Clone BS16974 Report

Search the DGRC for BS16974

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:169
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptPKD-RC
Protein status:BS16974.pep: full length peptide match
Sequenced Size:2543

Clone Sequence Records

BS16974.complete Sequence

2543 bp assembled on 2009-12-08

GenBank Submission: KX806297

> BS16974.complete
GAAGTTATCAGTCGACATGGAGGGTCCTGAAGTCACATTCCTTTTCCAAT
TCGGCAGCGTGCGCGATGCGGTCTGTGTGCCCGCCAACTCGCTGACCCTC
AAGACGCTCAAGGACCTGGCCTGCGATTTCATCAACACAAAGATCCCGGA
CAGTGGACTCACATACCTCTCGGAACGCATTCTCCTCTTCGTCCACGACT
ACAGCACCCCGAATGTGCTGCACATCATCAACTCGGCAGCGGAGGTGGTG
GACGAGACCCTCGTGGAAATCGTGCTGACCGCCAGTCCCATCCTGTATCC
GACCTCCGAGATGCCGACCCTCAAGCCGCACAGCCTGAATGTGCATTCCT
ACAAGGGACCGACCTTCTGTGATTTCTGCGGCGAGATGCTGTTTGGTCTG
GTGCGTCAGGGCCTCAAGTGCGACGGATGCGGCCAGAACTATCACAAGCG
GTGCGTGGTGAAAATCCCGAACAACTGCAATCGCTCCAATGACGCCACCT
CGAGGCGCTCCTTTACGCTCCAGGCGCCCCGCAGTCCGTCCGGCAGCTCC
CAGCAGTCGCTCGTCTCCACGGAGGACTCGACCGGACGGAACGACTCGAG
CAGCTCACTGAATATCCCCGGTCGCCATCAAAGGACTCATTCGTCGGGCA
GCCGGAATGGACTGATGGTGCTCCGTATTCCGCACACATTCATGGTGCAC
ACGTACGGCATACCCACGGTGTGCCAGCTGTGCAAGAAACTGCTCAAAGG
ACTCTTCAAGCAGGGCCTCCAGTGCCGGGACTGCCAGTACAATACGCACA
AGAAGTGCATGGACAAGGTGCCCCACGATTGCACGGGTGAGGCGCAACTG
AGCCAGCTGCAGATCCAGGCCGGCGCCAAGGAGCGAGACAACTTCTTTCG
CGAGGAGTTCGACGACAGTGACGGCGACGACGGATCCGAGTATGGCAAGT
ACAAGTCGGCCATGTCGAGCGGTGTCAATCTGGTGGCCGGAAGACCTAGA
GAAGCACCGAAAGCCCTCACAAATGCCCACAACTCGCCGCCCGAACTGGT
CAATGGAGGACTGGTCGATGATTCCAGCGTTAGTGGTGGTGAGACCAGTA
AGTCCAGTAGCGACGGCCAGTCGGAGCAGTCGCAATCCTCCACCTCCTCC
TCGCCGAGTGCCAATATCCCGCTGATGAGGATCGTCCAGTCCGTCAAGCA
CACCAAGAAACGCGGTGGGCAGGCCCTTAAGGAGGGCTGGCTGGTGCACT
ACACCTCGCTGGACAAGGCAGTAAAGCGCTACTACTGGCGTCTGGACTCC
AAGACCATCACACTGTTCGTCTCGGAACAGGGTAGCAAGTACCACAAGGA
GCTGCCGCTGGCGGAGCTTCTGTCGATCGAAAGCCACCTCGGAGATCCAC
GGCCGGAGTGCAACTACTGCTTCGAGCTGCGCCTACCCAATCTCAGCTAC
TTCGTTGGACAGGATCCGCAGGTGGGCGCCAAGGAGGAGCAGGCCGTCAG
ATTACCCCCGCCGGACAGTGGAATTGGCAGTGACATTGCAAAGAGTTGGG
AGACTAGCATCCGGCAGGCCTTCATGCACGTCACCAATACGCAATGCTGC
GAATCGGAGGAGCAGGTCCAGGATATGGGCCAGCTGTACCAGATCTTTCC
GGACGAGGTGCTCGGTTCCGGGCAGTTTGGTGTGGTCTACGGCGGCGTGC
ACAAGAAGACGCAACGCGAGGTGGCCATCAAGGTGATCGACAAATTGCGC
TTTCCCACCAAACAGGAGGCGCAGCTGAAGAACGAGGTGGCCATCCTGCA
GAACATCTCGCATTGCGGCGTCGTCAATCTGGAGCGAATGTTCGAGACTC
CGGAGCGGATCTTTGTGGTGATGGAAAAGCTCAAGGGCGACATGCTGGAG
ATGATCCTGTCGCATGCGAGGGGCCGCCTGAGTGAACGGGTGACCAAGTT
CCTGATCACCCAGATCCTGATTGCCCTCAAGTACCTGCATTCGCAAAACA
TAGTCCACTGCGATCTGAAGCCGGAGAACGTGCTGCTCTCCTCGGACGCC
GAGTTTCCGCAGGTGAAGCTCTGCGACTTTGGCTACGCCCGGATCATCGG
CGAGAAGTCCTTCCGGCGCTCGGTGGTTGGCACTCCGGCCTATCTGGCAC
CGGAGGTGCTCCGTAACAAGGGCTACAATCGATCTCTAGACATGTGGAGC
GTGGGCGTCATCATATACGTGAGCCTGAGCGGCACATTCCCGTTCAACGA
GGAGGAGGACATCAACGACCAGATCCAGAACGCGGCCTTCATGTATCCAC
CAAATCCCTGGAAGGAGATCTCCTCCAATGCCATCGACCTGATCAACAAC
CTGCTGCAGGTGAAGCAGCGCAAGCGGTACACGGTGGACAAGAGTCTGCT
GCACTACTGGCTGCAGGACAAGCAGACGTACCGCGATCTCCGGAACCTGG
AGGCCCAGGTGGGTGCCGGCCGGTATCTGACCCACGAGGCGGATGATCTG
CGCTGGGACTGCGCGGGCGACATGTGAAAGCTTTCTAGACCAT

