Clone BS16972 Report

Search the DGRC for BS16972

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:169
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG10222-RA
Protein status:BS16972.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16972.3prime Sequence

854 bp (807 high quality bases) assembled on 2007-05-15

> BS16972.3prime
ATGGTCTAGAAAGCTTTTATTCCATATAGGGTTGGACATCATGCTCCATG
CGAGCGGCCTCAGTTTCTGCACCCACGGCGCAGGCTAGTAGTGAGTTGAC
CGTCTGCTCCTCACCTGCCTTGTAGACGTATCCATTAGCCTTGTCGATGT
GATTGCGCAAGCGGAGCATGCTGTCCGTGCTGAAGACGTCCAGCAGTTGG
AACGAAACGAGAGCGTAGTCCTCCACCATGGAGCAGATGGCTGCATTCAG
TTTTCGATACTTGCGCATGGCGGGATCATCGTCCAGTTTGTCCAGCAGAT
ACTTGAGGTCCAGGACGTCCGTATAATAGTCCACGTTAAAGTGTAACTTG
GTCTCGTGCTTCTTTAGCAGATCGGCCTTGGAAAGCACATTAACGTGGGG
TAGACTCATCCGCAACATGGTGTTCAATGCCATCAGCAAAGTGGCAATGA
ATTTGGCAGGCTCCGAGCAGTAATGGGAATCTATAAGGTTAACGGTGACC
AGGCTATATCTTTCACGCTCCAAACGCTCGAAAATCCGGGCCATAGCGTT
GTGATGGGTATATAGCTCAACTTGGCCGGGACAGTCGAACAGGAAGTAGT
TGTAAGTGGCGCTTAGTTTGCGCAGTGCCGGCAACAGCCAATCCTCCAAA
TGGTCGGCCAGATACTCAGCGCAGTGCATTAGAGCTCCGTTTGGTCCCAG
CTTCAGGTGCTCCATGCAATCCTCCACAGTGATTAGCTCCATCACACTTA
GCACCGGTTCGTAGGACATGTTTTCGTTGGCTGGATCCAGATTCACAACG
CCCACCTGACGGCCCAGTTCGCGATAGAACTTAAAGGCCTCACCGCATTA
GGTG

BS16972.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG10222-PA 924 CG10222-RA 87..924 854..17 4140 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10222-RB 1332 CG10222-RB 88..928 854..14 4175 99.8 Minus
CG10222-RA 1074 CG10222-RA 88..928 854..14 4175 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13411526..13412366 14..854 4175 99.8 Plus
Blast to na_te.dros performed on 2015-02-10 15:29:51 has no hits.

BS16972.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:41:42 Download gff for BS16972.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10222-PA 87..924 17..854 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:22:57 Download gff for BS16972.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10222-RA 88..928 14..854 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:33 Download gff for BS16972.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10222-RA 88..928 14..854 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:33 Download gff for BS16972.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13411526..13412366 14..854 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:22:57 Download gff for BS16972.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13404626..13405466 14..854 99   Plus

BS16972.5prime Sequence

832 bp (798 high quality bases) assembled on 2007-05-15

> BS16972.5prime
GAAGTTATCAGTCGACATGATGCAAAGATTTCCGACGCAGGCGACCGTGG
AGAATCCACGTTATGGACAGCTAATCATAGGACCTCCTGGTTCTGGGAAA
ACCACCTATTGCGGTGAGGCCCTTAAGTTCTATCGCGAACTGGGCCGTCA
GGTGGGCGTTGTGAATCTGGATCCAGCCAACGAAAACATGTCCTACGAAC
CGGTGCTAAGTGTGATGGAGCTAATCACTGTGGAGGATTGCATGGAGCAC
CTGAAGCTGGGACCAAACGGAGCTCTAATGCACTGCGCTGAGTATCTGGC
CGACCATTTGGAGGATTGGCTGTTGCCGGCACTGCGCAAACTAAGCGCCA
CTTACAACTACTTCCTGTTCGACTGTCCCGGCCAAGTTGAGCTATATACC
CATCACAACGCTATGGCCCGGATTTTCGAGCGTTTGGAGCGTGAAAGATA
TAGCCTGGTCACCGTTAACCTTATAGATTCCCATTACTGCTCGGAGCCTG
CCAAATTCATTGCCACTTTGCTGATGGCATTGAACACCATGTTGCGGATG
AGTCTACCCCACGTTAATGTGCTTTCCAAGGCCGATCTGCTAAAGAAGCA
CGAGACCAAGTTACACTTTAACGTGGACTATTATACGGACGTCCTGGACC
TCAAGTATCTGCTGGACAAACTGGACGATGATCCCGCCATGCGCAAGTAT
CGAAAACTGAATGCAGCCATCTGCTCCATGGTGGAGGACTACGCTCTCGT
TTCGTTCCAACTGCTGGACGTCTTCAGCACGGACAGCATGCTCCGCTTGC
GNCATCACATCGACAAGGCTAATGGATACGTC

BS16972.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10222-PA 924 CG10222-RA 1..816 17..832 4036 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10222-RB 1332 CG10222-RB 2..817 17..832 4054 99.8 Plus
CG10222-RA 1074 CG10222-RA 2..817 17..832 4054 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13411637..13412452 832..17 4054 99.8 Minus
Blast to na_te.dros performed on 2015-02-13 06:55:57 has no hits.

