Clone Sequence Records
BS16968.3prime Sequence
888 bp (755 high quality bases) assembled on 2007-05-15
> BS16968.3prime
ATGGTCTAGAAAGCTTTTATGTGGTCTCGCCCTTGCCGCTGTCATCAGCG
GATTCGGCATCGTCCGCTCCGGCGGCGGCCGCCTCTCTGACCAGCCCGTT
GTTCTTGCACTTGCTGCTGCCTCCATTATTTTTGCTAATCGGCGCCGTGG
CACTGTCCTCATCTTCATCCTCGTCCTCATCATCGTCGTCGTCCTCATCG
AAGTCATCATCAGATGGCAGATCATCCTCCGTCTCCAGATCGAAATCATC
ATCGTAGAAGTTGGCATCCAGGCCAGACTCCGTTGTGGGCTTGCGCGTGG
GCTTCAGGCAGTAGTCCTCCAGGGTCATCGGAACCACAATGCCCTCCCGC
TTGGCCTCGGCATTGGCGGCCAGTGCCTGTTTTCGTATGATGTTTGGATA
CTCATTGTCCTTACCCTGTGAGTCCCGCCATCGGCGGTACATGACCGAGG
CGTCCACGTTGGCCGGCGAGAATGTGTTCGGCTCATTGAGCAGCGATATG
ACCGACAGCAGGATGGTGCGCACATTCTGCGTGGGATTCCAGCGTTCGCA
GGGCAGCTCGCCACTCTGCGGATCATCCACCGGCGGATGTAGTATGGATA
TGCACAGATCACCGTTCTCGTAAACATTCGGATGCCAGACCTTCGTCAGG
AAGCGTATGGATGGCGGTGAGTATGGATAGTCGTGCGGGAACTTCATGTG
CGCCTTGAAGTAGCCGCCCTGGTAGAGGGTGTCCGGTGGCCCGAAGATTG
CCACCTCCCATTCGAACAGATTGTCGTCGTTGATCAGCTTGACGCGGAAT
CCCTCCCACGGCTCTTCCTGCAGCGACTTGTACTCCATGGCCAGGGCGCG
AACGGCCGAGCTGCTGGGCGTGGTTGTGGGGGCAGCGG
BS16968.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:38:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7656-PC | 1026 | CG7656-RC | 155..1026 | 888..17 | 4310 | 99.7 | Minus |
CG7656-PA | 954 | CG7656-RA | 89..562 | 888..415 | 2320 | 99.5 | Minus |
CG7656-PA | 954 | CG7656-RA | 560..954 | 411..17 | 1975 | 100 | Minus |
CG7656-PB | 810 | CG7656-RB | 416..810 | 411..17 | 1975 | 100 | Minus |
CG7656-PB | 810 | CG7656-RB | 141..418 | 692..415 | 1390 | 100 | Minus |
CG7656-PB | 810 | CG7656-RB | 89..141 | 888..836 | 265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:59:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7656-RE | 1234 | CG7656-RE | 241..1112 | 888..17 | 4330 | 99.8 | Minus |
CG7656-RD | 1410 | CG7656-RD | 391..1262 | 888..17 | 4330 | 99.8 | Minus |
CG7656-RF | 2027 | CG7656-RF | 391..1256 | 888..17 | 4230 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:59:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15587004..15587477 | 415..888 | 2340 | 99.6 | Plus |
3L | 28110227 | 3L | 15586202..15586603 | 17..418 | 2010 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:59:07 has no hits.
