CG12822-RA | 1522 | CG12822-RA | 909..1372 | 480..17 | 2320 | 100 | Minus |
CG12822-RA | 1522 | CG12822-RA | 440..858 | 895..477 | 2080 | 99.8 | Minus |
CG18853-RA | 1157 | CG18853-RA | 439..640 | 895..694 | 995 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:04:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7833228..7833691 | 480..17 | 2320 | 100 | Minus |
2R | 25286936 | 2R | 7832759..7833177 | 895..477 | 2080 | 99.8 | Minus |
2R | 25286936 | 2R | 7829649..7829850 | 895..694 | 995 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:04:42 has no hits.
BS16960.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:41:16 Download gff for
BS16960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12822-PB | 307..1185 | 17..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:36:27 Download gff for
BS16960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12822-RB | 440..1321 | 11..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:55 Download gff for
BS16960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12822-RB | 440..1321 | 11..895 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:55 Download gff for
BS16960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7832759..7833176 | 478..895 | 99 | -> | Minus |
2R | 7833231..7833694 | 11..477 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:36:27 Download gff for
BS16960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3720264..3720681 | 478..895 | 99 | -> | Minus |
arm_2R | 3720736..3721199 | 11..477 | 99 | | Minus |
BS16960.5prime Sequence
865 bp (741 high quality bases) assembled on 2007-05-15
> BS16960.5prime
GAAGTTATCAGTCGACATGCACGAGGATGATCTGAAGAGTCAGTTGACCA
TCGCGCGGAACGAGATCAACAATCTCAGGCAGCAAGTGCGCAACCTGCAG
CATGTGCAGCGCAAGGACATTGAGACGATAACCCGCCTGCTGCAGGACTT
CCGCTGCGAGGGGTGTGCGAACAACAACAAAAGCGCCAAGGACAAGGTCG
CCGGCGAGAAGCAGGAGCACCAGCACCAACAGCAGACGCAGGACCAGCAG
ACGGGCCAAGGTCAGAGCAATTATACCAATGGTGGGCACTGCTTGGGAGA
GGACTACGCACACTTTCGGCCCATAGGAGTGATCCGGACAGCATTCCCAG
AGAAGCGGGCCGTGCCGAGGCAGTCAATTGTGGGCAGTCGCCTGCGGGGT
ATCATCCAACTGAACGACGGTGTGTTCACCAATCCGGAGCACTCCTTGGA
GGGACTAGAGGACTTTTCCCATCTGTGGCTCATCTATCATTTTCACCGCA
ACAATTCCCACCCCAAGGCCAAGGTGGCGCCTCCCCGTCTTGGTGGGGAG
CGGGTGGGTGTGTTTTCCACACGATCTCCACACCGCCCGTGTCCCATTGG
TCTCTCGTTGGTGGAGATTGAGAAGATCGAGAACGCCACCATTAGTTTCT
TTGGTACGGACATGGTAGACGGCACACCCGTGTTGGACATTAAGCCCTAC
ATTCCACACTACGATGCACCATCCTTGAGCGTTGACTCANGAAGAACCTC
TGTTGGACCGCATGAGAGCAGCCTGGACTTCTACGACTCCAGACAGGAGC
CTGACGGAGAGGAATCGGACCTGGAACTGTATGAAGCAGCTGGCTACAGC
GGGAACGCGGGCATT
BS16960.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:34:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12822-PB | 1185 | CG12822-RB | 1..849 | 17..865 | 4201 | 99.7 | Plus |
CG12822-PA | 1239 | CG12822-RA | 1..723 | 17..739 | 3615 | 100 | Plus |
CG18853-PA | 993 | CG18853-RA | 1..508 | 17..524 | 2540 | 100 | Plus |
CG12822-PA | 1239 | CG12822-RA | 779..903 | 741..865 | 600 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:55:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12822-RB | 1468 | CG12822-RB | 134..982 | 17..865 | 4219 | 99.8 | Plus |
CG12822-RA | 1522 | CG12822-RA | 134..856 | 17..739 | 3615 | 100 | Plus |
CG18853-RA | 1157 | CG18853-RA | 133..640 | 17..524 | 2540 | 100 | Plus |
CG12822-RA | 1522 | CG12822-RA | 912..1036 | 741..865 | 610 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:55:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7832700..7833175 | 264..739 | 2380 | 100 | Plus |
