Clone Sequence Records
BS16969.3prime Sequence
881 bp (809 high quality bases) assembled on 2007-05-15
> BS16969.3prime
ATGGTCTAGAAAGCTTTTATTGGCTAGGGGCGTGTATTGGAAGCCTGTAA
AATGGGTTGGCCAGATTAACCCGCGCCGCCGGCAGAAACTCCGGATGTTC
GGTCAGGGTGTCCGACAATGCGCTCAGCAAAACTCTTAAAACCTTCTTTT
GCAAGTCGATGGGTATGACACCCATGTTACCCTCGCGCTCTAGAAATTCC
GTAAGCTTCTGCAGCTCCATTTGGGCCTCATCGGAGCCATGCGAAAGCGA
TTGAGCAAACATTACCTTTGCCAGTTTGTAAAGGATCTCCTCCAGGGAGT
ATTCATTGTACAAGTACTCGACAATCTTGGCCCGACCCTCATCATAGTCA
TTCAAATCTTGCTGTGCCTCGCTGTCCAAAACTTTGAGTTTGTTCCAGAA
GGTGAAGCTATCGAAGCTCTTCGCGGGCAGGACTCCTGCGGCGCCTCGCT
CGATTCCTGATTCCGAACCGGATTCGTGCACTGCTGGGAATGGCTTTTCT
GTGGTTGTGGTGGTGCTTGTTGTCGTCGTGGTCGTAGTGGATGCTGGGGG
CGTGGTAATGGCGGGACTGTGGCGCTTTAACTGATTCTGGCGAACCTCTT
CGGGGAAAATTCGATTGGCATAGGACCGCTGCAAGAACTCTATTCCCAGC
CGAATGTCCTGCAGGAACTTCAGGGCGCTCTCCCGAGTGATCACTTTCCC
CTCAACCAGTTCTTCCACGGCTTTTACCACAGCTGTTTCATCTCCAGTCC
AAAAAATATACTGGGCCATGTCGAACGAAGAGTACTGACCATTCGGACTA
CGCAAGAAGCTTTTGGCGTTCTTCGCATGGGCCGTCGGCTCCACTACGGT
TTTGATCTGCGTCTTCGGCTCCTCCAGCTGG
BS16969.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:38:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9813-PF | 1275 | CG9813-RF | 411..1275 | 881..17 | 4325 | 100 | Minus |
| CG9813-PC | 1275 | CG9813-RC | 411..1275 | 881..17 | 4325 | 100 | Minus |
| CG9813-PE | 1671 | CG9813-RE | 865..1671 | 823..17 | 4035 | 100 | Minus |
| CG9813-PB | 1671 | CG9813-RB | 865..1671 | 823..17 | 4035 | 100 | Minus |
| CG9813-PA | 1671 | CG9813-RA | 865..1671 | 823..17 | 4035 | 100 | Minus |
| CG9813-PD | 1671 | CG9813-RD | 865..1671 | 823..17 | 4035 | 100 | Minus |
| CG9813-PE | 1671 | CG9813-RE | 411..471 | 881..821 | 305 | 100 | Minus |
| CG9813-PB | 1671 | CG9813-RB | 411..471 | 881..821 | 305 | 100 | Minus |
| CG9813-PA | 1671 | CG9813-RA | 411..471 | 881..821 | 305 | 100 | Minus |
| CG9813-PD | 1671 | CG9813-RD | 411..471 | 881..821 | 305 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:17:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9813-RC | 2174 | CG9813-RC | 517..1382 | 881..16 | 4330 | 100 | Minus |
| CG9813-RF | 2179 | CG9813-RF | 522..1387 | 881..16 | 4330 | 100 | Minus |
| CG9813-RG | 2603 | CG9813-RG | 1004..1811 | 823..16 | 4040 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:17:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13374447..13374781 | 358..692 | 1675 | 100 | Plus |
| 3R | 32079331 | 3R | 13374078..13374210 | 135..267 | 665 | 100 | Plus |
| 3R | 32079331 | 3R | 13377533..13377663 | 692..822 | 655 | 100 | Plus |
| 3R | 32079331 | 3R | 13373896..13374015 | 16..135 | 600 | 100 | Plus |
| 3R | 32079331 | 3R | 13374276..13374372 | 263..359 | 485 | 100 | Plus |
| 3R | 32079331 | 3R | 13378402..13378462 | 821..881 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:17:07 has no hits.