BS16974.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
PKD-RG 2721 CG7125-PG 1..2511 17..2527 12555 100 Plus
PKD-RF 2511 CG7125-PF 1..2511 17..2527 12555 100 Plus
PKD-RE 2511 CG7125-PE 1..2511 17..2527 12555 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
PKD-RG 3634 CG7125-RG 536..3047 16..2527 12560 100 Plus
PKD-RF 3708 CG7125-RF 610..3121 16..2527 12560 100 Plus
PKD-RE 3611 CG7125-RE 513..3024 16..2527 12560 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:27:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18304928..18305910 1592..610 4915 100 Minus
3R 32079331 3R 18304132..18304869 2330..1593 3690 100 Minus
3R 32079331 3R 18303866..18304063 2527..2330 990 100 Minus
3R 32079331 3R 18306619..18306804 610..425 930 100 Minus
3R 32079331 3R 18307457..18307603 287..141 735 100 Minus
3R 32079331 3R 18306877..18307015 426..288 695 100 Minus
3R 32079331 3R 18308982..18309108 142..16 635 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:27:21 has no hits.

BS16974.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:27 Download gff for BS16974.complete
Subject Subject Range Query Range Percent Splice Strand
PKD-RC 546..3055 17..2526 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:32 Download gff for BS16974.complete
Subject Subject Range Query Range Percent Splice Strand
PKD-RE 514..3023 17..2526 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:26:42 Download gff for BS16974.complete
Subject Subject Range Query Range Percent Splice Strand
PKD-RC 546..3055 17..2526 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:18 Download gff for BS16974.complete
Subject Subject Range Query Range Percent Splice Strand
PKD-RE 514..3023 17..2526 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:18 Download gff for BS16974.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18306878..18307015 288..425 100 <- Minus
3R 18307457..18307601 143..287 100 <- Minus
3R 18304928..18305909 611..1592 100 <- Minus
3R 18306619..18306803 426..610 100 <- Minus
3R 18308982..18309107 17..142 100   Minus
3R 18303867..18304062 2331..2526 100 <- Minus
3R 18304132..18304869 1593..2330 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:32 Download gff for BS16974.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14132341..14132525 426..610 100 <- Minus
arm_3R 14129589..14129784 2331..2526 100 <- Minus
arm_3R 14132600..14132737 288..425 100 <- Minus
arm_3R 14133179..14133323 143..287 100 <- Minus
arm_3R 14134704..14134829 17..142 100   Minus
arm_3R 14129854..14130591 1593..2330 100 <- Minus
arm_3R 14130650..14131631 611..1592 100 <- Minus

