Clone BS16964 Report

Search the DGRC for BS16964

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:169
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG8596-RA
Protein status:BS16964.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16964.3prime Sequence

833 bp (706 high quality bases) assembled on 2007-05-15

> BS16964.3prime
ATGGTCTAGAAAGCTTTTACGCATGTGAAATCGAGTGCTGGCTGCCGTGC
TTGCCCAAAATGGGCTGATCAGGAGACAGATCTTCCGGTGGGCTACCATT
GTGCGTGTCCGGTGAGTGGTCGTCCAGCAGCTTGCTACCATTGTGCTTGT
TCAGTTCTTTCAGCTCGACAGGTGTGGTCTTTTCGAATGTTGGCGGGATT
AGTAATCGATTGCTGCACTGTAGCCAAAACATGGAGACCAGCATCATGGC
CGAAGTAACGCCGAAGGTCCAGAACGTACCTAGGCGCGTGTAGATGGATC
CCACGAAGACTGGACCAAGGACGCGGGACAGACAACCCGAACCGGTCATC
CAGCCCATCCAGACGCCCTGCGGCCGAGGTCCCAGAACTTTGGAGAATAT
GGTCTGGATGAGAGTCACCCCAATGGGATATCCTATCGATGTGAAGGCAA
ATCCAATGATGAACTGCGTTAAGGTCAAGGCCGGCAGTTCGCCGCACCAT
TTCTGCGTTGTGGGGCAGCCCAAGAAGATGGGATCGCTTTCGCTTAGGTT
CCAGCTGGCATTGAATGGCTGCGCCAACTTTGGCGGATCCGGACCCCAAG
GCACGAAGAGCACGCGACCGAGAAACATCAGCGAGAATCCGCCCCAGATG
AGCACATAACGCTCGGCTATAATCTTGCACATGGGCTCAATCAAAACGAA
CGTGACCAGGGAGACAATAGCTGCGGTGGTCATCATGATGCCCATGTACC
ATAGGGCCTCGTCGTTGGACCAAGCGAACATATCCATTGTCAGGGATGTG
CCCAGAGTCTCCAACAGCACAAAGTTGAATACC

BS16964.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8596-PA 1641 CG8596-RA 825..1641 833..17 4085 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8596-RC 2114 CG8596-RC 1204..2020 833..17 4085 100 Minus
CG8596-RB 1821 CG8596-RB 911..1727 833..17 4085 100 Minus
CG8596-RA 1875 CG8596-RA 965..1781 833..17 4085 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7342236..7342832 210..806 2985 100 Plus
3L 28110227 3L 7341978..7342170 17..209 965 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:48:14 has no hits.

BS16964.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:41:20 Download gff for BS16964.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8596-PA 825..1641 17..833 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:54 Download gff for BS16964.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8596-RA 965..1781 17..833 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:44:32 Download gff for BS16964.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8596-RA 965..1781 17..833 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:44:32 Download gff for BS16964.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7341978..7342170 17..209 100 <- Plus
3L 7342236..7342832 210..806 100 <- Plus
3L 7342892..7342918 807..833 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:54 Download gff for BS16964.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7335078..7335270 17..209 100 <- Plus
arm_3L 7335336..7335932 210..806 100 <- Plus
arm_3L 7335992..7336018 807..833 100   Plus

BS16964.5prime Sequence

856 bp (855 high quality bases) assembled on 2007-05-15

> BS16964.5prime
GAAGTTATCAGTCGACATGGAGTTTGCCCGCCGAGTTTCCGCTCGCTTTG
AAACCAAAAGACTGCCGGAGGATGTGGACGATGGCCTGGAGACGCTGGAG
GAGTACAAGCAGCGCTGGCGCTCCGTCCGCATCATCTACTTTACGATGTT
TCTGATGGCGCTTGGCTTCAGCATCATACTCACAGGCATTTGGCCCTACC
TCAACAAGCTAGATCCCGATGCGGGCAAGGAGTTTATGGGACTGATTGTG
GCCGCCAATCCGCTGGGACAAATGATCTTCAGTCCGATCTTTGGGTGGTG
GGGCAACAAGCTGGGCAAGATTCGTCTGCCACTGCTGCTATCGCTGTCTC
TATTCACGCTGGCCAGTGGCATATACTCCTCGCTGGAACTGCGTCCGGAC
AATGTGAAGTACTGGATGCTCTCCTCGCGGTTCCTCATCGGTGTCAGCTC
GGCGAATATTGCCCTGTGCCGCTCCTATTTGTCCGCTGCGACACGAATCA
GCGAACGCACACATGCCGTTGCAATGGTTTCGCTGGCACAGGTCCTTGGA
TTCATCATTGGTCCAACTCTGCAGGCGGCAGTCACACCGCTGGGAGATCA
GGGACACGTCTGGCTGTGGGGCAAGATGCACTTCAACATGTACACGGCAT
CCGGATGGATCAATGTGCTGATGAGCATTGGAAACTTCATGATGTTCCTG
CCCGGAGTGTTTGAGGAGCACAAAATTGCAGCTCGCGAGGTGATGGTGAT
GCAGGGCGGCACATCCGAGAAGGAGACTTGGAAAGGCATCAAGCCCAGCT
ATTTATCCGCATGGACTTTGATCGTCGCCTTCTTTGTTCTGGTATTCAAC
TTTGTG

