Clone Sequence Records
BS16964.3prime Sequence
833 bp (706 high quality bases) assembled on 2007-05-15
> BS16964.3prime
ATGGTCTAGAAAGCTTTTACGCATGTGAAATCGAGTGCTGGCTGCCGTGC
TTGCCCAAAATGGGCTGATCAGGAGACAGATCTTCCGGTGGGCTACCATT
GTGCGTGTCCGGTGAGTGGTCGTCCAGCAGCTTGCTACCATTGTGCTTGT
TCAGTTCTTTCAGCTCGACAGGTGTGGTCTTTTCGAATGTTGGCGGGATT
AGTAATCGATTGCTGCACTGTAGCCAAAACATGGAGACCAGCATCATGGC
CGAAGTAACGCCGAAGGTCCAGAACGTACCTAGGCGCGTGTAGATGGATC
CCACGAAGACTGGACCAAGGACGCGGGACAGACAACCCGAACCGGTCATC
CAGCCCATCCAGACGCCCTGCGGCCGAGGTCCCAGAACTTTGGAGAATAT
GGTCTGGATGAGAGTCACCCCAATGGGATATCCTATCGATGTGAAGGCAA
ATCCAATGATGAACTGCGTTAAGGTCAAGGCCGGCAGTTCGCCGCACCAT
TTCTGCGTTGTGGGGCAGCCCAAGAAGATGGGATCGCTTTCGCTTAGGTT
CCAGCTGGCATTGAATGGCTGCGCCAACTTTGGCGGATCCGGACCCCAAG
GCACGAAGAGCACGCGACCGAGAAACATCAGCGAGAATCCGCCCCAGATG
AGCACATAACGCTCGGCTATAATCTTGCACATGGGCTCAATCAAAACGAA
CGTGACCAGGGAGACAATAGCTGCGGTGGTCATCATGATGCCCATGTACC
ATAGGGCCTCGTCGTTGGACCAAGCGAACATATCCATTGTCAGGGATGTG
CCCAGAGTCTCCAACAGCACAAAGTTGAATACC
BS16964.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:41:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8596-PA | 1641 | CG8596-RA | 825..1641 | 833..17 | 4085 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:48:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8596-RC | 2114 | CG8596-RC | 1204..2020 | 833..17 | 4085 | 100 | Minus |
CG8596-RB | 1821 | CG8596-RB | 911..1727 | 833..17 | 4085 | 100 | Minus |
CG8596-RA | 1875 | CG8596-RA | 965..1781 | 833..17 | 4085 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:48:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7342236..7342832 | 210..806 | 2985 | 100 | Plus |
3L | 28110227 | 3L | 7341978..7342170 | 17..209 | 965 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:48:14 has no hits.
BS16964.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:41:20 Download gff for
BS16964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8596-PA | 825..1641 | 17..833 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:54 Download gff for
BS16964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8596-RA | 965..1781 | 17..833 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:44:32 Download gff for
BS16964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8596-RA | 965..1781 | 17..833 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:44:32 Download gff for
BS16964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7341978..7342170 | 17..209 | 100 | <- | Plus |
3L | 7342236..7342832 | 210..806 | 100 | <- | Plus |
3L | 7342892..7342918 | 807..833 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:54 Download gff for
BS16964.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7335078..7335270 | 17..209 | 100 | <- | Plus |
arm_3L | 7335336..7335932 | 210..806 | 100 | <- | Plus |
arm_3L | 7335992..7336018 | 807..833 | 100 | | Plus |
BS16964.5prime Sequence
856 bp (855 high quality bases) assembled on 2007-05-15
> BS16964.5prime
GAAGTTATCAGTCGACATGGAGTTTGCCCGCCGAGTTTCCGCTCGCTTTG
AAACCAAAAGACTGCCGGAGGATGTGGACGATGGCCTGGAGACGCTGGAG
GAGTACAAGCAGCGCTGGCGCTCCGTCCGCATCATCTACTTTACGATGTT
TCTGATGGCGCTTGGCTTCAGCATCATACTCACAGGCATTTGGCCCTACC
TCAACAAGCTAGATCCCGATGCGGGCAAGGAGTTTATGGGACTGATTGTG
GCCGCCAATCCGCTGGGACAAATGATCTTCAGTCCGATCTTTGGGTGGTG
GGGCAACAAGCTGGGCAAGATTCGTCTGCCACTGCTGCTATCGCTGTCTC
TATTCACGCTGGCCAGTGGCATATACTCCTCGCTGGAACTGCGTCCGGAC
AATGTGAAGTACTGGATGCTCTCCTCGCGGTTCCTCATCGGTGTCAGCTC
GGCGAATATTGCCCTGTGCCGCTCCTATTTGTCCGCTGCGACACGAATCA
GCGAACGCACACATGCCGTTGCAATGGTTTCGCTGGCACAGGTCCTTGGA
TTCATCATTGGTCCAACTCTGCAGGCGGCAGTCACACCGCTGGGAGATCA
GGGACACGTCTGGCTGTGGGGCAAGATGCACTTCAACATGTACACGGCAT
CCGGATGGATCAATGTGCTGATGAGCATTGGAAACTTCATGATGTTCCTG
CCCGGAGTGTTTGAGGAGCACAAAATTGCAGCTCGCGAGGTGATGGTGAT
GCAGGGCGGCACATCCGAGAAGGAGACTTGGAAAGGCATCAAGCCCAGCT
ATTTATCCGCATGGACTTTGATCGTCGCCTTCTTTGTTCTGGTATTCAAC
TTTGTG
BS16964.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:34:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8596-PA | 1641 | CG8596-RA | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:57:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8596-RC | 2114 | CG8596-RC | 380..1219 | 17..856 | 4200 | 100 | Plus |
CG8596-RB | 1821 | CG8596-RB | 87..926 | 17..856 | 4200 | 100 | Plus |
CG8596-RA | 1875 | CG8596-RA | 141..980 | 17..856 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:57:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7343103..7343612 | 716..207 | 2550 | 100 | Minus |
3L | 28110227 | 3L | 7343668..7343859 | 208..17 | 960 | 100 | Minus |
3L | 28110227 | 3L | 7342903..7343045 | 856..714 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 11:57:38 has no hits.
