Clone Sequence Records
BS16971.3prime Sequence
911 bp (789 high quality bases) assembled on 2007-05-15
> BS16971.3prime
ATGGTCTAGAAAGCTTCTAAAGCTTGCTCTCCTTCGCCTCCTTGGCCTTC
TGGCGGGATGCAGCCGCTGCCGCCGGTCCGAAGCGCTGGATAAAGTTGTT
GACCGGTGCAATGATGGCCTCTGGATCGTTCATGTGCACATGGTGCGAGC
CATTAACCTCCAGGTACTCAAAGTTCGGCTTCTTCAACAGCACATCCAGC
ACCTCGTCGTAGTACTTCTTGTCCTCGAAATACGAGGACTGGGCGGCCTT
GATGAACAAGTAAGGACATGTAATCCGATTGGCCATTTCCACACACAGCT
CCTGGGACCCGATGGCATAGTTGTAAAACTTGAGACGCCTATCGCGGCAG
AAGAAGTACTTGTCCGGGTACTTCTCCGACTTGCCGATGTTGCGAGCCAT
TAAATGCTTGCAGTGCTCCTTGTTCACCGAATGGAAGGTGCCGATATAGA
CCCTCTCAATAAGTTCATCGTAGGTGTAGCTCGGCGGCTCGTTCTTACTC
CGGTTCCTTTCGTCTTCACGCAAGAACTCGTCCAAACGGGTTTCCATGGT
CCTAATAACCGACGGATACGGACGCTGATGAGGTTTCAGGGCATCAATCC
CAATGATCATGTCCACCTTGTCCGGAAAGACCGCGGCGAAAACAAAGCAA
ATAATGGACGACATTGAGTGTCCAACCAGGGACACTTTCTCCCACTTGTA
CTGCTTCATGATCAGGCGGATCACATACAGATTATCCACGGAGTTGTAGT
AGCAGCCATCAGGCAGTCGGGACGATAGCCCGTGACCAGGAAGATCGATC
GCGAGGAATGCCACGTCCGGCGACAGCAGCGGCATCAGGCGATCAAAGGT
TCCCGCATTATCCTGCCACCCGTGCAGTCCTAAAATTGGGTTGGACGTCC
TGCGGAACCGT
BS16971.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:41:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11309-PB | 1047 | CG11309-RB | 175..1047 | 889..17 | 4365 | 100 | Minus |
CG11309-PA | 1077 | CG11309-RA | 205..1077 | 889..17 | 4365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:28:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11309-RF | 2125 | CG11309-RF | 417..1305 | 906..17 | 4410 | 99.8 | Minus |
CG11309-RE | 1206 | CG11309-RE | 193..1081 | 906..17 | 4410 | 99.8 | Minus |
CG11309-RD | 1536 | CG11309-RD | 319..1207 | 906..17 | 4410 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:28:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21302605..21303493 | 17..906 | 4385 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:28:41 has no hits.
BS16971.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:41:33 Download gff for
BS16971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-PA | 185..1077 | 17..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:22:48 Download gff for
BS16971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RC | 285..1179 | 13..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:10 Download gff for
BS16971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RD | 315..1209 | 13..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:10 Download gff for
BS16971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21302603..21303497 | 13..911 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:22:48 Download gff for
BS16971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21295703..21296597 | 13..911 | 99 | | Plus |
BS16971.5prime Sequence
854 bp (802 high quality bases) assembled on 2007-05-15
> BS16971.5prime
GAAGTTATCAGTCGACATGGACACGGACGACAACTCAAGTGGCACTATTA
CCGGCAGTGATCTTGGCCAGCGTTATCGGCATGCAGGCGACTTAACTGGC
GAAGCCCCAACCAGACCCTTCGCCGAGATCAGCATTACGGTTCCATGGGG
GCACATATCCGGCAAGTGGTACGGTCCGCAGAACGTCCAACCAATTTTAG
GACTGCACGGGTGGCAGGATAATGCGGGAACCTTTGATCGCCTGATGCCG
CTGCTGTCGCCGGACGTGGCATTCCTCGCGATCGATCTTCCTGGTCACGG
GCTATCGTCCCGACTGCCTGATGGCTGCTACTACAACTCCGTGGATAATC
TGTATGTGATCCGCCTGATCATGAAGCAGTACAAGTGGGAGAAAGTGTCC
CTGGTTGGACACTCAATGTCGTCCATTATTTGCTTTGTTTTCGCCGCGGT
CTTTCCGGACAAGGTGGACATGATCATTGGGATTGATGCCCTGAAACCTC
