Clone Sequence Records
BS16962.3prime Sequence
618 bp (618 high quality bases) assembled on 2007-05-15
> BS16962.3prime
ATGGTCTAGAAAGCTTTTAGATCTCGTAGTTGCGGAACTTGTTGGCCACA
TCGGTGTTCTCGCCGCCCCACTCGCCCTTGCGACTCCCGTAGTACAAGGC
CGCCCCGCCCTCCGAGGCCCGCCGGTGGGCGGGATTGGGGGATGCTGCGG
TCAGGCCACCGCTGCTGCATCCTGCACCGGTTCCAGGTCCCTGGGCAGCT
GCTCCACCGGTCTCGGGCAGCATGCGATCCTTGGTCTTGGGTGTTACCCA
GTGCATGGACTCTTTATCCACTTTCTCGGCAATCGTGTATCTTCTCACCT
GACCGACATGCTCCTTCATGCCCAGCCACTGTTTGTAGCTCATCGAGATG
CCGCTGTTGCGCCACTTGTCGTAGATGGCCCTCTTTTCGGGATCGCACAA
GGTTTCCTTGGCCTCCTTTAACTGCTGGAACTTGGCCTCCGCCTCCTTGT
CGCCGGAGTTCTTGTCGGGATGGTACTGAAGGGCCAGGACTTTGTACTCG
GCCTGGATCTGCTCGGGCGATGAGTTCTCATCGCAATGGAGCAGACCGTA
GAAGTCCTCGTTGGGACTGCGCTTGTAATTGATTATAGCATCAACGGCGC
TCATGTCGACTGATAACT
BS16962.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:38:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2239-PA | 588 | jdp-RA | 1..588 | 604..17 | 2940 | 100 | Minus |
CG2239-PC | 513 | jdp-RC | 1..345 | 604..260 | 1725 | 100 | Minus |
CG2239-PB | 549 | jdp-RB | 1..306 | 604..299 | 1530 | 100 | Minus |
CG2239-PB | 549 | jdp-RB | 305..549 | 261..17 | 1225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:07:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jdp-RA | 1960 | CG2239-RA | 101..688 | 604..17 | 2940 | 100 | Minus |
jdp-RC | 663 | CG2239-RC | 101..445 | 604..260 | 1725 | 100 | Minus |
jdp-RB | 1921 | CG2239-RB | 101..406 | 604..299 | 1530 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:07:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30518331..30518575 | 17..261 | 1225 | 100 | Plus |
3R | 32079331 | 3R | 30519608..30519765 | 260..417 | 790 | 100 | Plus |
3R | 32079331 | 3R | 30523227..30523330 | 415..518 | 520 | 100 | Plus |
3R | 32079331 | 3R | 30526243..30526329 | 518..604 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:07:50 has no hits.
BS16962.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:38:07 Download gff for
BS16962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2239-PA | 1..588 | 17..604 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:49:58 Download gff for
BS16962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RA | 101..691 | 14..604 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:07:09 Download gff for
BS16962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RA | 101..691 | 14..604 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:09 Download gff for
BS16962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30526243..30526329 | 518..604 | 100 | | Plus |
3R | 30518328..30518573 | 14..259 | 99 | <- | Plus |
3R | 30519608..30519763 | 260..415 | 100 | <- | Plus |
3R | 30523228..30523329 | 416..517 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:49:58 Download gff for
BS16962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26344050..26344295 | 14..259 | 99 | <- | Plus |
arm_3R | 26345330..26345485 | 260..415 | 100 | <- | Plus |
arm_3R | 26348950..26349051 | 416..517 | 100 | <- | Plus |
arm_3R | 26351965..26352051 | 518..604 | 100 | | Plus |
BS16962.5prime Sequence
618 bp (618 high quality bases) assembled on 2007-05-15
> BS16962.5prime
GAAGTTATCAGTCGACATGAGCGCCGTTGATGCTATAATCAATTACAAGC
GCAGTCCCAACGAGGACTTCTACGGTCTGCTCCATTGCGATGAGAACTCA
