Clone Sequence Records
BS16961.complete Sequence
1847 bp assembled on 2009-12-07
GenBank Submission: KX805706
> BS16961.complete
GAAGTTATCAGTCGACATGGTATCGCCGCGCAAGCTGGCATCGTCCTACG
GCCCAAGAGTATCCCAATCGGAACCGAACAATCTGATGGCAGCGTCGGCA
AAGAGCTGTGAGAGCCTATTCTCGGCCAGCTCCCGGGAGTCGGCCAGCCT
GATCTACCAGCGCAGCAAGCCGCCACCGCCCCAACAACGTGGCGGCGTGA
AGGGTTCCGGCAGTATGAGCTCCCAGAACCACAGCGAGATCCATCAGCGC
GTCATGTCCGCGAGGAATCTGCGCGCCAAGACCTTCCAGAACCAACTGGC
CGATGCCCAGGCGGAGATTGCCAATCTGGCGCACGAGAATCGCATGCTGC
GCACGCTTCACAATCGCCAGTCATCGGCGCTGAATAAGTACGAGGCCCAC
AACGCTGAGCTGCCCAAGTTGCTAAGCTCACATGCCGAGGAGCTGCGCAT
GTGGCAGACCAAGTACCGCAAACTGCAGGCTGCGAACAAGGCTCTGGAGC
TAAAGCTCAAGCAGAAGGAGGAAATCATCCTGACGCTGAGCGATCAGAAC
AAGCACTACAGTCAGCTCAACAAGGATAAGAATCTCGACGAGCGGCAAAA
GCTTCAGGAGAAGTTAAAATCCCTGGAGCAGCGTCTGGAGGAGAAGGACA
ACGACATGAAACTGATGGCCCGCAAGGTGCAGCTGGAGTCGAAGAACATC
CGCCAGCAACTGCTCAACGAGCAAAGGAAGGGCAAGGAGGTGATGCTGAA
GCTGGAGAAGGCCAAGCTGGAGATCAGTGGATACCGCAAGCTGGAGGAGT
ACACTCTCGGCACTGACAAGGTGAATCCCCTGTCCTCCGGTCGACGAACC
AAACTGAGTGGCGTCACCGATGAGCCGGACAAGATCGACAAGTTGGAGAA
GTCAATGGAGATGCTGGACAAGGCCATCGAGAAGAACAACCAGAGCGAAT
TCACGGCCTTGACGGATGTGATGGAGTCGGAATCGTTCTACGATTTCGAA
AAGGACAGTGCCGAAGACAAGAGTGGACCCAACACTCCACCTAGTCAAAT
CGAACGACAGGTGGGCGGGCGCGGCGGTAAGCTTATCCTGCCGCCCGCCA
CGAACCATGCTAAGATGGGACAGAAAGCCAATCGGTCCACTTTGAGCCAA
GTGCTCTCGGCCCAGGGAAAGATTTCGGTATCTTCTGGAAAATCTGCTAA
ATCACGCATTGCCGTTGCAGTGCCGAAGATGGAAAGTGTCCAGGTTAGCA
AGCGTCGCGAACCGGAGACCGTGTCCAGACTGGCTTCCGCCGAAACCAAG
CCCAAGCAGAAGCCTCTGGAGTACGAGTACGAGGACGACTATGAGCCGGC
TGGCGAAGATGGTGATGACGACGCCTACGGCATGATGAGCAAGATGTGCG
AGGGAGAGGAACCACAGGACAACAGCGAAGAGAATGCCAACGAAAGCAGT
CTATTGAAATACTCCGCATACATGGATAACAAGAGTAGCGAGGGCGATCC
CCTAGAGGAATCAATGGAGGAGTACGACGGAACTGATGGTCAACAATCGC
AGGGCAGCGACGATGAGGACATTAGTGTACGTGCTCCGCGTCTGAAGGAG
AACATGTCCAGCCTGCGCAAGCAGATCTCGAATGATTTCAAGGAGCGCGA
GAGCTTCCTGAAGACGTTCTGTCGCCAGGCCAGTAATAGCAATATGCGCG
ACGATTCCGCGTCGAAGAAGAGGAACAGCATCGCGACCGGAGCGGCGGCC
AGTAGCCACATGACCGGCAGTCGCAAGAATGCCCTTTTGGCCGCTCTAAA
GACGATCGACGACAACAAGAGCCAGGACTAGAAGCTTTCTAGACCAT
BS16961.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:40:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6652-RA | 1815 | CG6652-PA | 1..1815 | 17..1831 | 9075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6652-RA | 2244 | CG6652-RA | 224..2039 | 17..1832 | 9080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17020884..17021646 | 1568..806 | 3815 | 100 | Minus |
| 3L | 28110227 | 3L | 17021997..17022486 | 580..91 | 2450 | 100 | Minus |
| 3L | 28110227 | 3L | 17020553..17020819 | 1832..1566 | 1335 | 100 | Minus |
| 3L | 28110227 | 3L | 17021700..17021925 | 805..580 | 1130 | 100 | Minus |
| 3L | 28110227 | 3L | 17022560..17022633 | 90..17 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:40:00 has no hits.