BS16964.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:34:46 Download gff for
BS16964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8596-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:47:37 Download gff for
BS16964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8596-RA | 141..980 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:19:57 Download gff for
BS16964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8596-RA | 141..980 | 17..856 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:19:57 Download gff for
BS16964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7342903..7343043 | 716..856 | 100 | <- | Minus |
3L | 7343104..7343610 | 209..715 | 100 | <- | Minus |
3L | 7343668..7343859 | 17..208 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:47:37 Download gff for
BS16964.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7336003..7336143 | 716..856 | 100 | <- | Minus |
arm_3L | 7336204..7336710 | 209..715 | 100 | <- | Minus |
arm_3L | 7336768..7336959 | 17..208 | 100 | | Minus |
BS16964.complete Sequence
1673 bp assembled on 2007-05-07
GenBank Submission: FJ638220
> BS16964.complete
GAAGTTATCAGTCGACATGGAGTTTGCCCGCCGAGTTTCCGCTCGCTTTG
AAACCAAAAGACTGCCGGAGGATGTGGACGATGGCCTGGAGACGCTGGAG
GAGTACAAGCAGCGCTGGCGCTCCGTCCGCATCATCTACTTTACGATGTT
TCTGATGGCGCTTGGCTTCAGCATCATACTCACAGGCATTTGGCCCTACC
TCAACAAGCTAGATCCCGATGCGGGCAAGGAGTTTATGGGACTGATTGTG
GCCGCCAATCCGCTGGGACAAATGATCTTCAGTCCGATCTTTGGGTGGTG
GGGCAACAAGCTGGGCAAGATTCGTCTGCCACTGCTGCTATCGCTGTCTC
TATTCACGCTGGCCAGTGGCATATACTCCTCGCTGGAACTGCGTCCGGAC
AATGTGAAGTACTGGATGCTCTCCTCGCGGTTCCTCATCGGTGTCAGCTC
GGCGAATATTGCCCTGTGCCGCTCCTATTTGTCCGCTGCGACACGAATCA
GCGAACGCACACATGCCGTTGCAATGGTTTCGCTGGCACAGGTCCTTGGA
TTCATCATTGGTCCAACTCTGCAGGCGGCAGTCACACCGCTGGGAGATCA
GGGACACGTCTGGCTGTGGGGCAAGATGCACTTCAACATGTACACGGCAT
CCGGATGGATCAATGTGCTGATGAGCATTGGAAACTTCATGATGTTCCTG
CCCGGAGTGTTTGAGGAGCACAAAATTGCAGCTCGCGAGGTGATGGTGAT
GCAGGGCGGCACATCCGAGAAGGAGACTTGGAAAGGCATCAAGCCCAGCT
ATTTATCCGCATGGACTTTGATCGTCGCCTTCTTTGTTCTGGTATTCAAC
TTTGTGCTGTTGGAGACTCTGGGCACATCCCTGACAATGGATATGTTCGC
TTGGTCCAACGACGAGGCCCTATGGTACATGGGCATCATGATGACCACCG
CAGCTATTGTCTCCCTGGTCACGTTCGTTTTGATTGAGCCCATGTGCAAG
ATTATAGCCGAGCGTTATGTGCTCATCTGGGGCGGATTCTCGCTGATGTT
TCTCGGTCGCGTGCTCTTCGTGCCTTGGGGTCCGGATCCGCCAAAGTTGG
CGCAGCCATTCAATGCCAGCTGGAACCTAAGCGAAAGCGATCCCATCTTC
TTGGGCTGCCCCACAACGCAGAAATGGTGCGGCGAACTGCCGGCCTTGAC
CTTAACGCAGTTCATCATTGGATTTGCCTTCACATCGATAGGATATCCCA
TTGGGGTGACTCTCATCCAGACCATATTCTCCAAAGTTCTGGGACCTCGG
CCGCAGGGCGTCTGGATGGGCTGGATGACCGGTTCGGGTTGTCTGTCCCG
CGTCCTTGGTCCAGTCTTCGTGGGATCCATCTACACGCGCCTAGGTACGT
TCTGGACCTTCGGCGTTACTTCGGCCATGATGCTGGTCTCCATGTTTTGG
CTACAGTGCAGCAATCGATTACTAATCCCGCCAACATTCGAAAAGACCAC
ACCTGTCGAGCTGAAAGAACTGAACAAGCACAATGGTAGCAAGCTGCTGG
ACGACCACTCACCGGACACGCACAATGGTAGCCCACCGGAAGATCTGTCT
CCTGATCAGCCCATTTTGGGCAAGCACGGCAGCCAGCACTCGATTTCACA
TGCGTAAAAGCTTTCTAGACCAT
BS16964.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:01:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8596-RC | 1641 | CG8596-PC | 1..1641 | 17..1657 | 8205 | 100 | Plus |
CG8596-RB | 1641 | CG8596-PB | 1..1641 | 17..1657 | 8205 | 100 | Plus |
CG8596-RA | 1641 | CG8596-PA | 1..1641 | 17..1657 | 8205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:01:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8596-RC | 2114 | CG8596-RC | 380..2020 | 17..1657 | 8205 | 100 | Plus |
