Clone Sequence Records
BS16970.3prime Sequence
884 bp (789 high quality bases) assembled on 2007-05-15
> BS16970.3prime
ATGGTCTAGAAAGCTTTCAGCTTTCGGCATTGGAAGAGAACGTGCGCCAA
TTGTCCGATCGCCACTGGCAGCGTGTGTCCAGGTGGCGCAACTTGATCTC
TGCGTAGATCTTTTCGAAATGAGGAGCCGCCTTGCGAGCACTTTCGGCCA
GGATCTCAAACCAGATGGCCTCACTGAGTTCGGTGCTGGTGTGGCACATA
GAGATGCGCGTGCATCCGAGGATACGTTCTCGGAACTGACGCACCAGTTC
GCCGAGGCAGGAATGGAAAGCGGTGGCTTTGTTGCTACTCACCTCCGGCA
GGAGGAAGGTGTTTAAGCACCGTGCATCGCCTCTTCCCCGGTATATGGGC
AGCCCCGTCGGCCCGTATAAGTAGGCCAACTTTTTGTCCAGTCGTTCCCG
CTGCTGTATCTCAAAGTCTATTCGATGGGCACGCGCGCGGACGAATACTA
CCTGCGGCATGTGATCCCGTACATAGCCTTTGCAATGAAGCGTCGGTCTC
AGGCGAAGGGCAGCGTTTATCAGACGCAATTGTTCCAAGGCCAAGCCATC
GATGACTAAAATTAATATATGGCATACACTCAACAGTTGCGCCATGGTGC
CCAGGGAGTAAAGATCCTGGTGATCCGAGTCCTTGCCTACAGGCATTAAC
GGTGGTGTGTCCAGCAGTATGTGACGTTCCCGGGTGATAAAAAACTGCAG
GGTTTCCGTGCGAGGACGCAAAATGCTCTTCTGCCCATTGTTCGGCTTCA
ACTTGTGACGCGTGGCAAAGATGCATTCATCCGCCTCTGGAGAGAATAGA
TGTTGATAGTAGTCGTAGTCCAGGGACCGCTCTGCGGCCAGAAGATTGAG
CAGCGTGCTTTTTCCGGAACTCTGACCACCCAGG
BS16970.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:41:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3857-PA | 1464 | CG3857-RA | 597..1464 | 884..17 | 4340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:05:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3857-RA | 2341 | CG3857-RA | 683..1550 | 884..17 | 4340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:05:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1938491..1939358 | 17..884 | 4340 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 12:05:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| invader6 | 4885 | invader6 INVADER6 4885bp | 3429..3477 | 164..116 | 110 | 69.4 | Minus |
BS16970.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:41:24 Download gff for
BS16970.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3857-PA | 597..1464 | 17..884 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:57:25 Download gff for
BS16970.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3857-RA | 683..1550 | 17..884 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:24:53 Download gff for
BS16970.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3857-RA | 683..1550 | 17..884 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:24:53 Download gff for
BS16970.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1938491..1939358 | 17..884 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:57:25 Download gff for
BS16970.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1832524..1833391 | 17..884 | 100 | | Plus |
BS16970.5prime Sequence
907 bp (752 high quality bases) assembled on 2007-05-15
> BS16970.5prime
GAAGTTATCAGTCGACATGGCTGATCCCCGTCGTCGTTTCCGTAACAAAA
AGCGGGATGAAGCCTGCTCCGGCCTCCTGGCACCCGTGACCATCGCCCGG
CGCGAGGACGCCGCCCGCATGATGCAGCCAAAAATTCTGCTAAAGAAGGA
TCGCGATCGGGAGCAAGAGACCTGGGACAGAGAGCGGGACAAGGATAGGA
AGCTGGAGAGGGACAGGGAGGCGGAGCCAAGTCCCAGTTGTTACCCCGAT
ACACCGCCGGCCCTCAAAACGATGATCGTCAATCGTACGGGTGAGGTGCG
GCCTGCAGACAGATGCCAGATGCCTTTGGCCGGAGGTGCTCTTGTCCAGG