BS16974.3prime Sequence

883 bp (841 high quality bases) assembled on 2007-05-15

> BS16974.3prime
ATGGTCTAGAAAGCTTTCACATGTCGCCCGCGCAGTCCCAGCGCAGATCA
TCCGCCTCGTGGGTCAGATACCGGCCGGCACCCACCTGGGCCTCCAGGTT
CCGGAGATCGCGGTACGTCTGCTTGTCCTGCAGCCAGTAGTGCAGCAGAC
TCTTGTCCACCGTGTACCGCTTGCGCTGCTTCACCTGCAGCAGGTTGTTG
ATCAGGTCGATGGCATTGGAGGAGATCTCCTTCCAGGGATTTGGTGGATA
CATGAAGGCCGCGTTCTGGATCTGGTCGTTGATGTCCTCCTCCTCGTTGA
ACGGGAATGTGCCGCTCAGGCTCACGTATATGATGACGCCCACGCTCCAC
ATGTCTAGAGATCGATTGTAGCCCTTGTTACGGAGCACCTCCGGTGCCAG
ATAGGCCGGAGTGCCAACCACCGAGCGCCGGAAGGACTTCTCGCCGATGA
TCCGGGCGTAGCCAAAGTCGCAGAGCTTCACCTGCGGAAACTCGGCGTCC
GAGGAGAGCAGCACGTTCTCCGGCTTCAGATCGCAGTGGACTATGTTTTG
CGAATGCAGGTACTTGAGGGCAATCAGGATCTGGGTGATCAGGAACTTGG
TCACCCGTTCACTCAGGCGGCCCCTCGCATGCGACAGGATCATCTCCAGC
ATGTCGCCCTTGAGCTTTTCCATCACCACAAAGATCCGCTCCGGAGTCTC
GAACATTCGCTCCAGATTGACGACGCCGCAATGCGAGATGTTCTGCAGGA
TGGCCACCTCGTTCTTCAGCTGCGCCTCCTGTTTGGTGGGAAAGCGCAAT
TTGTCGATCACCTTGATGGCCACCTCGCGTTGCGTCTTCTTGTGCACGCC
GCCGTAGACCACACCAAACTGCCCGGAAACGAG

BS16974.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7125-PA 2511 PKD-RA 1650..2511 878..17 4310 100 Minus
CG7125-PB 2511 PKD-RB 1650..2511 878..17 4310 100 Minus
CG7125-PC 2511 PKD-RC 1650..2511 878..17 4310 100 Minus
CG7125-PD 2511 PKD-RD 1650..2511 878..17 4310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
PKD-RG 3634 CG7125-RG 2181..3047 883..17 4320 99.9 Minus
PKD-RF 3708 CG7125-RF 2255..3121 883..17 4320 99.9 Minus
PKD-RE 3611 CG7125-RE 2158..3024 883..17 4320 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18304132..18304801 214..883 3335 99.9 Plus
3R 32079331 3R 18303866..18304063 17..214 990 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:15:19 has no hits.

BS16974.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:38:45 Download gff for BS16974.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7125-PD 1645..2511 17..883 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:29:09 Download gff for BS16974.3prime
Subject Subject Range Query Range Percent Splice Strand
PKD-RE 2158..3027 12..883 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:40:11 Download gff for BS16974.3prime
Subject Subject Range Query Range Percent Splice Strand
PKD-RE 2158..3027 12..883 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:40:11 Download gff for BS16974.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18303863..18304062 12..213 98 <- Plus
3R 18304132..18304801 214..883 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:29:09 Download gff for BS16974.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14129585..14129784 12..213 98 <- Plus
arm_3R 14129854..14130523 214..883 99   Plus

BS16974.5prime Sequence

743 bp (733 high quality bases) assembled on 2007-05-15

> BS16974.5prime
GAAGTTATCAGTCGACATGGAGGGTCCTGAAGTCACATTCCTTTTCCAAT
TCGGCAGCGTGCGCGATGCGGTCTGTGTGCCCGCCAACTCGCTGACCCTC
AAGACGCTCAAGGACCTGGCCTGCGATTTCATCAACACAAAGATCCCGGA
CAGTGGACTCACATACCTCTCGGAACGCATTCTCCTCTTCGTCCACGACT
ACAGCACCCCGAATGTGCTGCACATCATCAACTCGGCAGCGGAGGTGGTG
GACGAGACCCTCGTGGAAATCGTGCTGACCGCCAGTCCCATCCTGTATCC
GACCTCCGAGATGCCGACCCTCAAGCCGCACAGCCTGAATGTGCATTCCT
ACAAGGGACCGACCTTCTGTGATTTCTGCGGCGAGATGCTGTTTGGTCTG
GTGCGTCAGGGCCTCAAGTGCGACGGATGCGGCCAGAACTATCACAAGCG
GTGCGTGGTGAAAATCCCGAACAACTGCAATCGCTCCAATGACGCCACCT
CGAGGCGCTCCTTTACGCTCCAGGCGCCCCGCAGTCCGTCCGGCAGCTCC
CAGCAGTCGCTCGTCTCCACGGAGGACTCGACCGGACGGAACGACTCGAG
CAGCTCACTGAATATCCCCGGTCGCCATCAAAGGACTCATTCGTCGGGCA
GCCGGAATGGACTGATGGTGCTCCGTATTCCGCACACATTCATGGTGCAC
ACGTACGGCATACCCACGGTGTGCCAGCTGTGCAAGAAACTGC