TCGCCCGAGCAGATCCAGGCCGAGTACAAAGTCCTGGCCCTTCAGTACCA
TCCCGACAAGAACTCCGGCGACAAGGAGGCGGAGGCCAAGTTCCAGCAGT
TAAAGGAGGCCAAGGAAACCTTGTGCGATCCCGAAAAGAGGGCCATCTAC
GACAAGTGGCGCAACAGCGGCATCTCGATGAGCTACAAACAGTGGCTGGG
CATGAAGGAGCATGTCGGTCAGGTGAGAAGATACACGATTGCCGAGAAAG
TGGATAAAGAGTCCATGCACTGGGTAACACCCAAGACCAAGGATCGCATG
CTGCCCGAGACCGGTGGAGCAGCTGCCCAGGGACCTGGAACCGGTGCAGG
ATGCAGCAGCGGTGGCCTGACCGCAGCATCCCCCAATCCCGCCCACCGGC
GGGCCTCGGAGGGCGGGGCGGCCTTGTACTACGGGAGTCGCAAGGGCGAG
TGGGGCGGCGAGAACACCGATGTGGCCAACAAGTTCCGCAACTACGAGAT
CTAAAAGCTTTCTAGACC
BS16962.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2239-PA | 588 | jdp-RA | 1..588 | 17..604 | 2940 | 100 | Plus |
CG2239-PC | 513 | jdp-RC | 1..345 | 17..361 | 1725 | 100 | Plus |
CG2239-PB | 549 | jdp-RB | 1..306 | 17..322 | 1530 | 100 | Plus |
CG2239-PB | 549 | jdp-RB | 305..549 | 360..604 | 1225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:03:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jdp-RA | 1960 | CG2239-RA | 101..688 | 17..604 | 2940 | 100 | Plus |
jdp-RC | 663 | CG2239-RC | 101..445 | 17..361 | 1725 | 100 | Plus |
jdp-RB | 1921 | CG2239-RB | 101..406 | 17..322 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:02:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30518331..30518575 | 604..360 | 1225 | 100 | Minus |
3R | 32079331 | 3R | 30519608..30519765 | 361..204 | 790 | 100 | Minus |
3R | 32079331 | 3R | 30523227..30523330 | 206..103 | 520 | 100 | Minus |
3R | 32079331 | 3R | 30526243..30526329 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:02:59 has no hits.
BS16962.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:31:57 Download gff for
BS16962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2239-PA | 1..588 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:52:38 Download gff for
BS16962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RA | 101..691 | 17..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:31:27 Download gff for
BS16962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RA | 101..691 | 17..607 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:31:27 Download gff for
BS16962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30518328..30518573 | 362..607 | 99 | <- | Minus |
3R | 30519608..30519763 | 206..361 | 100 | <- | Minus |
3R | 30523228..30523329 | 104..205 | 100 | <- | Minus |
3R | 30526243..30526329 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:52:38 Download gff for
BS16962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26344050..26344295 | 362..607 | 99 | <- | Minus |
arm_3R | 26345330..26345485 | 206..361 | 100 | <- | Minus |
arm_3R | 26348950..26349051 | 104..205 | 100 | <- | Minus |
arm_3R | 26351965..26352051 | 17..103 | 100 | | Minus |
BS16962.complete Sequence
620 bp assembled on 2007-05-07
GenBank Submission: FJ638219
> BS16962.complete
GAAGTTATCAGTCGACATGAGCGCCGTTGATGCTATAATCAATTACAAGC
GCAGTCCCAACGAGGACTTCTACGGTCTGCTCCATTGCGATGAGAACTCA
TCGCCCGAGCAGATCCAGGCCGAGTACAAAGTCCTGGCCCTTCAGTACCA
TCCCGACAAGAACTCCGGCGACAAGGAGGCGGAGGCCAAGTTCCAGCAGT
TAAAGGAGGCCAAGGAAACCTTGTGCGATCCCGAAAAGAGGGCCATCTAC
GACAAGTGGCGCAACAGCGGCATCTCGATGAGCTACAAACAGTGGCTGGG
CATGAAGGAGCATGTCGGTCAGGTGAGAAGATACACGATTGCCGAGAAAG
