Clone Sequence Records
BS16972.3prime Sequence
854 bp (807 high quality bases) assembled on 2007-05-15
> BS16972.3prime
ATGGTCTAGAAAGCTTTTATTCCATATAGGGTTGGACATCATGCTCCATG
CGAGCGGCCTCAGTTTCTGCACCCACGGCGCAGGCTAGTAGTGAGTTGAC
CGTCTGCTCCTCACCTGCCTTGTAGACGTATCCATTAGCCTTGTCGATGT
GATTGCGCAAGCGGAGCATGCTGTCCGTGCTGAAGACGTCCAGCAGTTGG
AACGAAACGAGAGCGTAGTCCTCCACCATGGAGCAGATGGCTGCATTCAG
TTTTCGATACTTGCGCATGGCGGGATCATCGTCCAGTTTGTCCAGCAGAT
ACTTGAGGTCCAGGACGTCCGTATAATAGTCCACGTTAAAGTGTAACTTG
GTCTCGTGCTTCTTTAGCAGATCGGCCTTGGAAAGCACATTAACGTGGGG
TAGACTCATCCGCAACATGGTGTTCAATGCCATCAGCAAAGTGGCAATGA
ATTTGGCAGGCTCCGAGCAGTAATGGGAATCTATAAGGTTAACGGTGACC
AGGCTATATCTTTCACGCTCCAAACGCTCGAAAATCCGGGCCATAGCGTT
GTGATGGGTATATAGCTCAACTTGGCCGGGACAGTCGAACAGGAAGTAGT
TGTAAGTGGCGCTTAGTTTGCGCAGTGCCGGCAACAGCCAATCCTCCAAA
TGGTCGGCCAGATACTCAGCGCAGTGCATTAGAGCTCCGTTTGGTCCCAG
CTTCAGGTGCTCCATGCAATCCTCCACAGTGATTAGCTCCATCACACTTA
GCACCGGTTCGTAGGACATGTTTTCGTTGGCTGGATCCAGATTCACAACG
CCCACCTGACGGCCCAGTTCGCGATAGAACTTAAAGGCCTCACCGCATTA
GGTG
BS16972.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:41:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10222-PA | 924 | CG10222-RA | 87..924 | 854..17 | 4140 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:29:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10222-RB | 1332 | CG10222-RB | 88..928 | 854..14 | 4175 | 99.8 | Minus |
CG10222-RA | 1074 | CG10222-RA | 88..928 | 854..14 | 4175 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:29:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13411526..13412366 | 14..854 | 4175 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:29:51 has no hits.
BS16972.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:41:42 Download gff for
BS16972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10222-PA | 87..924 | 17..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:22:57 Download gff for
BS16972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10222-RA | 88..928 | 14..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:33 Download gff for
BS16972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10222-RA | 88..928 | 14..854 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:33 Download gff for
BS16972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13411526..13412366 | 14..854 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:22:57 Download gff for
BS16972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13404626..13405466 | 14..854 | 99 | | Plus |
BS16972.5prime Sequence
832 bp (798 high quality bases) assembled on 2007-05-15
> BS16972.5prime
GAAGTTATCAGTCGACATGATGCAAAGATTTCCGACGCAGGCGACCGTGG
AGAATCCACGTTATGGACAGCTAATCATAGGACCTCCTGGTTCTGGGAAA
ACCACCTATTGCGGTGAGGCCCTTAAGTTCTATCGCGAACTGGGCCGTCA
GGTGGGCGTTGTGAATCTGGATCCAGCCAACGAAAACATGTCCTACGAAC
CGGTGCTAAGTGTGATGGAGCTAATCACTGTGGAGGATTGCATGGAGCAC
CTGAAGCTGGGACCAAACGGAGCTCTAATGCACTGCGCTGAGTATCTGGC
CGACCATTTGGAGGATTGGCTGTTGCCGGCACTGCGCAAACTAAGCGCCA
CTTACAACTACTTCCTGTTCGACTGTCCCGGCCAAGTTGAGCTATATACC
CATCACAACGCTATGGCCCGGATTTTCGAGCGTTTGGAGCGTGAAAGATA
TAGCCTGGTCACCGTTAACCTTATAGATTCCCATTACTGCTCGGAGCCTG
CCAAATTCATTGCCACTTTGCTGATGGCATTGAACACCATGTTGCGGATG
AGTCTACCCCACGTTAATGTGCTTTCCAAGGCCGATCTGCTAAAGAAGCA
CGAGACCAAGTTACACTTTAACGTGGACTATTATACGGACGTCCTGGACC
TCAAGTATCTGCTGGACAAACTGGACGATGATCCCGCCATGCGCAAGTAT
CGAAAACTGAATGCAGCCATCTGCTCCATGGTGGAGGACTACGCTCTCGT
TTCGTTCCAACTGCTGGACGTCTTCAGCACGGACAGCATGCTCCGCTTGC
GNCATCACATCGACAAGGCTAATGGATACGTC
BS16972.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:35:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10222-PA | 924 | CG10222-RA | 1..816 | 17..832 | 4036 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:55:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10222-RB | 1332 | CG10222-RB | 2..817 | 17..832 | 4054 | 99.8 | Plus |
CG10222-RA | 1074 | CG10222-RA | 2..817 | 17..832 | 4054 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:55:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13411637..13412452 | 832..17 | 4054 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:55:57 has no hits.
