Clone BS16971 Report

Search the DGRC for BS16971

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:169
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG11309-RB
Protein status:BS16971.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16971.3prime Sequence

911 bp (789 high quality bases) assembled on 2007-05-15

> BS16971.3prime
ATGGTCTAGAAAGCTTCTAAAGCTTGCTCTCCTTCGCCTCCTTGGCCTTC
TGGCGGGATGCAGCCGCTGCCGCCGGTCCGAAGCGCTGGATAAAGTTGTT
GACCGGTGCAATGATGGCCTCTGGATCGTTCATGTGCACATGGTGCGAGC
CATTAACCTCCAGGTACTCAAAGTTCGGCTTCTTCAACAGCACATCCAGC
ACCTCGTCGTAGTACTTCTTGTCCTCGAAATACGAGGACTGGGCGGCCTT
GATGAACAAGTAAGGACATGTAATCCGATTGGCCATTTCCACACACAGCT
CCTGGGACCCGATGGCATAGTTGTAAAACTTGAGACGCCTATCGCGGCAG
AAGAAGTACTTGTCCGGGTACTTCTCCGACTTGCCGATGTTGCGAGCCAT
TAAATGCTTGCAGTGCTCCTTGTTCACCGAATGGAAGGTGCCGATATAGA
CCCTCTCAATAAGTTCATCGTAGGTGTAGCTCGGCGGCTCGTTCTTACTC
CGGTTCCTTTCGTCTTCACGCAAGAACTCGTCCAAACGGGTTTCCATGGT
CCTAATAACCGACGGATACGGACGCTGATGAGGTTTCAGGGCATCAATCC
CAATGATCATGTCCACCTTGTCCGGAAAGACCGCGGCGAAAACAAAGCAA
ATAATGGACGACATTGAGTGTCCAACCAGGGACACTTTCTCCCACTTGTA
CTGCTTCATGATCAGGCGGATCACATACAGATTATCCACGGAGTTGTAGT
AGCAGCCATCAGGCAGTCGGGACGATAGCCCGTGACCAGGAAGATCGATC
GCGAGGAATGCCACGTCCGGCGACAGCAGCGGCATCAGGCGATCAAAGGT
TCCCGCATTATCCTGCCACCCGTGCAGTCCTAAAATTGGGTTGGACGTCC
TGCGGAACCGT

BS16971.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-PB 1047 CG11309-RB 175..1047 889..17 4365 100 Minus
CG11309-PA 1077 CG11309-RA 205..1077 889..17 4365 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-RF 2125 CG11309-RF 417..1305 906..17 4410 99.8 Minus
CG11309-RE 1206 CG11309-RE 193..1081 906..17 4410 99.8 Minus
CG11309-RD 1536 CG11309-RD 319..1207 906..17 4410 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21302605..21303493 17..906 4385 99.8 Plus
Blast to na_te.dros performed on 2015-02-10 15:28:41 has no hits.

BS16971.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:41:33 Download gff for BS16971.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11309-PA 185..1077 17..911 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:22:48 Download gff for BS16971.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11309-RC 285..1179 13..911 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:10 Download gff for BS16971.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11309-RD 315..1209 13..911 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:10 Download gff for BS16971.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21302603..21303497 13..911 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:22:48 Download gff for BS16971.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21295703..21296597 13..911 99   Plus