TGGATAAAGAGTCCATGCACTGGGTAACACCCAAGACCAAGGATCGCATG
CTGCCCGAGACCGGTGGAGCAGCTGCCCAGGGACCTGGAACCGGTGCAGG
ATGCAGCAGCGGTGGCCTGACCGCAGCATCCCCCAATCCCGCCCACCGGC
GGGCCTCGGAGGGCGGGGCGGCCTTGTACTACGGGAGTCGCAAGGGCGAG
TGGGGCGGCGAGAACACCGATGTGGCCAACAAGTTCCGCAACTACGAGAT
CTAAAAGCTTTCTAGACCAT
BS16962.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:45:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jdp-RA | 588 | CG2239-PA | 1..588 | 17..604 | 2940 | 100 | Plus |
jdp-RC | 513 | CG2239-PC | 1..345 | 17..361 | 1725 | 100 | Plus |
jdp-RB | 549 | CG2239-PB | 1..306 | 17..322 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:45:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jdp-RA | 1960 | CG2239-RA | 101..688 | 17..604 | 2940 | 100 | Plus |
jdp-RC | 663 | CG2239-RC | 101..445 | 17..361 | 1725 | 100 | Plus |
jdp-RB | 1921 | CG2239-RB | 101..406 | 17..322 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:45:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30518331..30518575 | 604..360 | 1225 | 100 | Minus |
3R | 32079331 | 3R | 30519608..30519765 | 361..204 | 790 | 100 | Minus |
3R | 32079331 | 3R | 30523227..30523330 | 206..103 | 520 | 100 | Minus |
3R | 32079331 | 3R | 30526243..30526329 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:45:56 has no hits.
BS16962.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:18 Download gff for
BS16962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RA | 1..588 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:17 Download gff for
BS16962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RA | 103..693 | 17..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:44 Download gff for
BS16962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RA | 101..686 | 17..602 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:15 Download gff for
BS16962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RA | 101..686 | 17..602 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:15 Download gff for
BS16962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30518333..30518573 | 362..602 | 100 | <- | Minus |
3R | 30519608..30519763 | 206..361 | 100 | <- | Minus |
3R | 30523228..30523329 | 104..205 | 100 | <- | Minus |
3R | 30526243..30526329 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:44 Download gff for
BS16962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26344055..26344295 | 362..602 | 100 | <- | Minus |
arm_3R | 26345330..26345485 | 206..361 | 100 | <- | Minus |
arm_3R | 26348950..26349051 | 104..205 | 100 | <- | Minus |
arm_3R | 26351965..26352051 | 17..103 | 100 | | Minus |
BS16962.pep Sequence
Translation from 16 to 603
> BS16962.pep
MSAVDAIINYKRSPNEDFYGLLHCDENSSPEQIQAEYKVLALQYHPDKNS
GDKEAEAKFQQLKEAKETLCDPEKRAIYDKWRNSGISMSYKQWLGMKEHV
GQVRRYTIAEKVDKESMHWVTPKTKDRMLPETGGAAAQGPGTGAGCSSGG
LTAASPNPAHRRASEGGAALYYGSRKGEWGGENTDVANKFRNYEI*
BS16962.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jdp-PA | 195 | CG2239-PA | 1..195 | 1..195 | 1047 | 100 | Plus |
jdp-PB | 182 | CG2239-PB | 1..182 | 1..195 | 959 | 93.3 | Plus |
jdp-PC | 170 | CG2239-PC | 1..115 | 1..115 | 611 | 100 | Plus |
DnaJ-1-PA | 334 | CG10578-PA | 3..72 | 16..86 | 152 | 40.8 | Plus |
CG7130-PA | 128 | CG7130-PA | 3..72 | 16..86 | 145 | 40.8 | Plus |