Clone BS16962 Report

Search the DGRC for BS16962

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:169
Well:62
Vector:pDNR-Dual
Associated Gene/Transcriptjdp-RA
Protein status:BS16962.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16962.3prime Sequence

618 bp (618 high quality bases) assembled on 2007-05-15

> BS16962.3prime
ATGGTCTAGAAAGCTTTTAGATCTCGTAGTTGCGGAACTTGTTGGCCACA
TCGGTGTTCTCGCCGCCCCACTCGCCCTTGCGACTCCCGTAGTACAAGGC
CGCCCCGCCCTCCGAGGCCCGCCGGTGGGCGGGATTGGGGGATGCTGCGG
TCAGGCCACCGCTGCTGCATCCTGCACCGGTTCCAGGTCCCTGGGCAGCT
GCTCCACCGGTCTCGGGCAGCATGCGATCCTTGGTCTTGGGTGTTACCCA
GTGCATGGACTCTTTATCCACTTTCTCGGCAATCGTGTATCTTCTCACCT
GACCGACATGCTCCTTCATGCCCAGCCACTGTTTGTAGCTCATCGAGATG
CCGCTGTTGCGCCACTTGTCGTAGATGGCCCTCTTTTCGGGATCGCACAA
GGTTTCCTTGGCCTCCTTTAACTGCTGGAACTTGGCCTCCGCCTCCTTGT
CGCCGGAGTTCTTGTCGGGATGGTACTGAAGGGCCAGGACTTTGTACTCG
GCCTGGATCTGCTCGGGCGATGAGTTCTCATCGCAATGGAGCAGACCGTA
GAAGTCCTCGTTGGGACTGCGCTTGTAATTGATTATAGCATCAACGGCGC
TCATGTCGACTGATAACT

BS16962.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG2239-PA 588 jdp-RA 1..588 604..17 2940 100 Minus
CG2239-PC 513 jdp-RC 1..345 604..260 1725 100 Minus
CG2239-PB 549 jdp-RB 1..306 604..299 1530 100 Minus
CG2239-PB 549 jdp-RB 305..549 261..17 1225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
jdp-RA 1960 CG2239-RA 101..688 604..17 2940 100 Minus
jdp-RC 663 CG2239-RC 101..445 604..260 1725 100 Minus
jdp-RB 1921 CG2239-RB 101..406 604..299 1530 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30518331..30518575 17..261 1225 100 Plus
3R 32079331 3R 30519608..30519765 260..417 790 100 Plus
3R 32079331 3R 30523227..30523330 415..518 520 100 Plus
3R 32079331 3R 30526243..30526329 518..604 435 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:07:50 has no hits.

BS16962.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:38:07 Download gff for BS16962.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2239-PA 1..588 17..604 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:49:58 Download gff for BS16962.3prime
Subject Subject Range Query Range Percent Splice Strand
jdp-RA 101..691 14..604 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:07:09 Download gff for BS16962.3prime
Subject Subject Range Query Range Percent Splice Strand
jdp-RA 101..691 14..604 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:09 Download gff for BS16962.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30526243..30526329 518..604 100   Plus
3R 30518328..30518573 14..259 99 <- Plus
3R 30519608..30519763 260..415 100 <- Plus
3R 30523228..30523329 416..517 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:49:58 Download gff for BS16962.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26344050..26344295 14..259 99 <- Plus
arm_3R 26345330..26345485 260..415 100 <- Plus
arm_3R 26348950..26349051 416..517 100 <- Plus
arm_3R 26351965..26352051 518..604 100   Plus

BS16962.5prime Sequence

618 bp (618 high quality bases) assembled on 2007-05-15

> BS16962.5prime
GAAGTTATCAGTCGACATGAGCGCCGTTGATGCTATAATCAATTACAAGC
GCAGTCCCAACGAGGACTTCTACGGTCTGCTCCATTGCGATGAGAACTCA
TCGCCCGAGCAGATCCAGGCCGAGTACAAAGTCCTGGCCCTTCAGTACCA
TCCCGACAAGAACTCCGGCGACAAGGAGGCGGAGGCCAAGTTCCAGCAGT
TAAAGGAGGCCAAGGAAACCTTGTGCGATCCCGAAAAGAGGGCCATCTAC
GACAAGTGGCGCAACAGCGGCATCTCGATGAGCTACAAACAGTGGCTGGG
CATGAAGGAGCATGTCGGTCAGGTGAGAAGATACACGATTGCCGAGAAAG
TGGATAAAGAGTCCATGCACTGGGTAACACCCAAGACCAAGGATCGCATG
CTGCCCGAGACCGGTGGAGCAGCTGCCCAGGGACCTGGAACCGGTGCAGG
ATGCAGCAGCGGTGGCCTGACCGCAGCATCCCCCAATCCCGCCCACCGGC
GGGCCTCGGAGGGCGGGGCGGCCTTGTACTACGGGAGTCGCAAGGGCGAG
TGGGGCGGCGAGAACACCGATGTGGCCAACAAGTTCCGCAACTACGAGAT
CTAAAAGCTTTCTAGACC

BS16962.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG2239-PA 588 jdp-RA 1..588 17..604 2940 100 Plus
CG2239-PC 513 jdp-RC 1..345 17..361 1725 100 Plus
CG2239-PB 549 jdp-RB 1..306 17..322 1530 100 Plus
CG2239-PB 549 jdp-RB 305..549 360..604 1225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:03:02
Subject Length Description Subject Range Query Range Score Percent Strand
jdp-RA 1960 CG2239-RA 101..688 17..604 2940 100 Plus
jdp-RC 663 CG2239-RC 101..445 17..361 1725 100 Plus
jdp-RB 1921 CG2239-RB 101..406 17..322 1530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30518331..30518575 604..360 1225 100 Minus
3R 32079331 3R 30519608..30519765 361..204 790 100 Minus
3R 32079331 3R 30523227..30523330 206..103 520 100 Minus
3R 32079331 3R 30526243..30526329 103..17 435 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:02:59 has no hits.