ATCAGCGTCCGTATCCGTCGGTTATTAGGACCATGGAAACCCGTTTGGAC
GAGTTCTTGCGTGAAGACGAAAGGAACCGGAGTAAGAACGAGCCGCCGAG
CTACACCTACGATGAACTTATTGAGAGGGTCTATATCGGCACCTTCCATT
CGGTGAACAAGGAGCACTGCAAGCATTTAATGGCTCGCAACATCGGCAAG
TCGGAGAAGTACCCGGACAAGTACTTCTTCTGCCGCGATAGGCGTCTCAA
GTTTTACAACTATGCCATCGGGTCCCAGGAGCTGTGTGTGGAAATGGCCA
ATCGGATTACATGTCCTTACTTGTTCATCAAGGCCGCCCAGTCCTCGTAT
TTCG
BS16971.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:34:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11309-PB | 1047 | CG11309-RB | 1..838 | 17..854 | 4190 | 100 | Plus |
CG11309-PA | 1077 | CG11309-RA | 132..868 | 118..854 | 3685 | 100 | Plus |
CG11309-PA | 1077 | CG11309-RA | 1..102 | 17..118 | 510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:49:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11309-RF | 2125 | CG11309-RF | 259..1096 | 17..854 | 4190 | 100 | Plus |
CG11309-RE | 1206 | CG11309-RE | 35..872 | 17..854 | 4190 | 100 | Plus |
CG11309-RD | 1536 | CG11309-RD | 161..998 | 17..854 | 4190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:49:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21302814..21303549 | 854..119 | 3680 | 100 | Minus |
3L | 28110227 | 3L | 21303910..21304011 | 118..17 | 510 | 100 | Minus |
3L | 28110227 | 3L | 21305088..21305198 | 128..238 | 210 | 79.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:49:18 has no hits.
BS16971.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:34:59 Download gff for
BS16971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-PB | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:02:00 Download gff for
BS16971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RC | 128..968 | 14..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:50:26 Download gff for
BS16971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RD | 158..998 | 14..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:50:26 Download gff for
BS16971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21302814..21303549 | 119..854 | 100 | <- | Minus |
3L | 21303910..21304014 | 14..118 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:02:00 Download gff for
BS16971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21295914..21296649 | 119..854 | 100 | <- | Minus |
arm_3L | 21297010..21297114 | 14..118 | 99 | | Minus |
BS16971.complete Sequence
1079 bp assembled on 2007-05-07
GenBank Submission: FJ638224
> BS16971.complete
GAAGTTATCAGTCGACATGGACACGGACGACAACTCAAGTGGCACTATTA
CCGGCAGTGATCTTGGCCAGCGTTATCGGCATGCAGGCGACTTAACTGGC
GAAGCCCCAACCAGACCCTTCGCCGAGATCAGCATTACGGTTCCATGGGG
GCACATATCCGGCAAGTGGTACGGTCCGCAGAACGTCCAACCAATTTTAG
GACTGCACGGGTGGCAGGATAATGCGGGAACCTTTGATCGCCTGATGCCG
CTGCTGTCGCCGGACGTGGCATTCCTCGCGATCGATCTTCCTGGTCACGG
GCTATCGTCCCGACTGCCTGATGGCTGCTACTACAACTCCGTGGATAATC
TGTATGTGATCCGCCTGATCATGAAGCAGTACAAGTGGGAGAAAGTGTCC
CTGGTTGGACACTCAATGTCGTCCATTATTTGCTTTGTTTTCGCCGCGGT
CTTTCCGGACAAGGTGGACATGATCATTGGGATTGATGCCCTGAAACCTC
ATCAGCGTCCGTATCCGTCGGTTATTAGGACCATGGAAACCCGTTTGGAC
GAGTTCTTGCGTGAAGACGAAAGGAACCGGAGTAAGAACGAGCCGCCGAG
CTACACCTACGATGAACTTATTGAGAGGGTCTATATCGGCACCTTCCATT
CGGTGAACAAGGAGCACTGCAAGCATTTAATGGCTCGCAACATCGGCAAG
TCGGAGAAGTACCCGGACAAGTACTTCTTCTGCCGCGATAGGCGTCTCAA
GTTTTACAACTATGCCATCGGGTCCCAGGAGCTGTGTGTGGAAATGGCCA
ATCGGATTACATGTCCTTACTTGTTCATCAAGGCCGCCCAGTCCTCGTAT
TTCGAGGACAAGAAGTACTACGACGAGGTGCTGGATGTGCTGTTGAAGAA