GAAGCGGGCAATTGTCCGCCGTGCCATCCAGCTCCGTTTGCGCCGCATTG
GTTAGCTCGGTACCAACTAGCAGGGACAAGGGGAGCTGCAGTGGTGGTGC
CGGAACAGCTGGCACCTCGGCCGGAGCACCGAATGCTCTCCAGGAGCTGC
AGCCGCCACGCATGAACCGTCCCACACCCCTAATCGTGGCCAATGGTATT
TTTAATGCCAATGCCCGCAAGCTCTTCCACAAAACCAATACGGACTTCAC
CGTAATCGGGGTCCTGGGTGGTCAGAGTTCCGGAAAAAGCACGCTGCTCA
ATCTTCTGGCCGCAGAGCGGTCCCTGGACTACGACTACTATCAACATCTA
TTCTCTCCAGAGGCGGATGAATGCATCTTTGCCACGCGTCACAAGTTGAA
GCCGAACAATGGGCAGAAGAGCATTTTGCGTCCTCGCACGGAAACCCTGC
AGTTTTTTATCACCCGGGAACGTCACATACTGCTGGACACACCACCGTTA
ATGCCTGTAGGCAAGGACTCGGATCACCAGGATCTTTACTCCCTGGGCAC
CATGGCG
BS16970.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:34:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3857-PA | 1464 | CG3857-RA | 1..891 | 17..907 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:58:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3857-RA | 2341 | CG3857-RA | 87..977 | 17..907 | 4455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:58:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1939064..1939954 | 907..17 | 4455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 11:58:55 has no hits.
BS16970.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:34:51 Download gff for
BS16970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3857-PA | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:47:49 Download gff for
BS16970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3857-RA | 82..977 | 8..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:20:17 Download gff for
BS16970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3857-RA | 82..977 | 8..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:20:17 Download gff for
BS16970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1939064..1939959 | 8..907 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:47:49 Download gff for
BS16970.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1833097..1833992 | 8..907 | 99 | | Minus |
BS16970.complete Sequence
1496 bp assembled on 2007-05-07
GenBank Submission: FJ638223
> BS16970.complete
GAAGTTATCAGTCGACATGGCTGATCCCCGTCGTCGTTTCCGTAACAAAA
AGCGGGATGAAGCCTGCTCCGGCCTCCTGGCACCCGTGACCATCGCCCGG
CGCGAGGACGCCGCCCGCATGATGCAGCCAAAAATTCTGCTAAAGAAGGA
TCGCGATCGGGAGCAAGAGACCTGGGACAGAGAGCGGGACAAGGATAGGA
AGCTGGAGAGGGACAGGGAGGCGGAGCCAAGTCCCAGTTGTTACCCCGAT
ACACCGCCGGCCCTCAAAACGATGATCGTCAATCGTACGGGTGAGGTGCG
GCCTGCAGACAGATGCCAGATGCCTTTGGCCGGAGGTGCTCTTGTCCAGG
GAAGCGGGCAATTGTCCGCCGTGCCATCCAGCTCCGTTTGCGCCGCATTG
GTTAGCTCGGTACCAACTAGCAGGGACAAGGGGAGCTGCAGTGGTGGTGC
CGGAACAGCTGGCACCTCGGCCGGAGCACCGAATGCTCTCCAGGAGCTGC
AGCCGCCACGCATGAACCGTCCCACACCCCTAATCGTGGCCAATGGTATT
TTTAATGCCAATGCCCGCAAGCTCTTCCACAAAACCAATACGGACTTCAC
CGTAATCGGGGTCCTGGGTGGTCAGAGTTCCGGAAAAAGCACGCTGCTCA
ATCTTCTGGCCGCAGAGCGGTCCCTGGACTACGACTACTATCAACATCTA
TTCTCTCCAGAGGCGGATGAATGCATCTTTGCCACGCGTCACAAGTTGAA
GCCGAACAATGGGCAGAAGAGCATTTTGCGTCCTCGCACGGAAACCCTGC
AGTTTTTTATCACCCGGGAACGTCACATACTGCTGGACACACCACCGTTA
ATGCCTGTAGGCAAGGACTCGGATCACCAGGATCTTTACTCCCTGGGCAC