BS16969.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:38:29 Download gff for
BS16969.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-PC | 411..1275 | 17..881 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:51:16 Download gff for
BS16969.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RF | 522..1387 | 16..881 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:07:20 Download gff for
BS16969.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RF | 522..1387 | 16..881 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:07:20 Download gff for
BS16969.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13373896..13374015 | 16..135 | 100 | <- | Plus |
| 3R | 13374079..13374208 | 136..265 | 100 | <- | Plus |
| 3R | 13374279..13374370 | 266..357 | 100 | <- | Plus |
| 3R | 13374447..13374780 | 358..691 | 100 | <- | Plus |
| 3R | 13377533..13377661 | 692..820 | 100 | <- | Plus |
| 3R | 13378402..13378462 | 821..881 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:51:16 Download gff for
BS16969.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9199618..9199737 | 16..135 | 100 | <- | Plus |
| arm_3R | 9199801..9199930 | 136..265 | 100 | <- | Plus |
| arm_3R | 9200001..9200092 | 266..357 | 100 | <- | Plus |
| arm_3R | 9200169..9200502 | 358..691 | 100 | <- | Plus |
| arm_3R | 9203255..9203383 | 692..820 | 100 | <- | Plus |
| arm_3R | 9204124..9204184 | 821..881 | 100 | | Plus |
BS16969.5prime Sequence
868 bp (783 high quality bases) assembled on 2007-05-15
> BS16969.5prime
GAAGTTATCAGTCGACATGGCGACGAGGAATCTGTTGGCCATCCTTCTTT
TGGCCAGCATCTGCATGACCCAGGCATATCCGGCTTTGTTGCCCTACATC
TACAATCCTTCCAAGCGCAGCGGTGATACGGCTTTCCCCCAAATCGAGGA
CGATGTAAGTGAACTGGACCAGCTGCGGAATGAACCGGGAGCGGTGATGG
CCAAGCGTCAGCACGATGGAAGTACAGCCCGCACCACCACTACCACCAAG
GAGAGTGTCGAGGAGGTCGCCGCTGTTCCCGAGCCAGGTGCACAACCAAA
TGCGAATATTATGCCCGACTTGGAGAGGCAGTTGGAGGTGGCGACGCCTC
TGATTTCCACCACTACAACCACTAGCACGTCGGCCACCACCACTACGGCG
ACGTCCAAGGAGGAGGGCGAAAGGTCCCAGCTGGAGGAGCCGAAGACGCA
GATCAAAACCGTAGTGGAGCCGACGGCCCATGCGAAGAACGCCAAAAGCT
TCTTGCGTAGTCCGAATGGTCAGTACTCTTCGTTCGACATGGCCCAGTAT
ATTTTTTGGACTGGAGATGAAACAGCTGTGGTAAAAGCCGTGGAAGAACT
GGTTGAGGGGAAAGTGATCACTCGGGAGAGCGCCCTGAAGTTCCTGCAGG
ACATTCGGCTGGGAATAGAGTTCTTGCAGCGGTCCTATGCCAATCGAATT
TTCCCCGAAGAGGTTCGCCAGAATCAGTTAAAGCGCCACAGTCCCGCCAT
TACCACGCCCCCAGCATCCACTACGACCACGACGACAACAAGCACCACCA
CAACCACAGAAAAGCCATTCCCAGCAGTGCACGAATCCGGTTCGGAATCA
GGAATCGAGCGAGGCGCC
BS16969.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:32:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9813-PF | 1275 | CG9813-RF | 1..852 | 17..868 | 4260 | 100 | Plus |
| CG9813-PC | 1275 | CG9813-RC | 1..852 | 17..868 | 4260 | 100 | Plus |
| CG9813-PE | 1671 | CG9813-RE | 1..471 | 17..487 | 2355 | 100 | Plus |
| CG9813-PB | 1671 | CG9813-RB | 1..471 | 17..487 | 2355 | 100 | Plus |
| CG9813-PA | 1671 | CG9813-RA | 1..471 | 17..487 | 2355 | 100 | Plus |
| CG9813-PD | 1671 | CG9813-RD | 1..471 | 17..487 | 2355 | 100 | Plus |
| CG9813-PE | 1671 | CG9813-RE | 865..1248 | 485..868 | 1920 | 100 | Plus |
| CG9813-PB | 1671 | CG9813-RB | 865..1248 | 485..868 | 1920 | 100 | Plus |
| CG9813-PA | 1671 | CG9813-RA | 865..1248 | 485..868 | 1920 | 100 | Plus |
| CG9813-PD | 1671 | CG9813-RD | 865..1248 | 485..868 | 1920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:06:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9813-RC | 2174 | CG9813-RC | 106..958 | 16..868 | 4265 | 100 | Plus |
| CG9813-RF | 2179 | CG9813-RF | 111..963 | 16..868 | 4265 | 100 | Plus |
| CG9813-RG | 2603 | CG9813-RG | 106..577 | 16..487 | 2360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:06:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13378402..13378784 | 487..105 | 1915 | 100 | Minus |
| 3R | 32079331 | 3R | 13374529..13374781 | 868..616 | 1265 | 100 | Minus |
| 3R | 32079331 | 3R | 13377533..13377663 | 616..486 | 655 | 100 | Minus |
| 3R | 32079331 | 3R | 13379003..13379091 | 104..16 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:06:46 has no hits.
