Clone BS16968 Report

Search the DGRC for BS16968

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:169
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG7656-RD
Protein status:BS16968.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16968.3prime Sequence

888 bp (755 high quality bases) assembled on 2007-05-15

> BS16968.3prime
ATGGTCTAGAAAGCTTTTATGTGGTCTCGCCCTTGCCGCTGTCATCAGCG
GATTCGGCATCGTCCGCTCCGGCGGCGGCCGCCTCTCTGACCAGCCCGTT
GTTCTTGCACTTGCTGCTGCCTCCATTATTTTTGCTAATCGGCGCCGTGG
CACTGTCCTCATCTTCATCCTCGTCCTCATCATCGTCGTCGTCCTCATCG
AAGTCATCATCAGATGGCAGATCATCCTCCGTCTCCAGATCGAAATCATC
ATCGTAGAAGTTGGCATCCAGGCCAGACTCCGTTGTGGGCTTGCGCGTGG
GCTTCAGGCAGTAGTCCTCCAGGGTCATCGGAACCACAATGCCCTCCCGC
TTGGCCTCGGCATTGGCGGCCAGTGCCTGTTTTCGTATGATGTTTGGATA
CTCATTGTCCTTACCCTGTGAGTCCCGCCATCGGCGGTACATGACCGAGG
CGTCCACGTTGGCCGGCGAGAATGTGTTCGGCTCATTGAGCAGCGATATG
ACCGACAGCAGGATGGTGCGCACATTCTGCGTGGGATTCCAGCGTTCGCA
GGGCAGCTCGCCACTCTGCGGATCATCCACCGGCGGATGTAGTATGGATA
TGCACAGATCACCGTTCTCGTAAACATTCGGATGCCAGACCTTCGTCAGG
AAGCGTATGGATGGCGGTGAGTATGGATAGTCGTGCGGGAACTTCATGTG
CGCCTTGAAGTAGCCGCCCTGGTAGAGGGTGTCCGGTGGCCCGAAGATTG
CCACCTCCCATTCGAACAGATTGTCGTCGTTGATCAGCTTGACGCGGAAT
CCCTCCCACGGCTCTTCCTGCAGCGACTTGTACTCCATGGCCAGGGCGCG
AACGGCCGAGCTGCTGGGCGTGGTTGTGGGGGCAGCGG

BS16968.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7656-PC 1026 CG7656-RC 155..1026 888..17 4310 99.7 Minus
CG7656-PA 954 CG7656-RA 89..562 888..415 2320 99.5 Minus
CG7656-PA 954 CG7656-RA 560..954 411..17 1975 100 Minus
CG7656-PB 810 CG7656-RB 416..810 411..17 1975 100 Minus
CG7656-PB 810 CG7656-RB 141..418 692..415 1390 100 Minus
CG7656-PB 810 CG7656-RB 89..141 888..836 265 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7656-RE 1234 CG7656-RE 241..1112 888..17 4330 99.8 Minus
CG7656-RD 1410 CG7656-RD 391..1262 888..17 4330 99.8 Minus
CG7656-RF 2027 CG7656-RF 391..1256 888..17 4230 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15587004..15587477 415..888 2340 99.6 Plus
3L 28110227 3L 15586202..15586603 17..418 2010 100 Plus
Blast to na_te.dros performed on 2015-02-04 20:59:07 has no hits.

BS16968.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:38:15 Download gff for BS16968.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7656-PC 155..1026 17..888 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:37:33 Download gff for BS16968.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7656-RD 391..1265 13..888 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:37:45 Download gff for BS16968.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7656-RD 391..1265 13..888 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:37:45 Download gff for BS16968.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15586199..15586600 13..415 99 <- Plus
3L 15587005..15587477 416..888 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:37:33 Download gff for BS16968.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15579299..15579700 13..415 99 <- Plus
arm_3L 15580105..15580577 416..888 99   Plus

