Clone Sequence Records
BS16974.complete Sequence
2543 bp assembled on 2009-12-08
GenBank Submission: KX806297
> BS16974.complete
GAAGTTATCAGTCGACATGGAGGGTCCTGAAGTCACATTCCTTTTCCAAT
TCGGCAGCGTGCGCGATGCGGTCTGTGTGCCCGCCAACTCGCTGACCCTC
AAGACGCTCAAGGACCTGGCCTGCGATTTCATCAACACAAAGATCCCGGA
CAGTGGACTCACATACCTCTCGGAACGCATTCTCCTCTTCGTCCACGACT
ACAGCACCCCGAATGTGCTGCACATCATCAACTCGGCAGCGGAGGTGGTG
GACGAGACCCTCGTGGAAATCGTGCTGACCGCCAGTCCCATCCTGTATCC
GACCTCCGAGATGCCGACCCTCAAGCCGCACAGCCTGAATGTGCATTCCT
ACAAGGGACCGACCTTCTGTGATTTCTGCGGCGAGATGCTGTTTGGTCTG
GTGCGTCAGGGCCTCAAGTGCGACGGATGCGGCCAGAACTATCACAAGCG
GTGCGTGGTGAAAATCCCGAACAACTGCAATCGCTCCAATGACGCCACCT
CGAGGCGCTCCTTTACGCTCCAGGCGCCCCGCAGTCCGTCCGGCAGCTCC
CAGCAGTCGCTCGTCTCCACGGAGGACTCGACCGGACGGAACGACTCGAG
CAGCTCACTGAATATCCCCGGTCGCCATCAAAGGACTCATTCGTCGGGCA
GCCGGAATGGACTGATGGTGCTCCGTATTCCGCACACATTCATGGTGCAC
ACGTACGGCATACCCACGGTGTGCCAGCTGTGCAAGAAACTGCTCAAAGG
ACTCTTCAAGCAGGGCCTCCAGTGCCGGGACTGCCAGTACAATACGCACA
AGAAGTGCATGGACAAGGTGCCCCACGATTGCACGGGTGAGGCGCAACTG
AGCCAGCTGCAGATCCAGGCCGGCGCCAAGGAGCGAGACAACTTCTTTCG
CGAGGAGTTCGACGACAGTGACGGCGACGACGGATCCGAGTATGGCAAGT
ACAAGTCGGCCATGTCGAGCGGTGTCAATCTGGTGGCCGGAAGACCTAGA
GAAGCACCGAAAGCCCTCACAAATGCCCACAACTCGCCGCCCGAACTGGT
CAATGGAGGACTGGTCGATGATTCCAGCGTTAGTGGTGGTGAGACCAGTA
AGTCCAGTAGCGACGGCCAGTCGGAGCAGTCGCAATCCTCCACCTCCTCC
TCGCCGAGTGCCAATATCCCGCTGATGAGGATCGTCCAGTCCGTCAAGCA
CACCAAGAAACGCGGTGGGCAGGCCCTTAAGGAGGGCTGGCTGGTGCACT
ACACCTCGCTGGACAAGGCAGTAAAGCGCTACTACTGGCGTCTGGACTCC
AAGACCATCACACTGTTCGTCTCGGAACAGGGTAGCAAGTACCACAAGGA
GCTGCCGCTGGCGGAGCTTCTGTCGATCGAAAGCCACCTCGGAGATCCAC
GGCCGGAGTGCAACTACTGCTTCGAGCTGCGCCTACCCAATCTCAGCTAC
TTCGTTGGACAGGATCCGCAGGTGGGCGCCAAGGAGGAGCAGGCCGTCAG
ATTACCCCCGCCGGACAGTGGAATTGGCAGTGACATTGCAAAGAGTTGGG
AGACTAGCATCCGGCAGGCCTTCATGCACGTCACCAATACGCAATGCTGC
GAATCGGAGGAGCAGGTCCAGGATATGGGCCAGCTGTACCAGATCTTTCC
GGACGAGGTGCTCGGTTCCGGGCAGTTTGGTGTGGTCTACGGCGGCGTGC
ACAAGAAGACGCAACGCGAGGTGGCCATCAAGGTGATCGACAAATTGCGC
TTTCCCACCAAACAGGAGGCGCAGCTGAAGAACGAGGTGGCCATCCTGCA
GAACATCTCGCATTGCGGCGTCGTCAATCTGGAGCGAATGTTCGAGACTC