BS16972.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:35:09 Download gff for BS16972.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10222-PA 1..816 17..832 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:24:18 Download gff for BS16972.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10222-RA 2..817 17..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:19:10 Download gff for BS16972.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10222-RA 2..817 17..832 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:19:10 Download gff for BS16972.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13411637..13412457 9..832 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:24:18 Download gff for BS16972.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13404737..13405557 9..832 99   Minus

BS16972.complete Sequence

956 bp assembled on 2007-05-07

GenBank Submission: FJ638225

> BS16972.complete
GAAGTTATCAGTCGACATGATGCAAAGATTTCCGACGCAGGCGACCGTGG
AGAATCCACGTTATGGACAGCTAATCATAGGACCTCCTGGTTCTGGGAAA
ACCACCTATTGCGGTGAGGCCCTTAAGTTCTATCGCGAACTGGGCCGTCA
GGTGGGCGTTGTGAATCTGGATCCAGCCAACGAAAACATGTCCTACGAAC
CGGTGCTAAGTGTGATGGAGCTAATCACTGTGGAGGATTGCATGGAGCAC
CTGAAGCTGGGACCAAACGGAGCTCTAATGCACTGCGCTGAGTATCTGGC
CGACCATTTGGAGGATTGGCTGTTGCCGGCACTGCGCAAACTAAGCGCCA
CTTACAACTACTTCCTGTTCGACTGTCCCGGCCAAGTTGAGCTATATACC
CATCACAACGCTATGGCCCGGATTTTCGAGCGTTTGGAGCGTGAAAGATA
TAGCCTGGTCACCGTTAACCTTATAGATTCCCATTACTGCTCGGAGCCTG
CCAAATTCATTGCCACTTTGCTGATGGCATTGAACACCATGTTGCGGATG
AGTCTACCCCACGTTAATGTGCTTTCCAAGGCCGATCTGCTAAAGAAGCA
CGAGACCAAGTTACACTTTAACGTGGACTATTATACGGACGTCCTGGACC
TCAAGTATCTGCTGGACAAACTGGACGATGATCCCGCCATGCGCAAGTAT
CGAAAACTGAATGCAGCCATCTGCTCCATGGTGGAGGACTACGCTCTCGT
TTCGTTCCAACTGCTGGACGTCTTCAGCACGGACAGCATGCTCCGCTTGC
GCAATCACATCGACAAGGCTAATGGATACGTCTACAAGGCAGGTGAGGAG
CAGACGGTCAACTCACTACTAGCCTGCGCCGTGGGTGCAGAAACTGAGGC
CGCTCGCATGGAGCATGATGTCCAACCCTATATGGAATAAAAGCTTTCTA
GACCAT

BS16972.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG10222-RB 924 CG10222-PB 1..924 17..940 4620 100 Plus
CG10222-RA 924 CG10222-PA 1..924 17..940 4620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG10222-RB 1332 CG10222-RB 2..928 17..943 4635 100 Plus
CG10222-RA 1074 CG10222-RA 2..928 17..943 4635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13411526..13412452 943..17 4635 100 Minus
Blast to na_te.dros performed on 2014-11-27 12:51:08 has no hits.

BS16972.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:05 Download gff for BS16972.complete
Subject Subject Range Query Range Percent Splice Strand
CG10222-RA 1..924 17..940 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:04 Download gff for BS16972.complete
Subject Subject Range Query Range Percent Splice Strand
CG10222-RA 1..925 17..940 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:57 Download gff for BS16972.complete
Subject Subject Range Query Range Percent Splice Strand
CG10222-RA 2..923 17..938 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:05 Download gff for BS16972.complete
Subject Subject Range Query Range Percent Splice Strand
CG10222-RA 1..925 17..940 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:05 Download gff for BS16972.complete
Subject Subject Range Query Range Percent Splice Strand
CG10222-RA 2..923 17..938 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:05 Download gff for BS16972.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13411531..13412452 17..938 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:57 Download gff for BS16972.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13404631..13405552 17..938 100   Minus

BS16972.pep Sequence

Translation from 16 to 939

> BS16972.pep
MMQRFPTQATVENPRYGQLIIGPPGSGKTTYCGEALKFYRELGRQVGVVN
LDPANENMSYEPVLSVMELITVEDCMEHLKLGPNGALMHCAEYLADHLED
WLLPALRKLSATYNYFLFDCPGQVELYTHHNAMARIFERLERERYSLVTV
NLIDSHYCSEPAKFIATLLMALNTMLRMSLPHVNVLSKADLLKKHETKLH
FNVDYYTDVLDLKYLLDKLDDDPAMRKYRKLNAAICSMVEDYALVSFQLL
DVFSTDSMLRLRNHIDKANGYVYKAGEEQTVNSLLACAVGAETEAARMEH
DVQPYME*

BS16972.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10222-PB 307 CG10222-PB 1..307 1..307 1610 100 Plus
CG10222-PA 307 CG10222-PA 1..307 1..307 1610 100 Plus
CG2656-PA 283 CG2656-PA 2..270 15..282 399 36.7 Plus
CG3704-PA 382 CG3704-PA 27..209 19..208 173 25.3 Plus