GCCGAACTTTGAGTACCTGGAGGTTAATGGCTCGCACCATGTGCACATGA
ACGATCCAGAGGCCATCATTGCACCGGTCAACAACTTTATCCAGCGCTTC
GGACCGGCGGCAGCGGCTGCATCCCGCCAGAAGGCCAAGGAGGCGAAGGA
GAGCAAGCTTTAGAAGCTTTCTAGACCAT
BS16971.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:22:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11309-RF | 1047 | CG11309-PF | 1..1047 | 17..1063 | 5235 | 100 | Plus |
CG11309-RE | 1047 | CG11309-PE | 1..1047 | 17..1063 | 5235 | 100 | Plus |
CG11309-RD | 1047 | CG11309-PD | 1..1047 | 17..1063 | 5235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:22:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11309-RF | 2125 | CG11309-RF | 259..1305 | 17..1063 | 5235 | 100 | Plus |
CG11309-RE | 1206 | CG11309-RE | 35..1081 | 17..1063 | 5235 | 100 | Plus |
CG11309-RD | 1536 | CG11309-RD | 161..1207 | 17..1063 | 5235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:22:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21302605..21303549 | 1063..119 | 4725 | 100 | Minus |
3L | 28110227 | 3L | 21303910..21304011 | 118..17 | 510 | 100 | Minus |
3L | 28110227 | 3L | 21305088..21305198 | 128..238 | 210 | 79.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:22:27 has no hits.
BS16971.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:04 Download gff for
BS16971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RB | 1..1047 | 17..1063 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:02 Download gff for
BS16971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RB | 251..1302 | 14..1067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:04 Download gff for
BS16971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RC | 131..1177 | 17..1063 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:04 Download gff for
BS16971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RB | 251..1302 | 14..1067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:00 Download gff for
BS16971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RD | 161..1207 | 17..1063 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:00 Download gff for
BS16971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21302605..21303549 | 119..1063 | 100 | <- | Minus |
3L | 21303910..21304011 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:04 Download gff for
BS16971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21295705..21296649 | 119..1063 | 100 | <- | Minus |
arm_3L | 21297010..21297111 | 17..118 | 100 | | Minus |
BS16971.pep Sequence
Translation from 16 to 1062
> BS16971.pep
MDTDDNSSGTITGSDLGQRYRHAGDLTGEAPTRPFAEISITVPWGHISGK
WYGPQNVQPILGLHGWQDNAGTFDRLMPLLSPDVAFLAIDLPGHGLSSRL
PDGCYYNSVDNLYVIRLIMKQYKWEKVSLVGHSMSSIICFVFAAVFPDKV
DMIIGIDALKPHQRPYPSVIRTMETRLDEFLREDERNRSKNEPPSYTYDE
LIERVYIGTFHSVNKEHCKHLMARNIGKSEKYPDKYFFCRDRRLKFYNYA
IGSQELCVEMANRITCPYLFIKAAQSSYFEDKKYYDEVLDVLLKKPNFEY
LEVNGSHHVHMNDPEAIIAPVNNFIQRFGPAAAAASRQKAKEAKESKL*
BS16971.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11309-PF | 348 | CG11309-PF | 1..348 | 1..348 | 1864 | 100 | Plus |
CG11309-PE | 348 | CG11309-PE | 1..348 | 1..348 | 1864 | 100 | Plus |
CG11309-PD | 348 | CG11309-PD | 1..348 | 1..348 | 1864 | 100 | Plus |
CG11309-PC | 348 | CG11309-PC | 1..348 | 1..348 | 1864 | 100 | Plus |
CG11309-PB | 348 | CG11309-PB | 1..348 | 1..348 | 1864 | 100 | Plus |