BS16971.5prime Sequence

854 bp (802 high quality bases) assembled on 2007-05-15

> BS16971.5prime
GAAGTTATCAGTCGACATGGACACGGACGACAACTCAAGTGGCACTATTA
CCGGCAGTGATCTTGGCCAGCGTTATCGGCATGCAGGCGACTTAACTGGC
GAAGCCCCAACCAGACCCTTCGCCGAGATCAGCATTACGGTTCCATGGGG
GCACATATCCGGCAAGTGGTACGGTCCGCAGAACGTCCAACCAATTTTAG
GACTGCACGGGTGGCAGGATAATGCGGGAACCTTTGATCGCCTGATGCCG
CTGCTGTCGCCGGACGTGGCATTCCTCGCGATCGATCTTCCTGGTCACGG
GCTATCGTCCCGACTGCCTGATGGCTGCTACTACAACTCCGTGGATAATC
TGTATGTGATCCGCCTGATCATGAAGCAGTACAAGTGGGAGAAAGTGTCC
CTGGTTGGACACTCAATGTCGTCCATTATTTGCTTTGTTTTCGCCGCGGT
CTTTCCGGACAAGGTGGACATGATCATTGGGATTGATGCCCTGAAACCTC
ATCAGCGTCCGTATCCGTCGGTTATTAGGACCATGGAAACCCGTTTGGAC
GAGTTCTTGCGTGAAGACGAAAGGAACCGGAGTAAGAACGAGCCGCCGAG
CTACACCTACGATGAACTTATTGAGAGGGTCTATATCGGCACCTTCCATT
CGGTGAACAAGGAGCACTGCAAGCATTTAATGGCTCGCAACATCGGCAAG
TCGGAGAAGTACCCGGACAAGTACTTCTTCTGCCGCGATAGGCGTCTCAA
GTTTTACAACTATGCCATCGGGTCCCAGGAGCTGTGTGTGGAAATGGCCA
ATCGGATTACATGTCCTTACTTGTTCATCAAGGCCGCCCAGTCCTCGTAT
TTCG

BS16971.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:34:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-PB 1047 CG11309-RB 1..838 17..854 4190 100 Plus
CG11309-PA 1077 CG11309-RA 132..868 118..854 3685 100 Plus
CG11309-PA 1077 CG11309-RA 1..102 17..118 510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-RF 2125 CG11309-RF 259..1096 17..854 4190 100 Plus
CG11309-RE 1206 CG11309-RE 35..872 17..854 4190 100 Plus
CG11309-RD 1536 CG11309-RD 161..998 17..854 4190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21302814..21303549 854..119 3680 100 Minus
3L 28110227 3L 21303910..21304011 118..17 510 100 Minus
3L 28110227 3L 21305088..21305198 128..238 210 79.3 Plus
Blast to na_te.dros performed on 2015-02-11 02:49:18 has no hits.

BS16971.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:34:59 Download gff for BS16971.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11309-PB 1..838 17..854 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:02:00 Download gff for BS16971.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11309-RC 128..968 14..854 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:50:26 Download gff for BS16971.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11309-RD 158..998 14..854 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:50:26 Download gff for BS16971.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21302814..21303549 119..854 100 <- Minus
3L 21303910..21304014 14..118 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:02:00 Download gff for BS16971.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21295914..21296649 119..854 100 <- Minus
arm_3L 21297010..21297114 14..118 99   Minus

BS16971.complete Sequence

1079 bp assembled on 2007-05-07

GenBank Submission: FJ638224

> BS16971.complete
GAAGTTATCAGTCGACATGGACACGGACGACAACTCAAGTGGCACTATTA
CCGGCAGTGATCTTGGCCAGCGTTATCGGCATGCAGGCGACTTAACTGGC
GAAGCCCCAACCAGACCCTTCGCCGAGATCAGCATTACGGTTCCATGGGG
GCACATATCCGGCAAGTGGTACGGTCCGCAGAACGTCCAACCAATTTTAG
GACTGCACGGGTGGCAGGATAATGCGGGAACCTTTGATCGCCTGATGCCG
CTGCTGTCGCCGGACGTGGCATTCCTCGCGATCGATCTTCCTGGTCACGG
GCTATCGTCCCGACTGCCTGATGGCTGCTACTACAACTCCGTGGATAATC
TGTATGTGATCCGCCTGATCATGAAGCAGTACAAGTGGGAGAAAGTGTCC
CTGGTTGGACACTCAATGTCGTCCATTATTTGCTTTGTTTTCGCCGCGGT
CTTTCCGGACAAGGTGGACATGATCATTGGGATTGATGCCCTGAAACCTC
ATCAGCGTCCGTATCCGTCGGTTATTAGGACCATGGAAACCCGTTTGGAC
GAGTTCTTGCGTGAAGACGAAAGGAACCGGAGTAAGAACGAGCCGCCGAG
CTACACCTACGATGAACTTATTGAGAGGGTCTATATCGGCACCTTCCATT
CGGTGAACAAGGAGCACTGCAAGCATTTAATGGCTCGCAACATCGGCAAG
TCGGAGAAGTACCCGGACAAGTACTTCTTCTGCCGCGATAGGCGTCTCAA
GTTTTACAACTATGCCATCGGGTCCCAGGAGCTGTGTGTGGAAATGGCCA
ATCGGATTACATGTCCTTACTTGTTCATCAAGGCCGCCCAGTCCTCGTAT
TTCGAGGACAAGAAGTACTACGACGAGGTGCTGGATGTGCTGTTGAAGAA
GCCGAACTTTGAGTACCTGGAGGTTAATGGCTCGCACCATGTGCACATGA
ACGATCCAGAGGCCATCATTGCACCGGTCAACAACTTTATCCAGCGCTTC
GGACCGGCGGCAGCGGCTGCATCCCGCCAGAAGGCCAAGGAGGCGAAGGA
GAGCAAGCTTTAGAAGCTTTCTAGACCAT