CGGAGCGGATCTTTGTGGTGATGGAAAAGCTCAAGGGCGACATGCTGGAG
ATGATCCTGTCGCATGCGAGGGGCCGCCTGAGTGAACGGGTGACCAAGTT
CCTGATCACCCAGATCCTGATTGCCCTCAAGTACCTGCATTCGCAAAACA
TAGTCCACTGCGATCTGAAGCCGGAGAACGTGCTGCTCTCCTCGGACGCC
GAGTTTCCGCAGGTGAAGCTCTGCGACTTTGGCTACGCCCGGATCATCGG
CGAGAAGTCCTTCCGGCGCTCGGTGGTTGGCACTCCGGCCTATCTGGCAC
CGGAGGTGCTCCGTAACAAGGGCTACAATCGATCTCTAGACATGTGGAGC
GTGGGCGTCATCATATACGTGAGCCTGAGCGGCACATTCCCGTTCAACGA
GGAGGAGGACATCAACGACCAGATCCAGAACGCGGCCTTCATGTATCCAC
CAAATCCCTGGAAGGAGATCTCCTCCAATGCCATCGACCTGATCAACAAC
CTGCTGCAGGTGAAGCAGCGCAAGCGGTACACGGTGGACAAGAGTCTGCT
GCACTACTGGCTGCAGGACAAGCAGACGTACCGCGATCTCCGGAACCTGG
AGGCCCAGGTGGGTGCCGGCCGGTATCTGACCCACGAGGCGGATGATCTG
CGCTGGGACTGCGCGGGCGACATGTGAAAGCTTTCTAGACCAT
BS16974.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:27:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PKD-RG | 2721 | CG7125-PG | 1..2511 | 17..2527 | 12555 | 100 | Plus |
PKD-RF | 2511 | CG7125-PF | 1..2511 | 17..2527 | 12555 | 100 | Plus |
PKD-RE | 2511 | CG7125-PE | 1..2511 | 17..2527 | 12555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:27:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PKD-RG | 3634 | CG7125-RG | 536..3047 | 16..2527 | 12560 | 100 | Plus |
PKD-RF | 3708 | CG7125-RF | 610..3121 | 16..2527 | 12560 | 100 | Plus |
PKD-RE | 3611 | CG7125-RE | 513..3024 | 16..2527 | 12560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:27:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18304928..18305910 | 1592..610 | 4915 | 100 | Minus |
3R | 32079331 | 3R | 18304132..18304869 | 2330..1593 | 3690 | 100 | Minus |
3R | 32079331 | 3R | 18303866..18304063 | 2527..2330 | 990 | 100 | Minus |
3R | 32079331 | 3R | 18306619..18306804 | 610..425 | 930 | 100 | Minus |
3R | 32079331 | 3R | 18307457..18307603 | 287..141 | 735 | 100 | Minus |
3R | 32079331 | 3R | 18306877..18307015 | 426..288 | 695 | 100 | Minus |
3R | 32079331 | 3R | 18308982..18309108 | 142..16 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:27:21 has no hits.