BS16969.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:32:10 Download gff for
BS16969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-PC | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:17:50 Download gff for
BS16969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RF | 108..963 | 9..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:52:51 Download gff for
BS16969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RF | 108..963 | 9..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:52:51 Download gff for
BS16969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13374529..13374780 | 617..868 | 100 | <- | Minus |
| 3R | 13377533..13377661 | 488..616 | 100 | <- | Minus |
| 3R | 13378402..13378784 | 105..487 | 100 | <- | Minus |
| 3R | 13379003..13379094 | 9..104 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:17:50 Download gff for
BS16969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9200251..9200502 | 617..868 | 100 | <- | Minus |
| arm_3R | 9203255..9203383 | 488..616 | 100 | <- | Minus |
| arm_3R | 9204124..9204506 | 105..487 | 100 | <- | Minus |
| arm_3R | 9204725..9204816 | 9..104 | 95 | | Minus |
BS16969.complete Sequence
1307 bp assembled on 2007-05-07
GenBank Submission: FJ638222
> BS16969.complete
GAAGTTATCAGTCGACATGGCGACGAGGAATCTGTTGGCCATCCTTCTTT
TGGCCAGCATCTGCATGACCCAGGCATATCCGGCTTTGTTGCCCTACATC
TACAATCCTTCCAAGCGCAGCGGTGATACGGCTTTCCCCCAAATCGAGGA
CGATGTAAGTGAACTGGACCAGCTGCGGAATGAACCGGGAGCGGTGATGG
CCAAGCGTCAGCACGATGGAAGTACAGCCCGCACCACCACTACCACCAAG
GAGAGTGTCGAGGAGGTCGCCGCTGTTCCCGAGCCAGGTGCACAACCAAA
TGCGAATATTATGCCCGACTTGGAGAGGCAGTTGGAGGTGGCGACGCCTC
TGATTTCCACCACTACAACCACTAGCACGTCGGCCACCACCACTACGGCG
ACGTCCAAGGAGGAGGGCGAAAGGTCCCAGCTGGAGGAGCCGAAGACGCA
GATCAAAACCGTAGTGGAGCCGACGGCCCATGCGAAGAACGCCAAAAGCT
TCTTGCGTAGTCCGAATGGTCAGTACTCTTCGTTCGACATGGCCCAGTAT
ATTTTTTGGACTGGAGATGAAACAGCTGTGGTAAAAGCCGTGGAAGAACT
GGTTGAGGGGAAAGTGATCACTCGGGAGAGCGCCCTGAAGTTCCTGCAGG
ACATTCGGCTGGGAATAGAGTTCTTGCAGCGGTCCTATGCCAATCGAATT
TTCCCCGAAGAGGTTCGCCAGAATCAGTTAAAGCGCCACAGTCCCGCCAT
TACCACGCCCCCAGCATCCACTACGACCACGACGACAACAAGCACCACCA
CAACCACAGAAAAGCCATTCCCAGCAGTGCACGAATCCGGTTCGGAATCA
GGAATCGAGCGAGGCGCCGCAGGAGTCCTGCCCGCGAAGAGCTTCGATAG
CTTCACCTTCTGGAACAAACTCAAAGTTTTGGACAGCGAGGCACAGCAAG
ATTTGAATGACTATGATGAGGGTCGGGCCAAGATTGTCGAGTACTTGTAC
AATGAATACTCCCTGGAGGAGATCCTTTACAAACTGGCAAAGGTAATGTT
TGCTCAATCGCTTTCGCATGGCTCCGATGAGGCCCAAATGGAGCTGCAGA
AGCTTACGGAATTTCTAGAGCGCGAGGGTAACATGGGTGTCATACCCATC
GACTTGCAAAAGAAGGTTTTAAGAGTTTTGCTGAGCGCATTGTCGGACAC
CCTGACCGAACATCCGGAGTTTCTGCCGGCGGCGCGGGTTAATCTGGCCA
ACCCATTTTACAGGCTTCCAATACACGCCCCTAGCCAATAAAAGCTTTCT
AGACCAT
BS16969.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9813-RC | 1275 | CG9813-PC | 1..1275 | 17..1291 | 6375 | 100 | Plus |
| CG9813-RF | 1275 | CG9813-PF | 1..1275 | 17..1291 | 6375 | 100 | Plus |
| CG9813-RG | 1704 | CG9813-PG | 898..1704 | 485..1291 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9813-RC | 2174 | CG9813-RC | 106..1382 | 16..1292 | 6385 | 100 | Plus |
| CG9813-RF | 2179 | CG9813-RF | 111..1387 | 16..1292 | 6385 | 100 | Plus |
| CG9813-RG | 2603 | CG9813-RG | 1004..1811 | 485..1292 | 4040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13378402..13378784 | 487..105 | 1915 | 100 | Minus |
| 3R | 32079331 | 3R | 13374447..13374781 | 950..616 | 1675 | 100 | Minus |
| 3R | 32079331 | 3R | 13374078..13374210 | 1173..1041 | 665 | 100 | Minus |
| 3R | 32079331 | 3R | 13377533..13377663 | 616..486 | 655 | 100 | Minus |
| 3R | 32079331 | 3R | 13373896..13374015 | 1292..1173 | 600 | 100 | Minus |
| 3R | 32079331 | 3R | 13374276..13374372 | 1045..949 | 485 | 100 | Minus |
| 3R | 32079331 | 3R | 13379003..13379091 | 104..16 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:43:14 has no hits.