BS16961.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:18 Download gff for
BS16961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6652-RA | 1..1815 | 17..1831 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:19 Download gff for
BS16961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6652-RA | 224..2038 | 17..1831 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:11 Download gff for
BS16961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6652-RA | 224..2038 | 17..1831 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:54 Download gff for
BS16961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6652-RA | 224..2038 | 17..1831 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:04 Download gff for
BS16961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6652-RA | 224..2038 | 17..1831 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:04 Download gff for
BS16961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17020554..17020817 | 1568..1831 | 100 | <- | Minus |
| 3L | 17020885..17021646 | 806..1567 | 100 | <- | Minus |
| 3L | 17021700..17021925 | 580..805 | 100 | <- | Minus |
| 3L | 17021998..17022486 | 91..579 | 100 | <- | Minus |
| 3L | 17022560..17022633 | 17..90 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:11 Download gff for
BS16961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17013654..17013917 | 1568..1831 | 100 | <- | Minus |
| arm_3L | 17013985..17014746 | 806..1567 | 100 | <- | Minus |
| arm_3L | 17014800..17015025 | 580..805 | 100 | <- | Minus |
| arm_3L | 17015098..17015586 | 91..579 | 100 | <- | Minus |
| arm_3L | 17015660..17015733 | 17..90 | 100 | | Minus |
BS16961.3prime Sequence
886 bp (814 high quality bases) assembled on 2007-05-15
> BS16961.3prime
ATGGTCTAGAAAGCTTCTAGTCCTGGCTCTTGTTGTCGTCGATCGTCTTT
AGAGCGGCCAAAAGGGCATTCTTGCGACTGCCGGTCATGTGGCTACTGGC
CGCCGCTCCGGTCGCGATGCTGTTCCTCTTCTTCGACGCGGAATCGTCGC
GCATATTGCTATTACTGGCCTGGCGACAGAACGTCTTCAGGAAGCTCTCG
CGCTCCTTGAAATCATTCGAGATCTGCTTGCGCAGGCTGGACATGTTCTC
CTTCAGACGCGGAGCACGTACACTAATGTCCTCATCGTCGCTGCCCTGCG
ATTGTTGACCATCAGTTCCGTCGTACTCCTCCATTGATTCCTCTAGGGGA
TCGCCCTCGCTACTCTTGTTATCCATGTATGCGGAGTATTTCAATAGACT
GCTTTCGTTGGCATTCTCTTCGCTGTTGTCCTGTGGTTCCTCTCCCTCGC
ACATCTTGCTCATCATGCCGTAGGCGTCGTCATCACCATCTTCGCCAGCC
GGCTCATAGTCGTCCTCGTACTCGTACTCCAGAGGCTTCTGCTTGGGCTT
GGTTTCGGCGGAAGCCAGTCTGGACACGGTCTCCGGTTCGCGACGCTTGC
TAACCTGGACACTTTCCATCTTCGGCACTGCAACGGCAATGCGTGATTTA
GCAGATTTTCCAGAAGATACCGAAATCTTTCCCTGGGCCGAGAGCACTTG
GCTCAAAGTGGACCGATTGGCTTTCTGTCCCATCTTAGCATGGTTCGTGG
CGGGCGGCAGGATAAGCTTACCGCCGCGCCCGCCCACCTGTCGTTCGATT
TGACTAGGTGGAGTGTTGGGTCCACTCTTGTCTTCGGCACTGTCTTTTTC
GAAATCGTAGAACGATTCCGACTCCATCACATCGGT
BS16961.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6652-PA | 1815 | CG6652-RA | 949..1815 | 883..17 | 4310 | 99.8 | Minus |
| CG6652-PB | 1710 | CG6652-RB | 844..1710 | 883..17 | 4310 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:14:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6652-RA | 2244 | CG6652-RA | 1172..2039 | 883..16 | 4325 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:14:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17020884..17021487 | 280..883 | 3005 | 99.8 | Plus |
| 3L | 28110227 | 3L | 17020553..17020819 | 16..282 | 1335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:14:26 has no hits.