BS16972.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:35:09 Download gff for
BS16972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10222-PA | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:24:18 Download gff for
BS16972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10222-RA | 2..817 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:19:10 Download gff for
BS16972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10222-RA | 2..817 | 17..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:19:10 Download gff for
BS16972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13411637..13412457 | 9..832 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:24:18 Download gff for
BS16972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13404737..13405557 | 9..832 | 99 | | Minus |
BS16972.complete Sequence
956 bp assembled on 2007-05-07
GenBank Submission: FJ638225
> BS16972.complete
GAAGTTATCAGTCGACATGATGCAAAGATTTCCGACGCAGGCGACCGTGG
AGAATCCACGTTATGGACAGCTAATCATAGGACCTCCTGGTTCTGGGAAA
ACCACCTATTGCGGTGAGGCCCTTAAGTTCTATCGCGAACTGGGCCGTCA
GGTGGGCGTTGTGAATCTGGATCCAGCCAACGAAAACATGTCCTACGAAC
CGGTGCTAAGTGTGATGGAGCTAATCACTGTGGAGGATTGCATGGAGCAC
CTGAAGCTGGGACCAAACGGAGCTCTAATGCACTGCGCTGAGTATCTGGC
CGACCATTTGGAGGATTGGCTGTTGCCGGCACTGCGCAAACTAAGCGCCA
CTTACAACTACTTCCTGTTCGACTGTCCCGGCCAAGTTGAGCTATATACC
CATCACAACGCTATGGCCCGGATTTTCGAGCGTTTGGAGCGTGAAAGATA
TAGCCTGGTCACCGTTAACCTTATAGATTCCCATTACTGCTCGGAGCCTG
CCAAATTCATTGCCACTTTGCTGATGGCATTGAACACCATGTTGCGGATG
AGTCTACCCCACGTTAATGTGCTTTCCAAGGCCGATCTGCTAAAGAAGCA
CGAGACCAAGTTACACTTTAACGTGGACTATTATACGGACGTCCTGGACC
TCAAGTATCTGCTGGACAAACTGGACGATGATCCCGCCATGCGCAAGTAT
CGAAAACTGAATGCAGCCATCTGCTCCATGGTGGAGGACTACGCTCTCGT
TTCGTTCCAACTGCTGGACGTCTTCAGCACGGACAGCATGCTCCGCTTGC
GCAATCACATCGACAAGGCTAATGGATACGTCTACAAGGCAGGTGAGGAG
CAGACGGTCAACTCACTACTAGCCTGCGCCGTGGGTGCAGAAACTGAGGC
CGCTCGCATGGAGCATGATGTCCAACCCTATATGGAATAAAAGCTTTCTA
GACCAT
BS16972.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:51:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10222-RB | 924 | CG10222-PB | 1..924 | 17..940 | 4620 | 100 | Plus |
CG10222-RA | 924 | CG10222-PA | 1..924 | 17..940 | 4620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:51:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10222-RB | 1332 | CG10222-RB | 2..928 | 17..943 | 4635 | 100 | Plus |
CG10222-RA | 1074 | CG10222-RA | 2..928 | 17..943 | 4635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:51:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13411526..13412452 | 943..17 | 4635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:51:08 has no hits.
BS16972.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:05 Download gff for
BS16972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10222-RA | 1..924 | 17..940 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:04 Download gff for
BS16972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10222-RA | 1..925 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:57 Download gff for
BS16972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10222-RA | 2..923 | 17..938 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:05 Download gff for
BS16972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10222-RA | 1..925 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:05 Download gff for
BS16972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10222-RA | 2..923 | 17..938 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:05 Download gff for
BS16972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13411531..13412452 | 17..938 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:57 Download gff for
BS16972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13404631..13405552 | 17..938 | 100 | | Minus |
BS16972.pep Sequence
Translation from 16 to 939
> BS16972.pep
MMQRFPTQATVENPRYGQLIIGPPGSGKTTYCGEALKFYRELGRQVGVVN
LDPANENMSYEPVLSVMELITVEDCMEHLKLGPNGALMHCAEYLADHLED
WLLPALRKLSATYNYFLFDCPGQVELYTHHNAMARIFERLERERYSLVTV
NLIDSHYCSEPAKFIATLLMALNTMLRMSLPHVNVLSKADLLKKHETKLH
FNVDYYTDVLDLKYLLDKLDDDPAMRKYRKLNAAICSMVEDYALVSFQLL
DVFSTDSMLRLRNHIDKANGYVYKAGEEQTVNSLLACAVGAETEAARMEH
DVQPYME*
BS16972.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10222-PB | 307 | CG10222-PB | 1..307 | 1..307 | 1610 | 100 | Plus |
CG10222-PA | 307 | CG10222-PA | 1..307 | 1..307 | 1610 | 100 | Plus |
CG2656-PA | 283 | CG2656-PA | 2..270 | 15..282 | 399 | 36.7 | Plus |
CG3704-PA | 382 | CG3704-PA | 27..209 | 19..208 | 173 | 25.3 | Plus |