2R | 25286936 | 2R | 7829590..7829850 | 264..524 | 1305 | 100 | Plus |
2R | 25286936 | 2R | 7829343..7829532 | 76..265 | 950 | 100 | Plus |
2R | 25286936 | 2R | 7832453..7832642 | 76..265 | 950 | 100 | Plus |
2R | 25286936 | 2R | 7833231..7833355 | 741..865 | 610 | 99.2 | Plus |
2R | 25286936 | 2R | 7829194..7829256 | 17..79 | 315 | 100 | Plus |
2R | 25286936 | 2R | 7832304..7832366 | 17..79 | 315 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 06:55:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6712..6891 | 66..249 | 164 | 59.3 | Plus |
BS16960.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:34:43 Download gff for
BS16960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12822-PB | 1..849 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:24:12 Download gff for
BS16960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12822-RB | 126..982 | 9..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:18:25 Download gff for
BS16960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12822-RB | 126..982 | 9..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:18:25 Download gff for
BS16960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7832456..7832642 | 79..265 | 100 | -> | Plus |
2R | 7832296..7832365 | 9..78 | 95 | -> | Plus |
2R | 7832702..7833176 | 266..740 | 99 | -> | Plus |
2R | 7833231..7833355 | 741..865 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:24:12 Download gff for
BS16960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3719801..3719870 | 9..78 | 95 | -> | Plus |
arm_2R | 3719961..3720147 | 79..265 | 100 | -> | Plus |
arm_2R | 3720207..3720681 | 266..740 | 99 | -> | Plus |
arm_2R | 3720736..3720860 | 741..865 | 99 | | Plus |
BS16960.complete Sequence
1217 bp assembled on 2007-05-07
GenBank Submission: FJ638218
> BS16960.complete
GAAGTTATCAGTCGACATGCACGAGGATGATCTGAAGAGTCAGTTGACCA
TCGCGCGGAACGAGATCAACAATCTCAGGCAGCAAGTGCGCAACCTGCAG
CATGTGCAGCGCAAGGACATTGAGACGATAACCCGCCTGCTGCAGGACTT
CCGCTGCGAGGGGTGTGCGAACAACAACAAAAGCGCCAAGGACAAGGTCG
CCGGCGAGAAGCAGGAGCACCAGCACCAACAGCAGACGCAGGACCAGCAG
ACGGGCCAAGGTCAGAGCAATTATACCAATGGTGGGCACTGCTTGGGAGA
GGACTACGCACACTTTCGGCCCATAGGAGTGATCCGGACAGCATTCCCAG
AGAAGCGGGCCGTGCCGAGGCAGTCAATTGTGGGCAGTCGCCTGCGGGGT
ATCATCCAACTGAACGACGGTGTGTTCACCAATCCGGAGCACTCCTTGGA
GGGACTAGAGGACTTTTCCCATCTGTGGCTCATCTATCATTTTCACCGCA
ACAATTCCCACCCCAAGGCCAAGGTGGCGCCTCCCCGTCTTGGTGGGGAG
CGGGTGGGTGTGTTTTCCACACGATCTCCACACCGCCCGTGTCCCATTGG
TCTCTCGTTGGTGGAGATTGAGAAGATCGAGAACGCCACCATTAGTTTCT
TTGGTACGGACATGGTAGACGGCACACCCGTGTTGGACATTAAGCCCTAC
ATTCCACACTACGATGCACCATCCTTGAGCGTTGACTCAGGAAGAACCTC
TGTTGGACCGCATGAGAGCAGCCTGGACTTCTACGACTCCAGACAGGAGC
CTGACGGAGAGGAATCGGACCTGGAACTGTATGGAGCAGCTGGCTACAGC
GGGAACGCGGGCATTGGAGCTGACGCTATTCTGCCGCCACCCAGCGCCGT
GCGAGTGCCCAACTGGGTGGTGGCCAGCAATAGACTTAGCGTGACCTTTA
ACGAGCATGCCGAGGCGCAGTTAAAGGAGCTGCAGGTGGAGAAGCAGTGC
ATCGTGGACATTCTGGAGGCGGATCCGCGCTCCGTTTACTTGCGCACAAA
ATATGGCTCGCAAATATTTACCTTCCAGCTGCGGGAGGTCACGGTGACGT
GCAAATTTGATGACAAGGCCGGCACGGTGACTGTGGTTCAGGTCCGGCGC
AACGAGAATGTCCAGGTTACCGCCCTGGACGGCGACCTGCGCAGCGCCTA
AAAGCTTTCTAGACCAT
BS16960.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:50:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12822-RB | 1185 | CG12822-PB | 1..1185 | 17..1201 | 5925 | 100 | Plus |
CG12822-RA | 1239 | CG12822-PA | 1..725 | 17..741 | 3625 | 100 | Plus |