BS16971.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-RF 1047 CG11309-PF 1..1047 17..1063 5235 100 Plus
CG11309-RE 1047 CG11309-PE 1..1047 17..1063 5235 100 Plus
CG11309-RD 1047 CG11309-PD 1..1047 17..1063 5235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-RF 2125 CG11309-RF 259..1305 17..1063 5235 100 Plus
CG11309-RE 1206 CG11309-RE 35..1081 17..1063 5235 100 Plus
CG11309-RD 1536 CG11309-RD 161..1207 17..1063 5235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:22:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21302605..21303549 1063..119 4725 100 Minus
3L 28110227 3L 21303910..21304011 118..17 510 100 Minus
3L 28110227 3L 21305088..21305198 128..238 210 79.3 Plus
Blast to na_te.dros performed on 2014-11-27 13:22:27 has no hits.

BS16971.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:04 Download gff for BS16971.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RB 1..1047 17..1063 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:02 Download gff for BS16971.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RB 251..1302 14..1067 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:04 Download gff for BS16971.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RC 131..1177 17..1063 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:04 Download gff for BS16971.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RB 251..1302 14..1067 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:00 Download gff for BS16971.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RD 161..1207 17..1063 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:00 Download gff for BS16971.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21302605..21303549 119..1063 100 <- Minus
3L 21303910..21304011 17..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:04 Download gff for BS16971.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21295705..21296649 119..1063 100 <- Minus
arm_3L 21297010..21297111 17..118 100   Minus

BS16971.pep Sequence

Translation from 16 to 1062

> BS16971.pep
MDTDDNSSGTITGSDLGQRYRHAGDLTGEAPTRPFAEISITVPWGHISGK
WYGPQNVQPILGLHGWQDNAGTFDRLMPLLSPDVAFLAIDLPGHGLSSRL
PDGCYYNSVDNLYVIRLIMKQYKWEKVSLVGHSMSSIICFVFAAVFPDKV
DMIIGIDALKPHQRPYPSVIRTMETRLDEFLREDERNRSKNEPPSYTYDE
LIERVYIGTFHSVNKEHCKHLMARNIGKSEKYPDKYFFCRDRRLKFYNYA
IGSQELCVEMANRITCPYLFIKAAQSSYFEDKKYYDEVLDVLLKKPNFEY
LEVNGSHHVHMNDPEAIIAPVNNFIQRFGPAAAAASRQKAKEAKESKL*

BS16971.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-PF 348 CG11309-PF 1..348 1..348 1864 100 Plus
CG11309-PE 348 CG11309-PE 1..348 1..348 1864 100 Plus
CG11309-PD 348 CG11309-PD 1..348 1..348 1864 100 Plus
CG11309-PC 348 CG11309-PC 1..348 1..348 1864 100 Plus
CG11309-PB 348 CG11309-PB 1..348 1..348 1864 100 Plus