BS16961.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:37:54 Download gff for
BS16961.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6652-PB | 841..1710 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:29:02 Download gff for
BS16961.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6652-RA | 1169..2039 | 16..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:39:59 Download gff for
BS16961.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6652-RA | 1169..2039 | 16..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:39:59 Download gff for
BS16961.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17020553..17020817 | 16..280 | 100 | <- | Plus |
| 3L | 17020885..17021490 | 281..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:29:02 Download gff for
BS16961.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17013653..17013917 | 16..280 | 100 | <- | Plus |
| arm_3L | 17013985..17014590 | 281..886 | 99 | | Plus |
BS16961.5prime Sequence
815 bp (726 high quality bases) assembled on 2007-05-15
> BS16961.5prime
GAAGTTATCAGTCGACATGGTATCGCCGCGCAAGCTGGCATCGTCCTACG
GCCCAAGAGTATCCCAATCGGAACCGAACAATCTGATGGCAGCGTCGGCA
AAGAGCTGTGAGAGCCTATTCTCGGCCAGCTCCCGGGAGTCGGCCAGCCT
GATCTACCAGCGCAGCAAGCCGCCACCGCCCCAACAACGTGGCGGCGTGA
AGGGTTCCGGCAGTATGAGCTCCCAGAACCACAGCGAGATCCATCAGCGC
GTCATGTCCGCGAGGAATCTGCGCGCCAAGACCTTCCAGAACCAACTGGC
CGATGCCCAGGCGGAGATTGCCAATCTGGCGCACGAGAATCGCATGCTGC
GCACGCTTCACAATCGCCAGTCATCGGCGCTGAATAAGTACGAGGCCCAC
AACGCTGAGCTGCCCAAGTTGCTAAGCTCACATGCCGAGGAGCTGCGCAT
GTGGCAGACCAAGTACCGCAAACTGCAGGCTGCGAACAAGGCTCTGGAGC
TAAAGCTCAAGCAGAAGGAGGAAATCATCCTGACGCTGAGCGATCAGAAC
AAGCACTACAGTCAGCTCAACAAGGATAAGAATCTCGACGAGCGGCAAAA
GCTTCAGGAGAAGTTAAAATCCCTGGAGCAGCGTCTGGAGGAGAAGGACA
ACGACATGAAACTGATGGCCCGCAAGGTGCAGCTGGAGTCGAAGAACATC
CGCCAGCAACTGCTCAACGAGCAAAGGAAGGGCAAGGAGGTGATGCTGAA
GCTGGAGAAGGCCAAGCTGGAGATCAGTGGATACCGCAAGCTGGAGGAGT
ACACTCTCGGCACTG
BS16961.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6652-PA | 1815 | CG6652-RA | 1..799 | 17..815 | 3995 | 100 | Plus |
| CG6652-PB | 1710 | CG6652-RB | 1..789 | 17..805 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:50:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6652-RA | 2244 | CG6652-RA | 224..1022 | 17..815 | 3995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:50:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17021997..17022486 | 580..91 | 2450 | 100 | Minus |
| 3L | 28110227 | 3L | 17021700..17021925 | 805..580 | 1130 | 100 | Minus |
| 3L | 28110227 | 3L | 17022560..17022633 | 90..17 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:50:40 has no hits.
BS16961.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:48 Download gff for
BS16961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6652-PA | 1..799 | 17..815 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:23 Download gff for
BS16961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6652-RA | 224..1022 | 17..815 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:10 Download gff for
BS16961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6652-RA | 224..1022 | 17..815 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:10 Download gff for
BS16961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17021690..17021925 | 580..815 | 97 | <- | Minus |
| 3L | 17021998..17022486 | 91..579 | 100 | <- | Minus |
| 3L | 17022560..17022633 | 17..90 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:23 Download gff for
BS16961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17014790..17015025 | 580..815 | 97 | <- | Minus |
| arm_3L | 17015098..17015586 | 91..579 | 100 | <- | Minus |
| arm_3L | 17015660..17015733 | 17..90 | 100 | | Minus |
BS16961.pep Sequence
Translation from 16 to 1830
> BS16961.pep
MVSPRKLASSYGPRVSQSEPNNLMAASAKSCESLFSASSRESASLIYQRS
KPPPPQQRGGVKGSGSMSSQNHSEIHQRVMSARNLRAKTFQNQLADAQAE
IANLAHENRMLRTLHNRQSSALNKYEAHNAELPKLLSSHAEELRMWQTKY
RKLQAANKALELKLKQKEEIILTLSDQNKHYSQLNKDKNLDERQKLQEKL
KSLEQRLEEKDNDMKLMARKVQLESKNIRQQLLNEQRKGKEVMLKLEKAK
LEISGYRKLEEYTLGTDKVNPLSSGRRTKLSGVTDEPDKIDKLEKSMEML
DKAIEKNNQSEFTALTDVMESESFYDFEKDSAEDKSGPNTPPSQIERQVG
GRGGKLILPPATNHAKMGQKANRSTLSQVLSAQGKISVSSGKSAKSRIAV
AVPKMESVQVSKRREPETVSRLASAETKPKQKPLEYEYEDDYEPAGEDGD
DDAYGMMSKMCEGEEPQDNSEENANESSLLKYSAYMDNKSSEGDPLEESM
EEYDGTDGQQSQGSDDEDISVRAPRLKENMSSLRKQISNDFKERESFLKT
FCRQASNSNMRDDSASKKRNSIATGAAASSHMTGSRKNALLAALKTIDDN
KSQD*
BS16961.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:21:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6652-PA | 604 | CG6652-PA | 1..604 | 1..604 | 3033 | 100 | Plus |