BS16974.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:27 Download gff for
BS16974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PKD-RC | 546..3055 | 17..2526 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:32 Download gff for
BS16974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PKD-RE | 514..3023 | 17..2526 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:26:42 Download gff for
BS16974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PKD-RC | 546..3055 | 17..2526 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:18 Download gff for
BS16974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PKD-RE | 514..3023 | 17..2526 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:18 Download gff for
BS16974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18306878..18307015 | 288..425 | 100 | <- | Minus |
3R | 18307457..18307601 | 143..287 | 100 | <- | Minus |
3R | 18304928..18305909 | 611..1592 | 100 | <- | Minus |
3R | 18306619..18306803 | 426..610 | 100 | <- | Minus |
3R | 18308982..18309107 | 17..142 | 100 | | Minus |
3R | 18303867..18304062 | 2331..2526 | 100 | <- | Minus |
3R | 18304132..18304869 | 1593..2330 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:32 Download gff for
BS16974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14132341..14132525 | 426..610 | 100 | <- | Minus |
arm_3R | 14129589..14129784 | 2331..2526 | 100 | <- | Minus |
arm_3R | 14132600..14132737 | 288..425 | 100 | <- | Minus |
arm_3R | 14133179..14133323 | 143..287 | 100 | <- | Minus |
arm_3R | 14134704..14134829 | 17..142 | 100 | | Minus |
arm_3R | 14129854..14130591 | 1593..2330 | 100 | <- | Minus |
arm_3R | 14130650..14131631 | 611..1592 | 100 | <- | Minus |
BS16974.3prime Sequence
883 bp (841 high quality bases) assembled on 2007-05-15
> BS16974.3prime
ATGGTCTAGAAAGCTTTCACATGTCGCCCGCGCAGTCCCAGCGCAGATCA
TCCGCCTCGTGGGTCAGATACCGGCCGGCACCCACCTGGGCCTCCAGGTT
CCGGAGATCGCGGTACGTCTGCTTGTCCTGCAGCCAGTAGTGCAGCAGAC
TCTTGTCCACCGTGTACCGCTTGCGCTGCTTCACCTGCAGCAGGTTGTTG
ATCAGGTCGATGGCATTGGAGGAGATCTCCTTCCAGGGATTTGGTGGATA
CATGAAGGCCGCGTTCTGGATCTGGTCGTTGATGTCCTCCTCCTCGTTGA
ACGGGAATGTGCCGCTCAGGCTCACGTATATGATGACGCCCACGCTCCAC
ATGTCTAGAGATCGATTGTAGCCCTTGTTACGGAGCACCTCCGGTGCCAG
ATAGGCCGGAGTGCCAACCACCGAGCGCCGGAAGGACTTCTCGCCGATGA
TCCGGGCGTAGCCAAAGTCGCAGAGCTTCACCTGCGGAAACTCGGCGTCC
GAGGAGAGCAGCACGTTCTCCGGCTTCAGATCGCAGTGGACTATGTTTTG
CGAATGCAGGTACTTGAGGGCAATCAGGATCTGGGTGATCAGGAACTTGG
TCACCCGTTCACTCAGGCGGCCCCTCGCATGCGACAGGATCATCTCCAGC
ATGTCGCCCTTGAGCTTTTCCATCACCACAAAGATCCGCTCCGGAGTCTC
GAACATTCGCTCCAGATTGACGACGCCGCAATGCGAGATGTTCTGCAGGA
TGGCCACCTCGTTCTTCAGCTGCGCCTCCTGTTTGGTGGGAAAGCGCAAT
TTGTCGATCACCTTGATGGCCACCTCGCGTTGCGTCTTCTTGTGCACGCC
GCCGTAGACCACACCAAACTGCCCGGAAACGAG
BS16974.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7125-PA | 2511 | PKD-RA | 1650..2511 | 878..17 | 4310 | 100 | Minus |
CG7125-PB | 2511 | PKD-RB | 1650..2511 | 878..17 | 4310 | 100 | Minus |
CG7125-PC | 2511 | PKD-RC | 1650..2511 | 878..17 | 4310 | 100 | Minus |
CG7125-PD | 2511 | PKD-RD | 1650..2511 | 878..17 | 4310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:15:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PKD-RG | 3634 | CG7125-RG | 2181..3047 | 883..17 | 4320 | 99.9 | Minus |
PKD-RF | 3708 | CG7125-RF | 2255..3121 | 883..17 | 4320 | 99.9 | Minus |
PKD-RE | 3611 | CG7125-RE | 2158..3024 | 883..17 | 4320 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:15:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18304132..18304801 | 214..883 | 3335 | 99.9 | Plus |
3R | 32079331 | 3R | 18303866..18304063 | 17..214 | 990 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:15:19 has no hits.