BS16968.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:38:15 Download gff for
BS16968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7656-PC | 155..1026 | 17..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:37:33 Download gff for
BS16968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7656-RD | 391..1265 | 13..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:37:45 Download gff for
BS16968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7656-RD | 391..1265 | 13..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:37:45 Download gff for
BS16968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15586199..15586600 | 13..415 | 99 | <- | Plus |
3L | 15587005..15587477 | 416..888 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:37:33 Download gff for
BS16968.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15579299..15579700 | 13..415 | 99 | <- | Plus |
arm_3L | 15580105..15580577 | 416..888 | 99 | | Plus |
BS16968.5prime Sequence
883 bp (737 high quality bases) assembled on 2007-05-15
> BS16968.5prime
GAAGTTATCAGTCGACATGTCTCGGCATTTGGAAAACTTCTTTACCAACA
GAGTACGGCGACAACTGCAAGTGGCTGAACAAATGACCACCGCCGCCTCC
ACATCGCAGCATGCGACATCGTCCTCCACAATGATGGCGGGCTCTGGATC
CTTGGCGACCTCGTCGTCCGCCGCTGCCCCCACAACCACGCCCAGCAGCT
CGGCCGTTCGCGCCCTGGCCATGGAGTACAAGTCGCTGCAGGAAGAGCCG
GTGGAGGGATTCCGCGTCAAGCTGATCAACGACGACAATCTGTTCGAATG
GGAGGTGGCAATCTTCGGGCCACCGGACACCCTCTACCAGGGCGGCTACT
TCAAGGCGCACATGAAGTTCCCGCACGACTATCCATACTCACCGCCATCC
ATACGCTTCCTGACGAAGGTCTGGCATCCGAATGTTTACGAGAACGGTGA
TCTGTGCATATCCATACTACATCCGCCGGTGGATGATCCGCAGAGTGGCG
AGCTGCCCTGCGAACGCTGGAATCCCACGCAGAATGTGCGCACCATCCTG
CTGTCGGTCATATCGCTGCTCAATGAGCCGAACACATTCTCGCCGGCCAA
CGTGGACGCCTCGGTCATGTACCGCCGATGGCGGGACTCACAGGGTAAGG
ACAATGAGTATCCAAACATCATACGAAAACAGGCACTGGCCGCCAATGCC
GAGGCCAAGCGGGAGGGCATTGTGGTTCCGATGACCCTGGAGGACTACTG
CCTGAAGCCCACGCGCAAGCCCACAACGGAGTCTGGCCTGGATGCCAACT
TCTACGATGATGATTTCGATCTGGAGACGGAGGATGATCTGCCATCTGAT
GATGACTTCGATGAGGACGACGACGATGATGAG
BS16968.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:32:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7656-PC | 1026 | CG7656-RC | 1..867 | 17..883 | 4335 | 100 | Plus |
CG7656-PA | 954 | CG7656-RA | 1..562 | 83..644 | 2810 | 100 | Plus |
CG7656-PB | 810 | CG7656-RB | 141..418 | 367..644 | 1390 | 100 | Plus |
CG7656-PA | 954 | CG7656-RA | 560..795 | 648..883 | 1180 | 100 | Plus |
CG7656-PB | 810 | CG7656-RB | 416..651 | 648..883 | 1180 | 100 | Plus |
CG7656-PB | 810 | CG7656-RB | 1..141 | 83..223 | 705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:20:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7656-RD | 1410 | CG7656-RD | 234..1103 | 14..883 | 4350 | 100 | Plus |
CG7656-RF | 2027 | CG7656-RF | 234..1097 | 14..883 | 4250 | 99.3 | Plus |
CG7656-RE | 1234 | CG7656-RE | 118..953 | 48..883 | 4165 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:20:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15587004..15587634 | 644..14 | 3155 | 100 | Minus |
3L | 28110227 | 3L | 15586361..15586603 | 883..641 | 1215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:20:40 has no hits.
BS16968.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:32:01 Download gff for
BS16968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7656-PC | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:49:46 Download gff for
BS16968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7656-RD | 229..1103 | 7..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:37:49 Download gff for
BS16968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7656-RD | 229..1103 | 7..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:37:49 Download gff for
BS16968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15586361..15586600 | 644..883 | 100 | <- | Minus |
3L | 15587005..15587631 | 17..643 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:49:46 Download gff for
BS16968.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15579461..15579700 | 644..883 | 100 | <- | Minus |
arm_3L | 15580105..15580731 | 17..643 | 100 | -> | Minus |