CATGGCGCAACTGTTGAGTGTATGCCATATATTAATTTTAGTCATCGATG
GCTTGGCCTTGGAACAATTGCGTCTGATAAACGCTGCCCTTCGCCTGAGA
CCGACGCTTCATTGCAAAGGCTATGTACGGGATCACATGCCGCAGGTAGT
ATTCGTCCGCGCGCGTGCCCATCGAATAGACTTTGAGATACAGCAGCGGG
AACGACTGGACAAAAAGTTGGCCTACTTATACGGGCCGACGGGGCTGCCC
ATATACCGGGGAAGAGGCGATGCACGGTGCTTAAACACCTTCCTCCTGCC
GGAGGTGAGTAGCAACAAAGCCACCGCTTTCCATTCCTGCCTCGGCGAAC
TGGTGCGTCAGTTCCGAGAACGTATCCTCGGATGCACGCGCATCTCTATG
TGCCACACCAGCACCGAACTCAGTGAGGCCATCTGGTTTGAGATCCTGGC
CGAAAGTGCTCGCAAGGCGGCTCCTCATTTCGAAAAGATCTACGCAGAGA
TCAAGTTGCGCCACCTGGACACACGCTGCCAGTGGCGATCGGACAATTGG
CGCACGTTCTCTTCCAATGCCGAAAGCTGAAAGCTTTCTAGACCAT
BS16970.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:00:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3857-RA | 1464 | CG3857-PA | 1..1464 | 17..1480 | 7320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:00:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3857-RA | 2341 | CG3857-RA | 87..1550 | 17..1480 | 7320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:00:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1938491..1939954 | 1480..17 | 7320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:00:07 has no hits.
BS16970.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:24 Download gff for
BS16970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3857-RA | 1..1464 | 17..1480 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:24 Download gff for
BS16970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3857-RA | 49..1517 | 8..1480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:27 Download gff for
BS16970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3857-RA | 87..1549 | 17..1479 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:24 Download gff for
BS16970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3857-RA | 49..1517 | 8..1480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:32 Download gff for
BS16970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3857-RA | 87..1549 | 17..1479 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:32 Download gff for
BS16970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1938492..1939954 | 17..1479 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:27 Download gff for
BS16970.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1832525..1833987 | 17..1479 | 100 | | Minus |
BS16970.pep Sequence
Translation from 16 to 1479
> BS16970.pep
MADPRRRFRNKKRDEACSGLLAPVTIARREDAARMMQPKILLKKDRDREQ
ETWDRERDKDRKLERDREAEPSPSCYPDTPPALKTMIVNRTGEVRPADRC
QMPLAGGALVQGSGQLSAVPSSSVCAALVSSVPTSRDKGSCSGGAGTAGT
SAGAPNALQELQPPRMNRPTPLIVANGIFNANARKLFHKTNTDFTVIGVL
GGQSSGKSTLLNLLAAERSLDYDYYQHLFSPEADECIFATRHKLKPNNGQ
KSILRPRTETLQFFITRERHILLDTPPLMPVGKDSDHQDLYSLGTMAQLL
SVCHILILVIDGLALEQLRLINAALRLRPTLHCKGYVRDHMPQVVFVRAR
AHRIDFEIQQRERLDKKLAYLYGPTGLPIYRGRGDARCLNTFLLPEVSSN
KATAFHSCLGELVRQFRERILGCTRISMCHTSTELSEAIWFEILAESARK
AAPHFEKIYAEIKLRHLDTRCQWRSDNWRTFSSNAES*
BS16970.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3857-PA | 487 | CG3857-PA | 1..487 | 1..487 | 2541 | 100 | Plus |