BS16964.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG8596-PA 1641 CG8596-RA 1..840 17..856 4200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG8596-RC 2114 CG8596-RC 380..1219 17..856 4200 100 Plus
CG8596-RB 1821 CG8596-RB 87..926 17..856 4200 100 Plus
CG8596-RA 1875 CG8596-RA 141..980 17..856 4200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7343103..7343612 716..207 2550 100 Minus
3L 28110227 3L 7343668..7343859 208..17 960 100 Minus
3L 28110227 3L 7342903..7343045 856..714 715 100 Minus
Blast to na_te.dros performed on 2015-02-13 11:57:38 has no hits.

BS16964.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:34:46 Download gff for BS16964.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8596-PA 1..840 17..856 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:47:37 Download gff for BS16964.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8596-RA 141..980 17..856 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:19:57 Download gff for BS16964.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8596-RA 141..980 17..856 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:19:57 Download gff for BS16964.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7342903..7343043 716..856 100 <- Minus
3L 7343104..7343610 209..715 100 <- Minus
3L 7343668..7343859 17..208 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:47:37 Download gff for BS16964.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7336003..7336143 716..856 100 <- Minus
arm_3L 7336204..7336710 209..715 100 <- Minus
arm_3L 7336768..7336959 17..208 100   Minus

BS16964.complete Sequence

1673 bp assembled on 2007-05-07

GenBank Submission: FJ638220

> BS16964.complete
GAAGTTATCAGTCGACATGGAGTTTGCCCGCCGAGTTTCCGCTCGCTTTG
AAACCAAAAGACTGCCGGAGGATGTGGACGATGGCCTGGAGACGCTGGAG
GAGTACAAGCAGCGCTGGCGCTCCGTCCGCATCATCTACTTTACGATGTT
TCTGATGGCGCTTGGCTTCAGCATCATACTCACAGGCATTTGGCCCTACC
TCAACAAGCTAGATCCCGATGCGGGCAAGGAGTTTATGGGACTGATTGTG
GCCGCCAATCCGCTGGGACAAATGATCTTCAGTCCGATCTTTGGGTGGTG
GGGCAACAAGCTGGGCAAGATTCGTCTGCCACTGCTGCTATCGCTGTCTC
TATTCACGCTGGCCAGTGGCATATACTCCTCGCTGGAACTGCGTCCGGAC
AATGTGAAGTACTGGATGCTCTCCTCGCGGTTCCTCATCGGTGTCAGCTC
GGCGAATATTGCCCTGTGCCGCTCCTATTTGTCCGCTGCGACACGAATCA
GCGAACGCACACATGCCGTTGCAATGGTTTCGCTGGCACAGGTCCTTGGA
TTCATCATTGGTCCAACTCTGCAGGCGGCAGTCACACCGCTGGGAGATCA
GGGACACGTCTGGCTGTGGGGCAAGATGCACTTCAACATGTACACGGCAT
CCGGATGGATCAATGTGCTGATGAGCATTGGAAACTTCATGATGTTCCTG
CCCGGAGTGTTTGAGGAGCACAAAATTGCAGCTCGCGAGGTGATGGTGAT
GCAGGGCGGCACATCCGAGAAGGAGACTTGGAAAGGCATCAAGCCCAGCT
ATTTATCCGCATGGACTTTGATCGTCGCCTTCTTTGTTCTGGTATTCAAC
TTTGTGCTGTTGGAGACTCTGGGCACATCCCTGACAATGGATATGTTCGC
TTGGTCCAACGACGAGGCCCTATGGTACATGGGCATCATGATGACCACCG
CAGCTATTGTCTCCCTGGTCACGTTCGTTTTGATTGAGCCCATGTGCAAG
ATTATAGCCGAGCGTTATGTGCTCATCTGGGGCGGATTCTCGCTGATGTT
TCTCGGTCGCGTGCTCTTCGTGCCTTGGGGTCCGGATCCGCCAAAGTTGG
CGCAGCCATTCAATGCCAGCTGGAACCTAAGCGAAAGCGATCCCATCTTC
TTGGGCTGCCCCACAACGCAGAAATGGTGCGGCGAACTGCCGGCCTTGAC
CTTAACGCAGTTCATCATTGGATTTGCCTTCACATCGATAGGATATCCCA
TTGGGGTGACTCTCATCCAGACCATATTCTCCAAAGTTCTGGGACCTCGG
CCGCAGGGCGTCTGGATGGGCTGGATGACCGGTTCGGGTTGTCTGTCCCG
CGTCCTTGGTCCAGTCTTCGTGGGATCCATCTACACGCGCCTAGGTACGT
TCTGGACCTTCGGCGTTACTTCGGCCATGATGCTGGTCTCCATGTTTTGG
CTACAGTGCAGCAATCGATTACTAATCCCGCCAACATTCGAAAAGACCAC
ACCTGTCGAGCTGAAAGAACTGAACAAGCACAATGGTAGCAAGCTGCTGG
ACGACCACTCACCGGACACGCACAATGGTAGCCCACCGGAAGATCTGTCT
CCTGATCAGCCCATTTTGGGCAAGCACGGCAGCCAGCACTCGATTTCACA
TGCGTAAAAGCTTTCTAGACCAT