CG8596-RB | 1821 | CG8596-RB | 87..1727 | 17..1657 | 8205 | 100 | Plus |
CG8596-RA | 1875 | CG8596-RA | 141..1781 | 17..1657 | 8205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:01:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7342236..7342832 | 1464..868 | 2985 | 100 | Minus |
3L | 28110227 | 3L | 7343103..7343612 | 716..207 | 2550 | 100 | Minus |
3L | 28110227 | 3L | 7341978..7342170 | 1657..1465 | 965 | 100 | Minus |
3L | 28110227 | 3L | 7343668..7343859 | 208..17 | 960 | 100 | Minus |
3L | 28110227 | 3L | 7342892..7343045 | 867..714 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:01:17 has no hits.
BS16964.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:20 Download gff for
BS16964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8596-RA | 1..1641 | 17..1657 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:19 Download gff for
BS16964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8596-RA | 139..1779 | 17..1657 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:38:20 Download gff for
BS16964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8596-RA | 141..1779 | 17..1655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:20 Download gff for
BS16964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8596-RA | 139..1779 | 17..1657 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:09 Download gff for
BS16964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8596-RA | 141..1779 | 17..1655 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:09 Download gff for
BS16964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7341980..7342170 | 1465..1655 | 100 | <- | Minus |
3L | 7342236..7342832 | 868..1464 | 100 | <- | Minus |
3L | 7342892..7343043 | 716..867 | 100 | <- | Minus |
3L | 7343104..7343610 | 209..715 | 100 | <- | Minus |
3L | 7343668..7343859 | 17..208 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:38:20 Download gff for
BS16964.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7335080..7335270 | 1465..1655 | 100 | <- | Minus |
arm_3L | 7335336..7335932 | 868..1464 | 100 | <- | Minus |
arm_3L | 7335992..7336143 | 716..867 | 100 | <- | Minus |
arm_3L | 7336204..7336710 | 209..715 | 100 | <- | Minus |
arm_3L | 7336768..7336959 | 17..208 | 100 | | Minus |
BS16964.pep Sequence
Translation from 16 to 1656
> BS16964.pep
MEFARRVSARFETKRLPEDVDDGLETLEEYKQRWRSVRIIYFTMFLMALG
FSIILTGIWPYLNKLDPDAGKEFMGLIVAANPLGQMIFSPIFGWWGNKLG
KIRLPLLLSLSLFTLASGIYSSLELRPDNVKYWMLSSRFLIGVSSANIAL
CRSYLSAATRISERTHAVAMVSLAQVLGFIIGPTLQAAVTPLGDQGHVWL
WGKMHFNMYTASGWINVLMSIGNFMMFLPGVFEEHKIAAREVMVMQGGTS
EKETWKGIKPSYLSAWTLIVAFFVLVFNFVLLETLGTSLTMDMFAWSNDE
ALWYMGIMMTTAAIVSLVTFVLIEPMCKIIAERYVLIWGGFSLMFLGRVL
FVPWGPDPPKLAQPFNASWNLSESDPIFLGCPTTQKWCGELPALTLTQFI
IGFAFTSIGYPIGVTLIQTIFSKVLGPRPQGVWMGWMTGSGCLSRVLGPV
FVGSIYTRLGTFWTFGVTSAMMLVSMFWLQCSNRLLIPPTFEKTTPVELK
ELNKHNGSKLLDDHSPDTHNGSPPEDLSPDQPILGKHGSQHSISHA*
BS16964.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8596-PC | 546 | CG8596-PC | 1..546 | 1..546 | 2892 | 100 | Plus |
CG8596-PB | 546 | CG8596-PB | 1..546 | 1..546 | 2892 | 100 | Plus |
CG8596-PA | 546 | CG8596-PA | 1..546 | 1..546 | 2892 | 100 | Plus |