BS16969.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:22 Download gff for
BS16969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RA | 1..471 | 17..487 | 100 | -> | Plus |
| CG9813-RA | 868..1671 | 488..1291 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:22 Download gff for
BS16969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RA | 150..624 | 9..487 | 99 | -> | Plus |
| CG9813-RA | 1021..1825 | 488..1292 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:15 Download gff for
BS16969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RF | 112..1384 | 17..1289 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:22 Download gff for
BS16969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RA | 150..624 | 9..487 | 99 | -> | Plus |
| CG9813-RA | 1021..1825 | 488..1292 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:20 Download gff for
BS16969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RF | 112..1384 | 17..1289 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:20 Download gff for
BS16969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13378402..13378784 | 105..487 | 100 | <- | Minus |
| 3R | 13373899..13374015 | 1173..1289 | 100 | <- | Minus |
| 3R | 13374079..13374208 | 1043..1172 | 100 | <- | Minus |
| 3R | 13374279..13374370 | 951..1042 | 100 | <- | Minus |
| 3R | 13374447..13374780 | 617..950 | 100 | <- | Minus |
| 3R | 13377533..13377661 | 488..616 | 100 | <- | Minus |
| 3R | 13379003..13379090 | 17..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:15 Download gff for
BS16969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9199621..9199737 | 1173..1289 | 100 | <- | Minus |
| arm_3R | 9199801..9199930 | 1043..1172 | 100 | <- | Minus |
| arm_3R | 9200001..9200092 | 951..1042 | 100 | <- | Minus |
| arm_3R | 9200169..9200502 | 617..950 | 100 | <- | Minus |
| arm_3R | 9203255..9203383 | 488..616 | 100 | <- | Minus |
| arm_3R | 9204124..9204506 | 105..487 | 100 | <- | Minus |
| arm_3R | 9204725..9204812 | 17..104 | 100 | | Minus |
BS16969.pep Sequence
Translation from 16 to 1290
> BS16969.pep
MATRNLLAILLLASICMTQAYPALLPYIYNPSKRSGDTAFPQIEDDVSEL
DQLRNEPGAVMAKRQHDGSTARTTTTTKESVEEVAAVPEPGAQPNANIMP
DLERQLEVATPLISTTTTTSTSATTTTATSKEEGERSQLEEPKTQIKTVV
EPTAHAKNAKSFLRSPNGQYSSFDMAQYIFWTGDETAVVKAVEELVEGKV
ITRESALKFLQDIRLGIEFLQRSYANRIFPEEVRQNQLKRHSPAITTPPA
STTTTTTTSTTTTTEKPFPAVHESGSESGIERGAAGVLPAKSFDSFTFWN
KLKVLDSEAQQDLNDYDEGRAKIVEYLYNEYSLEEILYKLAKVMFAQSLS
HGSDEAQMELQKLTEFLEREGNMGVIPIDLQKKVLRVLLSALSDTLTEHP
EFLPAARVNLANPFYRLPIHAPSQ*
BS16969.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9813-PC | 424 | CG9813-PC | 1..424 | 1..424 | 2141 | 100 | Plus |
| CG9813-PF | 424 | CG9813-PF | 1..424 | 1..424 | 2141 | 100 | Plus |
| CG9813-PD | 556 | CG9813-PD | 180..556 | 69..424 | 1391 | 77.2 | Plus |
| CG9813-PA | 556 | CG9813-PA | 180..556 | 69..424 | 1391 | 77.2 | Plus |
| CG9813-PB | 556 | CG9813-PB | 180..556 | 69..424 | 1391 | 77.2 | Plus |
| CG9813-PD | 556 | CG9813-PD | 1..169 | 1..169 | 786 | 94.7 | Plus |
| CG9813-PA | 556 | CG9813-PA | 1..169 | 1..169 | 786 | 94.7 | Plus |