BS16968.5prime Sequence

883 bp (737 high quality bases) assembled on 2007-05-15

> BS16968.5prime
GAAGTTATCAGTCGACATGTCTCGGCATTTGGAAAACTTCTTTACCAACA
GAGTACGGCGACAACTGCAAGTGGCTGAACAAATGACCACCGCCGCCTCC
ACATCGCAGCATGCGACATCGTCCTCCACAATGATGGCGGGCTCTGGATC
CTTGGCGACCTCGTCGTCCGCCGCTGCCCCCACAACCACGCCCAGCAGCT
CGGCCGTTCGCGCCCTGGCCATGGAGTACAAGTCGCTGCAGGAAGAGCCG
GTGGAGGGATTCCGCGTCAAGCTGATCAACGACGACAATCTGTTCGAATG
GGAGGTGGCAATCTTCGGGCCACCGGACACCCTCTACCAGGGCGGCTACT
TCAAGGCGCACATGAAGTTCCCGCACGACTATCCATACTCACCGCCATCC
ATACGCTTCCTGACGAAGGTCTGGCATCCGAATGTTTACGAGAACGGTGA
TCTGTGCATATCCATACTACATCCGCCGGTGGATGATCCGCAGAGTGGCG
AGCTGCCCTGCGAACGCTGGAATCCCACGCAGAATGTGCGCACCATCCTG
CTGTCGGTCATATCGCTGCTCAATGAGCCGAACACATTCTCGCCGGCCAA
CGTGGACGCCTCGGTCATGTACCGCCGATGGCGGGACTCACAGGGTAAGG
ACAATGAGTATCCAAACATCATACGAAAACAGGCACTGGCCGCCAATGCC
GAGGCCAAGCGGGAGGGCATTGTGGTTCCGATGACCCTGGAGGACTACTG
CCTGAAGCCCACGCGCAAGCCCACAACGGAGTCTGGCCTGGATGCCAACT
TCTACGATGATGATTTCGATCTGGAGACGGAGGATGATCTGCCATCTGAT
GATGACTTCGATGAGGACGACGACGATGATGAG

BS16968.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7656-PC 1026 CG7656-RC 1..867 17..883 4335 100 Plus
CG7656-PA 954 CG7656-RA 1..562 83..644 2810 100 Plus
CG7656-PB 810 CG7656-RB 141..418 367..644 1390 100 Plus
CG7656-PA 954 CG7656-RA 560..795 648..883 1180 100 Plus
CG7656-PB 810 CG7656-RB 416..651 648..883 1180 100 Plus
CG7656-PB 810 CG7656-RB 1..141 83..223 705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7656-RD 1410 CG7656-RD 234..1103 14..883 4350 100 Plus
CG7656-RF 2027 CG7656-RF 234..1097 14..883 4250 99.3 Plus
CG7656-RE 1234 CG7656-RE 118..953 48..883 4165 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15587004..15587634 644..14 3155 100 Minus
3L 28110227 3L 15586361..15586603 883..641 1215 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:20:40 has no hits.

BS16968.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:32:01 Download gff for BS16968.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7656-PC 1..867 17..883 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:49:46 Download gff for BS16968.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7656-RD 229..1103 7..883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:37:49 Download gff for BS16968.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7656-RD 229..1103 7..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:37:49 Download gff for BS16968.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15586361..15586600 644..883 100 <- Minus
3L 15587005..15587631 17..643 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:49:46 Download gff for BS16968.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15579461..15579700 644..883 100 <- Minus
arm_3L 15580105..15580731 17..643 100 -> Minus