CG18853-RA | 993 | CG18853-PA | 1..508 | 17..524 | 2540 | 100 | Plus |
CG12822-RA | 1239 | CG12822-PA | 776..1239 | 738..1201 | 2320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12822-RB | 1468 | CG12822-RB | 134..1318 | 17..1201 | 5925 | 100 | Plus |
CG12822-RA | 1522 | CG12822-RA | 134..858 | 17..741 | 3625 | 100 | Plus |
CG18853-RA | 1157 | CG18853-RA | 133..640 | 17..524 | 2540 | 100 | Plus |
CG12822-RA | 1522 | CG12822-RA | 909..1372 | 738..1201 | 2320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7832700..7833177 | 264..741 | 2390 | 100 | Plus |
2R | 25286936 | 2R | 7833228..7833691 | 738..1201 | 2320 | 100 | Plus |
2R | 25286936 | 2R | 7829590..7829850 | 264..524 | 1305 | 100 | Plus |
2R | 25286936 | 2R | 7832453..7832642 | 76..265 | 950 | 100 | Plus |
2R | 25286936 | 2R | 7829343..7829532 | 76..265 | 950 | 100 | Plus |
2R | 25286936 | 2R | 7829194..7829256 | 17..79 | 315 | 100 | Plus |
2R | 25286936 | 2R | 7832304..7832366 | 17..79 | 315 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:50:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6712..6891 | 66..249 | 164 | 59.3 | Plus |
BS16960.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:17 Download gff for
BS16960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12822-RB | 1..1185 | 17..1201 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:16 Download gff for
BS16960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12822-RB | 130..1325 | 9..1207 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:10 Download gff for
BS16960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12822-RB | 134..1316 | 17..1199 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:17 Download gff for
BS16960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12822-RB | 130..1325 | 9..1207 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:52 Download gff for
BS16960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12822-RB | 134..1316 | 17..1199 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:52 Download gff for
BS16960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7832304..7832365 | 17..78 | 100 | -> | Plus |
2R | 7832456..7832642 | 79..265 | 100 | -> | Plus |
2R | 7832702..7833176 | 266..740 | 100 | -> | Plus |
2R | 7833231..7833689 | 741..1199 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:10 Download gff for
BS16960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3719809..3719870 | 17..78 | 100 | -> | Plus |
arm_2R | 3719961..3720147 | 79..265 | 100 | -> | Plus |
arm_2R | 3720207..3720681 | 266..740 | 100 | -> | Plus |
arm_2R | 3720736..3721194 | 741..1199 | 100 | | Plus |
BS16960.pep Sequence
Translation from 16 to 1200
> BS16960.pep
MHEDDLKSQLTIARNEINNLRQQVRNLQHVQRKDIETITRLLQDFRCEGC
ANNNKSAKDKVAGEKQEHQHQQQTQDQQTGQGQSNYTNGGHCLGEDYAHF
RPIGVIRTAFPEKRAVPRQSIVGSRLRGIIQLNDGVFTNPEHSLEGLEDF
SHLWLIYHFHRNNSHPKAKVAPPRLGGERVGVFSTRSPHRPCPIGLSLVE
IEKIENATISFFGTDMVDGTPVLDIKPYIPHYDAPSLSVDSGRTSVGPHE
SSLDFYDSRQEPDGEESDLELYGAAGYSGNAGIGADAILPPPSAVRVPNW
VVASNRLSVTFNEHAEAQLKELQVEKQCIVDILEADPRSVYLRTKYGSQI
FTFQLREVTVTCKFDDKAGTVTVVQVRRNENVQVTALDGDLRSA*
BS16960.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12822-PB | 394 | CG12822-PB | 1..394 | 1..394 | 2068 | 100 | Plus |
CG12822-PA | 412 | CG12822-PA | 1..412 | 1..394 | 2039 | 95.6 | Plus |
CG18853-PA | 330 | CG18853-PA | 1..213 | 1..203 | 907 | 83.8 | Plus |