BS16964.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:01:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8596-RC 1641 CG8596-PC 1..1641 17..1657 8205 100 Plus
CG8596-RB 1641 CG8596-PB 1..1641 17..1657 8205 100 Plus
CG8596-RA 1641 CG8596-PA 1..1641 17..1657 8205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8596-RC 2114 CG8596-RC 380..2020 17..1657 8205 100 Plus
CG8596-RB 1821 CG8596-RB 87..1727 17..1657 8205 100 Plus
CG8596-RA 1875 CG8596-RA 141..1781 17..1657 8205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:01:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7342236..7342832 1464..868 2985 100 Minus
3L 28110227 3L 7343103..7343612 716..207 2550 100 Minus
3L 28110227 3L 7341978..7342170 1657..1465 965 100 Minus
3L 28110227 3L 7343668..7343859 208..17 960 100 Minus
3L 28110227 3L 7342892..7343045 867..714 770 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:01:17 has no hits.

BS16964.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:20 Download gff for BS16964.complete
Subject Subject Range Query Range Percent Splice Strand
CG8596-RA 1..1641 17..1657 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:19 Download gff for BS16964.complete
Subject Subject Range Query Range Percent Splice Strand
CG8596-RA 139..1779 17..1657 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:38:20 Download gff for BS16964.complete
Subject Subject Range Query Range Percent Splice Strand
CG8596-RA 141..1779 17..1655 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:20 Download gff for BS16964.complete
Subject Subject Range Query Range Percent Splice Strand
CG8596-RA 139..1779 17..1657 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:09 Download gff for BS16964.complete
Subject Subject Range Query Range Percent Splice Strand
CG8596-RA 141..1779 17..1655 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:09 Download gff for BS16964.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7341980..7342170 1465..1655 100 <- Minus
3L 7342236..7342832 868..1464 100 <- Minus
3L 7342892..7343043 716..867 100 <- Minus
3L 7343104..7343610 209..715 100 <- Minus
3L 7343668..7343859 17..208 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:38:20 Download gff for BS16964.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7335080..7335270 1465..1655 100 <- Minus
arm_3L 7335336..7335932 868..1464 100 <- Minus
arm_3L 7335992..7336143 716..867 100 <- Minus
arm_3L 7336204..7336710 209..715 100 <- Minus
arm_3L 7336768..7336959 17..208 100   Minus

BS16964.pep Sequence

Translation from 16 to 1656

> BS16964.pep
MEFARRVSARFETKRLPEDVDDGLETLEEYKQRWRSVRIIYFTMFLMALG
FSIILTGIWPYLNKLDPDAGKEFMGLIVAANPLGQMIFSPIFGWWGNKLG
KIRLPLLLSLSLFTLASGIYSSLELRPDNVKYWMLSSRFLIGVSSANIAL
CRSYLSAATRISERTHAVAMVSLAQVLGFIIGPTLQAAVTPLGDQGHVWL
WGKMHFNMYTASGWINVLMSIGNFMMFLPGVFEEHKIAAREVMVMQGGTS
EKETWKGIKPSYLSAWTLIVAFFVLVFNFVLLETLGTSLTMDMFAWSNDE
ALWYMGIMMTTAAIVSLVTFVLIEPMCKIIAERYVLIWGGFSLMFLGRVL
FVPWGPDPPKLAQPFNASWNLSESDPIFLGCPTTQKWCGELPALTLTQFI
IGFAFTSIGYPIGVTLIQTIFSKVLGPRPQGVWMGWMTGSGCLSRVLGPV
FVGSIYTRLGTFWTFGVTSAMMLVSMFWLQCSNRLLIPPTFEKTTPVELK
ELNKHNGSKLLDDHSPDTHNGSPPEDLSPDQPILGKHGSQHSISHA*

BS16964.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG8596-PC 546 CG8596-PC 1..546 1..546 2892 100 Plus
CG8596-PB 546 CG8596-PB 1..546 1..546 2892 100 Plus
CG8596-PA 546 CG8596-PA 1..546 1..546 2892 100 Plus