BS16968.complete Sequence

1058 bp assembled on 2007-05-07

GenBank Submission: FJ638221

> BS16968.complete
GAAGTTATCAGTCGACATGTCTCGGCATTTGGAAAACTTCTTTACCAACA
GAGTACGGCGACAACTGCAAGTGGCTGAACAAATGACCACCGCCGCCTCC
ACATCGCAGCATGCGACATCGTCCTCCACAATGATGGCGGGCTCTGGATC
CTTGGCGACCTCGTCGTCCGCCGCTGCCCCCACAACCACGCCCAGCAGCT
CGGCCGTTCGCGCCCTGGCCATGGAGTACAAGTCGCTGCAGGAAGAGCCG
GTGGAGGGATTCCGCGTCAAGCTGATCAACGACGACAATCTGTTCGAATG
GGAGGTGGCAATCTTCGGGCCACCGGACACCCTCTACCAGGGCGGCTACT
TCAAGGCGCACATGAAGTTCCCGCACGACTATCCATACTCACCGCCATCC
ATACGCTTCCTGACGAAGGTCTGGCATCCGAATGTTTACGAGAACGGTGA
TCTGTGCATATCCATACTACATCCGCCGGTGGATGATCCGCAGAGTGGCG
AGCTGCCCTGCGAACGCTGGAATCCCACGCAGAATGTGCGCACCATCCTG
CTGTCGGTCATATCGCTGCTCAATGAGCCGAACACATTCTCGCCGGCCAA
CGTGGACGCCTCGGTCATGTACCGCCGATGGCGGGACTCACAGGGTAAGG
ACAATGAGTATCCAAACATCATACGAAAACAGGCACTGGCCGCCAATGCC
GAGGCCAAGCGGGAGGGCATTGTGGTTCCGATGACCCTGGAGGACTACTG
CCTGAAGCCCACGCGCAAGCCCACAACGGAGTCTGGCCTGGATGCCAACT
TCTACGATGATGATTTCGATCTGGAGACGGAGGATGATCTGCCATCTGAT
GATGACTTCGATGAGGACGACGACGATGATGAGGACGAGGATGAAGATGA
GGACAGTGCCACGGCGCCGATTAGCAAAAATAATGGAGGCAGCAGCAAGT
GCAAGAACAACGGGCTGGTCAGAGAGGCGGCCGCCGCCGGAGCGGACGAT
GCCGAATCCGCTGATGACAGCGGCAAGGGCGAGACCACATAAAAGCTTTC
TAGACCAT

BS16968.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7656-RE 960 CG7656-PE 1..960 83..1042 4800 100 Plus
CG7656-RD 960 CG7656-PD 1..960 83..1042 4800 100 Plus
CG7656-RF 954 CG7656-PF 1..954 83..1042 4675 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7656-RD 1410 CG7656-RD 234..1262 14..1042 5145 100 Plus
CG7656-RF 2027 CG7656-RF 234..1256 14..1042 5020 99.4 Plus
CG7656-RE 1234 CG7656-RE 118..1112 48..1042 4960 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15587004..15587634 644..14 3155 100 Minus
3L 28110227 3L 15586202..15586603 1042..641 2010 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:38:04 has no hits.

BS16968.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:21 Download gff for BS16968.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RC 1..1026 17..1042 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:20 Download gff for BS16968.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RD 27..1063 7..1046 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:40 Download gff for BS16968.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RD 237..1260 17..1040 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:21 Download gff for BS16968.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RC 27..1063 7..1046 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:21 Download gff for BS16968.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RD 237..1260 17..1040 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:21 Download gff for BS16968.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15586204..15586600 644..1040 100 <- Minus
3L 15587005..15587631 17..643 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:40 Download gff for BS16968.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15579304..15579700 644..1040 100 <- Minus
arm_3L 15580105..15580731 17..643 100   Minus

BS16968.pep Sequence

Translation from 16 to 1041

> BS16968.pep
MSRHLENFFTNRVRRQLQVAEQMTTAASTSQHATSSSTMMAGSGSLATSS
SAAAPTTTPSSSAVRALAMEYKSLQEEPVEGFRVKLINDDNLFEWEVAIF
GPPDTLYQGGYFKAHMKFPHDYPYSPPSIRFLTKVWHPNVYENGDLCISI
LHPPVDDPQSGELPCERWNPTQNVRTILLSVISLLNEPNTFSPANVDASV
MYRRWRDSQGKDNEYPNIIRKQALAANAEAKREGIVVPMTLEDYCLKPTR
KPTTESGLDANFYDDDFDLETEDDLPSDDDFDEDDDDDEDEDEDEDSATA
PISKNNGGSSKCKNNGLVREAAAAGADDAESADDSGKGETT*

BS16968.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7656-PE 319 CG7656-PE 1..319 23..341 1688 100 Plus
CG7656-PD 319 CG7656-PD 1..319 23..341 1688 100 Plus
CG7656-PF 317 CG7656-PF 1..317 23..341 1664 99.4 Plus
CG7656-PA 317 CG7656-PA 1..317 23..341 1664 99.4 Plus
CG40045-PA 168 CG40045-PA 10..148 67..208 433 54.2 Plus