BS16974.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7125-PA 2511 PKD-RA 1..727 17..743 3635 100 Plus
CG7125-PB 2511 PKD-RB 1..727 17..743 3635 100 Plus
CG7125-PC 2511 PKD-RC 1..727 17..743 3635 100 Plus
CG7125-PD 2511 PKD-RD 1..727 17..743 3635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
PKD-RG 3634 CG7125-RG 536..1263 16..743 3640 100 Plus
PKD-RF 3708 CG7125-RF 610..1337 16..743 3640 100 Plus
PKD-RE 3611 CG7125-RE 513..1240 16..743 3640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18306619..18306804 610..425 930 100 Minus
3R 32079331 3R 18307457..18307603 287..141 735 100 Minus
3R 32079331 3R 18306877..18307015 426..288 695 100 Minus
3R 32079331 3R 18305777..18305910 743..610 670 100 Minus
3R 32079331 3R 18308982..18309108 142..16 635 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:02:38 has no hits.

BS16974.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:32:24 Download gff for BS16974.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7125-PD 1..727 17..743 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:19:45 Download gff for BS16974.5prime
Subject Subject Range Query Range Percent Splice Strand
PKD-RE 508..1240 11..743 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:07 Download gff for BS16974.5prime
Subject Subject Range Query Range Percent Splice Strand
PKD-RE 508..1240 11..743 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:07 Download gff for BS16974.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18305777..18305909 611..743 100 <- Minus
3R 18306619..18306803 426..610 100 <- Minus
3R 18306878..18307015 288..425 100 <- Minus
3R 18307457..18307601 143..287 100 <- Minus
3R 18308982..18309113 11..142 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:19:45 Download gff for BS16974.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14133179..14133323 143..287 100 <- Minus
arm_3R 14131499..14131631 611..743 100 <- Minus
arm_3R 14132341..14132525 426..610 100 <- Minus
arm_3R 14132600..14132737 288..425 100 <- Minus
arm_3R 14134704..14134835 11..142 97   Minus

BS16974.pep Sequence

Translation from 16 to 2526

> BS16974.pep
MEGPEVTFLFQFGSVRDAVCVPANSLTLKTLKDLACDFINTKIPDSGLTY
LSERILLFVHDYSTPNVLHIINSAAEVVDETLVEIVLTASPILYPTSEMP
TLKPHSLNVHSYKGPTFCDFCGEMLFGLVRQGLKCDGCGQNYHKRCVVKI
PNNCNRSNDATSRRSFTLQAPRSPSGSSQQSLVSTEDSTGRNDSSSSLNI
PGRHQRTHSSGSRNGLMVLRIPHTFMVHTYGIPTVCQLCKKLLKGLFKQG
LQCRDCQYNTHKKCMDKVPHDCTGEAQLSQLQIQAGAKERDNFFREEFDD
SDGDDGSEYGKYKSAMSSGVNLVAGRPREAPKALTNAHNSPPELVNGGLV
DDSSVSGGETSKSSSDGQSEQSQSSTSSSPSANIPLMRIVQSVKHTKKRG
GQALKEGWLVHYTSLDKAVKRYYWRLDSKTITLFVSEQGSKYHKELPLAE
LLSIESHLGDPRPECNYCFELRLPNLSYFVGQDPQVGAKEEQAVRLPPPD
SGIGSDIAKSWETSIRQAFMHVTNTQCCESEEQVQDMGQLYQIFPDEVLG
SGQFGVVYGGVHKKTQREVAIKVIDKLRFPTKQEAQLKNEVAILQNISHC
GVVNLERMFETPERIFVVMEKLKGDMLEMILSHARGRLSERVTKFLITQI
LIALKYLHSQNIVHCDLKPENVLLSSDAEFPQVKLCDFGYARIIGEKSFR
RSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEEEDIN
DQIQNAAFMYPPNPWKEISSNAIDLINNLLQVKQRKRYTVDKSLLHYWLQ
DKQTYRDLRNLEAQVGAGRYLTHEADDLRWDCAGDM*

BS16974.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
PKD-PG 906 CG7125-PG 1..836 1..836 4393 100 Plus
PKD-PF 836 CG7125-PF 1..836 1..836 4393 100 Plus
PKD-PE 836 CG7125-PE 1..836 1..836 4393 100 Plus
PKD-PD 836 CG7125-PD 1..836 1..836 4393 100 Plus
PKD-PC 836 CG7125-PC 1..836 1..836 4393 100 Plus