BS16974.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:38:45 Download gff for
BS16974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7125-PD | 1645..2511 | 17..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:29:09 Download gff for
BS16974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PKD-RE | 2158..3027 | 12..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:40:11 Download gff for
BS16974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PKD-RE | 2158..3027 | 12..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:40:11 Download gff for
BS16974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18303863..18304062 | 12..213 | 98 | <- | Plus |
3R | 18304132..18304801 | 214..883 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:29:09 Download gff for
BS16974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14129585..14129784 | 12..213 | 98 | <- | Plus |
arm_3R | 14129854..14130523 | 214..883 | 99 | | Plus |
BS16974.5prime Sequence
743 bp (733 high quality bases) assembled on 2007-05-15
> BS16974.5prime
GAAGTTATCAGTCGACATGGAGGGTCCTGAAGTCACATTCCTTTTCCAAT
TCGGCAGCGTGCGCGATGCGGTCTGTGTGCCCGCCAACTCGCTGACCCTC
AAGACGCTCAAGGACCTGGCCTGCGATTTCATCAACACAAAGATCCCGGA
CAGTGGACTCACATACCTCTCGGAACGCATTCTCCTCTTCGTCCACGACT
ACAGCACCCCGAATGTGCTGCACATCATCAACTCGGCAGCGGAGGTGGTG
GACGAGACCCTCGTGGAAATCGTGCTGACCGCCAGTCCCATCCTGTATCC
GACCTCCGAGATGCCGACCCTCAAGCCGCACAGCCTGAATGTGCATTCCT
ACAAGGGACCGACCTTCTGTGATTTCTGCGGCGAGATGCTGTTTGGTCTG
GTGCGTCAGGGCCTCAAGTGCGACGGATGCGGCCAGAACTATCACAAGCG
GTGCGTGGTGAAAATCCCGAACAACTGCAATCGCTCCAATGACGCCACCT
CGAGGCGCTCCTTTACGCTCCAGGCGCCCCGCAGTCCGTCCGGCAGCTCC
CAGCAGTCGCTCGTCTCCACGGAGGACTCGACCGGACGGAACGACTCGAG
CAGCTCACTGAATATCCCCGGTCGCCATCAAAGGACTCATTCGTCGGGCA
GCCGGAATGGACTGATGGTGCTCCGTATTCCGCACACATTCATGGTGCAC
ACGTACGGCATACCCACGGTGTGCCAGCTGTGCAAGAAACTGC
BS16974.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:32:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7125-PA | 2511 | PKD-RA | 1..727 | 17..743 | 3635 | 100 | Plus |
CG7125-PB | 2511 | PKD-RB | 1..727 | 17..743 | 3635 | 100 | Plus |
CG7125-PC | 2511 | PKD-RC | 1..727 | 17..743 | 3635 | 100 | Plus |
CG7125-PD | 2511 | PKD-RD | 1..727 | 17..743 | 3635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:02:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PKD-RG | 3634 | CG7125-RG | 536..1263 | 16..743 | 3640 | 100 | Plus |
PKD-RF | 3708 | CG7125-RF | 610..1337 | 16..743 | 3640 | 100 | Plus |
PKD-RE | 3611 | CG7125-RE | 513..1240 | 16..743 | 3640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:02:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18306619..18306804 | 610..425 | 930 | 100 | Minus |
3R | 32079331 | 3R | 18307457..18307603 | 287..141 | 735 | 100 | Minus |
3R | 32079331 | 3R | 18306877..18307015 | 426..288 | 695 | 100 | Minus |
3R | 32079331 | 3R | 18305777..18305910 | 743..610 | 670 | 100 | Minus |
3R | 32079331 | 3R | 18308982..18309108 | 142..16 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:02:38 has no hits.