BS16968.complete Sequence
1058 bp assembled on 2007-05-07
GenBank Submission: FJ638221
> BS16968.complete
GAAGTTATCAGTCGACATGTCTCGGCATTTGGAAAACTTCTTTACCAACA
GAGTACGGCGACAACTGCAAGTGGCTGAACAAATGACCACCGCCGCCTCC
ACATCGCAGCATGCGACATCGTCCTCCACAATGATGGCGGGCTCTGGATC
CTTGGCGACCTCGTCGTCCGCCGCTGCCCCCACAACCACGCCCAGCAGCT
CGGCCGTTCGCGCCCTGGCCATGGAGTACAAGTCGCTGCAGGAAGAGCCG
GTGGAGGGATTCCGCGTCAAGCTGATCAACGACGACAATCTGTTCGAATG
GGAGGTGGCAATCTTCGGGCCACCGGACACCCTCTACCAGGGCGGCTACT
TCAAGGCGCACATGAAGTTCCCGCACGACTATCCATACTCACCGCCATCC
ATACGCTTCCTGACGAAGGTCTGGCATCCGAATGTTTACGAGAACGGTGA
TCTGTGCATATCCATACTACATCCGCCGGTGGATGATCCGCAGAGTGGCG
AGCTGCCCTGCGAACGCTGGAATCCCACGCAGAATGTGCGCACCATCCTG
CTGTCGGTCATATCGCTGCTCAATGAGCCGAACACATTCTCGCCGGCCAA
CGTGGACGCCTCGGTCATGTACCGCCGATGGCGGGACTCACAGGGTAAGG
ACAATGAGTATCCAAACATCATACGAAAACAGGCACTGGCCGCCAATGCC
GAGGCCAAGCGGGAGGGCATTGTGGTTCCGATGACCCTGGAGGACTACTG
CCTGAAGCCCACGCGCAAGCCCACAACGGAGTCTGGCCTGGATGCCAACT
TCTACGATGATGATTTCGATCTGGAGACGGAGGATGATCTGCCATCTGAT
GATGACTTCGATGAGGACGACGACGATGATGAGGACGAGGATGAAGATGA
GGACAGTGCCACGGCGCCGATTAGCAAAAATAATGGAGGCAGCAGCAAGT
GCAAGAACAACGGGCTGGTCAGAGAGGCGGCCGCCGCCGGAGCGGACGAT
GCCGAATCCGCTGATGACAGCGGCAAGGGCGAGACCACATAAAAGCTTTC
TAGACCAT
BS16968.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7656-RE | 960 | CG7656-PE | 1..960 | 83..1042 | 4800 | 100 | Plus |
CG7656-RD | 960 | CG7656-PD | 1..960 | 83..1042 | 4800 | 100 | Plus |
CG7656-RF | 954 | CG7656-PF | 1..954 | 83..1042 | 4675 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7656-RD | 1410 | CG7656-RD | 234..1262 | 14..1042 | 5145 | 100 | Plus |
CG7656-RF | 2027 | CG7656-RF | 234..1256 | 14..1042 | 5020 | 99.4 | Plus |
CG7656-RE | 1234 | CG7656-RE | 118..1112 | 48..1042 | 4960 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15587004..15587634 | 644..14 | 3155 | 100 | Minus |
3L | 28110227 | 3L | 15586202..15586603 | 1042..641 | 2010 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:38:04 has no hits.
BS16968.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:21 Download gff for
BS16968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7656-RC | 1..1026 | 17..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:20 Download gff for
BS16968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7656-RD | 27..1063 | 7..1046 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:40 Download gff for
BS16968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7656-RD | 237..1260 | 17..1040 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:21 Download gff for
BS16968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7656-RC | 27..1063 | 7..1046 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:21 Download gff for
BS16968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7656-RD | 237..1260 | 17..1040 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:21 Download gff for
BS16968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15586204..15586600 | 644..1040 | 100 | <- | Minus |
3L | 15587005..15587631 | 17..643 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:40 Download gff for
BS16968.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15579304..15579700 | 644..1040 | 100 | <- | Minus |
arm_3L | 15580105..15580731 | 17..643 | 100 | | Minus |
BS16968.pep Sequence
Translation from 16 to 1041
> BS16968.pep
MSRHLENFFTNRVRRQLQVAEQMTTAASTSQHATSSSTMMAGSGSLATSS
SAAAPTTTPSSSAVRALAMEYKSLQEEPVEGFRVKLINDDNLFEWEVAIF
GPPDTLYQGGYFKAHMKFPHDYPYSPPSIRFLTKVWHPNVYENGDLCISI
LHPPVDDPQSGELPCERWNPTQNVRTILLSVISLLNEPNTFSPANVDASV
MYRRWRDSQGKDNEYPNIIRKQALAANAEAKREGIVVPMTLEDYCLKPTR
KPTTESGLDANFYDDDFDLETEDDLPSDDDFDEDDDDDEDEDEDEDSATA
PISKNNGGSSKCKNNGLVREAAAAGADDAESADDSGKGETT*
BS16968.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7656-PE | 319 | CG7656-PE | 1..319 | 23..341 | 1688 | 100 | Plus |
CG7656-PD | 319 | CG7656-PD | 1..319 | 23..341 | 1688 | 100 | Plus |
CG7656-PF | 317 | CG7656-PF | 1..317 | 23..341 | 1664 | 99.4 | Plus |
CG7656-PA | 317 | CG7656-PA | 1..317 | 23..341 | 1664 | 99.4 | Plus |
CG40045-PA | 168 | CG40045-PA | 10..148 | 67..208 | 433 | 54.2 | Plus |