BS16962.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:57 Download gff for BS16962.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2239-PA 1..588 17..604 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:52:38 Download gff for BS16962.5prime
Subject Subject Range Query Range Percent Splice Strand
jdp-RA 101..691 17..607 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:31:27 Download gff for BS16962.5prime
Subject Subject Range Query Range Percent Splice Strand
jdp-RA 101..691 17..607 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:31:27 Download gff for BS16962.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30518328..30518573 362..607 99 <- Minus
3R 30519608..30519763 206..361 100 <- Minus
3R 30523228..30523329 104..205 100 <- Minus
3R 30526243..30526329 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:52:38 Download gff for BS16962.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26344050..26344295 362..607 99 <- Minus
arm_3R 26345330..26345485 206..361 100 <- Minus
arm_3R 26348950..26349051 104..205 100 <- Minus
arm_3R 26351965..26352051 17..103 100   Minus

BS16962.complete Sequence

620 bp assembled on 2007-05-07

GenBank Submission: FJ638219

> BS16962.complete
GAAGTTATCAGTCGACATGAGCGCCGTTGATGCTATAATCAATTACAAGC
GCAGTCCCAACGAGGACTTCTACGGTCTGCTCCATTGCGATGAGAACTCA
TCGCCCGAGCAGATCCAGGCCGAGTACAAAGTCCTGGCCCTTCAGTACCA
TCCCGACAAGAACTCCGGCGACAAGGAGGCGGAGGCCAAGTTCCAGCAGT
TAAAGGAGGCCAAGGAAACCTTGTGCGATCCCGAAAAGAGGGCCATCTAC
GACAAGTGGCGCAACAGCGGCATCTCGATGAGCTACAAACAGTGGCTGGG
CATGAAGGAGCATGTCGGTCAGGTGAGAAGATACACGATTGCCGAGAAAG
TGGATAAAGAGTCCATGCACTGGGTAACACCCAAGACCAAGGATCGCATG
CTGCCCGAGACCGGTGGAGCAGCTGCCCAGGGACCTGGAACCGGTGCAGG
ATGCAGCAGCGGTGGCCTGACCGCAGCATCCCCCAATCCCGCCCACCGGC
GGGCCTCGGAGGGCGGGGCGGCCTTGTACTACGGGAGTCGCAAGGGCGAG
TGGGGCGGCGAGAACACCGATGTGGCCAACAAGTTCCGCAACTACGAGAT
CTAAAAGCTTTCTAGACCAT

BS16962.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
jdp-RA 588 CG2239-PA 1..588 17..604 2940 100 Plus
jdp-RC 513 CG2239-PC 1..345 17..361 1725 100 Plus
jdp-RB 549 CG2239-PB 1..306 17..322 1530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
jdp-RA 1960 CG2239-RA 101..688 17..604 2940 100 Plus
jdp-RC 663 CG2239-RC 101..445 17..361 1725 100 Plus
jdp-RB 1921 CG2239-RB 101..406 17..322 1530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:45:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30518331..30518575 604..360 1225 100 Minus
3R 32079331 3R 30519608..30519765 361..204 790 100 Minus
3R 32079331 3R 30523227..30523330 206..103 520 100 Minus
3R 32079331 3R 30526243..30526329 103..17 435 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:45:56 has no hits.

BS16962.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:18 Download gff for BS16962.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RA 1..588 17..604 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:17 Download gff for BS16962.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RA 103..693 17..607 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:44 Download gff for BS16962.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RA 101..686 17..602 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:15 Download gff for BS16962.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RA 101..686 17..602 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:15 Download gff for BS16962.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30518333..30518573 362..602 100 <- Minus
3R 30519608..30519763 206..361 100 <- Minus
3R 30523228..30523329 104..205 100 <- Minus
3R 30526243..30526329 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:44 Download gff for BS16962.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26344055..26344295 362..602 100 <- Minus
arm_3R 26345330..26345485 206..361 100 <- Minus
arm_3R 26348950..26349051 104..205 100 <- Minus
arm_3R 26351965..26352051 17..103 100   Minus

BS16962.pep Sequence

Translation from 16 to 603

> BS16962.pep
MSAVDAIINYKRSPNEDFYGLLHCDENSSPEQIQAEYKVLALQYHPDKNS
GDKEAEAKFQQLKEAKETLCDPEKRAIYDKWRNSGISMSYKQWLGMKEHV
GQVRRYTIAEKVDKESMHWVTPKTKDRMLPETGGAAAQGPGTGAGCSSGG
LTAASPNPAHRRASEGGAALYYGSRKGEWGGENTDVANKFRNYEI*

BS16962.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
jdp-PA 195 CG2239-PA 1..195 1..195 1047 100 Plus
jdp-PB 182 CG2239-PB 1..182 1..195 959 93.3 Plus
jdp-PC 170 CG2239-PC 1..115 1..115 611 100 Plus
DnaJ-1-PA 334 CG10578-PA 3..72 16..86 152 40.8 Plus
CG7130-PA 128 CG7130-PA 3..72 16..86 145 40.8 Plus