BS16974.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:32:24 Download gff for
BS16974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7125-PD | 1..727 | 17..743 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:19:45 Download gff for
BS16974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PKD-RE | 508..1240 | 11..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:07 Download gff for
BS16974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PKD-RE | 508..1240 | 11..743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:07 Download gff for
BS16974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18305777..18305909 | 611..743 | 100 | <- | Minus |
3R | 18306619..18306803 | 426..610 | 100 | <- | Minus |
3R | 18306878..18307015 | 288..425 | 100 | <- | Minus |
3R | 18307457..18307601 | 143..287 | 100 | <- | Minus |
3R | 18308982..18309113 | 11..142 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:19:45 Download gff for
BS16974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14133179..14133323 | 143..287 | 100 | <- | Minus |
arm_3R | 14131499..14131631 | 611..743 | 100 | <- | Minus |
arm_3R | 14132341..14132525 | 426..610 | 100 | <- | Minus |
arm_3R | 14132600..14132737 | 288..425 | 100 | <- | Minus |
arm_3R | 14134704..14134835 | 11..142 | 97 | | Minus |
BS16974.pep Sequence
Translation from 16 to 2526
> BS16974.pep
MEGPEVTFLFQFGSVRDAVCVPANSLTLKTLKDLACDFINTKIPDSGLTY
LSERILLFVHDYSTPNVLHIINSAAEVVDETLVEIVLTASPILYPTSEMP
TLKPHSLNVHSYKGPTFCDFCGEMLFGLVRQGLKCDGCGQNYHKRCVVKI
PNNCNRSNDATSRRSFTLQAPRSPSGSSQQSLVSTEDSTGRNDSSSSLNI
PGRHQRTHSSGSRNGLMVLRIPHTFMVHTYGIPTVCQLCKKLLKGLFKQG
LQCRDCQYNTHKKCMDKVPHDCTGEAQLSQLQIQAGAKERDNFFREEFDD
SDGDDGSEYGKYKSAMSSGVNLVAGRPREAPKALTNAHNSPPELVNGGLV
DDSSVSGGETSKSSSDGQSEQSQSSTSSSPSANIPLMRIVQSVKHTKKRG
GQALKEGWLVHYTSLDKAVKRYYWRLDSKTITLFVSEQGSKYHKELPLAE
LLSIESHLGDPRPECNYCFELRLPNLSYFVGQDPQVGAKEEQAVRLPPPD
SGIGSDIAKSWETSIRQAFMHVTNTQCCESEEQVQDMGQLYQIFPDEVLG
SGQFGVVYGGVHKKTQREVAIKVIDKLRFPTKQEAQLKNEVAILQNISHC
GVVNLERMFETPERIFVVMEKLKGDMLEMILSHARGRLSERVTKFLITQI
LIALKYLHSQNIVHCDLKPENVLLSSDAEFPQVKLCDFGYARIIGEKSFR
RSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEEEDIN
DQIQNAAFMYPPNPWKEISSNAIDLINNLLQVKQRKRYTVDKSLLHYWLQ
DKQTYRDLRNLEAQVGAGRYLTHEADDLRWDCAGDM*
BS16974.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:30:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PKD-PG | 906 | CG7125-PG | 1..836 | 1..836 | 4393 | 100 | Plus |
PKD-PF | 836 | CG7125-PF | 1..836 | 1..836 | 4393 | 100 | Plus |
PKD-PE | 836 | CG7125-PE | 1..836 | 1..836 | 4393 | 100 | Plus |
PKD-PD | 836 | CG7125-PD | 1..836 | 1..836 | 4393 | 100 | Plus |
PKD-PC | 836 | CG7125-PC | 1..836 | 1..836 | 4393 | 100 | Plus |