Clone BS16975 Report

Search the DGRC for BS16975

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:169
Well:75
Vector:pDNR-Dual
Associated Gene/Transcriptscra-RC
Protein status:BS16975.pep: full length peptide match
Sequenced Size:1883

Clone Sequence Records

BS16975.complete Sequence

1883 bp assembled on 2009-12-08

GenBank Submission: KX805380

> BS16975.complete
GAAGTTATCAGTCGACATGGACCCGTTTACTCAGCACATGCTCGAGAAGG
CGGAACAGCGCAGTCGCGCCCTTGGCATCAGCAATGCCAGCAAATTTCCG
CTCGTCGAGTGCAGCGTTCCAAGCTCCTCCGCCACCTCCGCATCCGGCGG
GGATGCTGGGGTCCTGGCACCGAGGAGCCGGTCGCCTGGAGGCCAGAGCG
CGGCTAGCGGCGGCGGCAAGGTCGTTACGTTGGGAAAGGCCACGCTGGAG
GCGTCGCCGGCGAAGCCGCTGCGTCACTATACGGCGGTAAACAAGGAAAA
CTTGGATATGGGCATAGAGATAAACATAACCACGGACAAGCCAATTGGGG
TGCAAGTTGAGATTCAGGAGCAGGAGGTGACAGATGACGAAGAGCAGGCG
GAAGGAGGTGCGCTAAATCCCCTGCTGGAGGCGGAACCAGTAAACCAGCC
CCTAGCCAGGCTAAGGGACACTTCCCGCAGCCGACTGCAACGCATGGGTG
CCCTGTACTCAAACACGGACGATCTATCCTCCCCAATCCACCGAACCGAG
GGGCAGTTCCATGTGACAACGGGTGAGGAAGAGGACTGCGGCAACCGTAG
CAGCAGGCAACCAAAACAACGGTTGGGCAAACTGGCCGCCTTGGCGGATA
CCATCAATCAGTGGGAGGATGACACGTCGCACCACGAAGTGCACAGACTG
CTCGAAGCACCTCCACCGAAACCGCATTTGTCCAGTCGAAGGGCCGAGAA
GGGTCCAGCTCCACTGCCACCCAAGAAGGATGAAGTCGACGAGGCAAGCA
GGACCAAGCAGCTGAAGTGGGATCCCAAGGTATTGAGCTCTCTGGAGGCA
CAAGGTTTTCAGCGCCGCGAATCATCGACCATTAAACACACATATGATTA
TGCCAAACAGGAAGAGGCGGCCCCAGCCTCCAAAGTGGAAGATGCGGTAT
TAACTGCCAAGCCGCCAGTGCCGCAGAAATCAACGACGGTCAGCCAGGTC
GCCAAGAACTTTGCATCTTCCGCCCCAGCGCCTAAGCCCGCACCAGCGCC
TGCTGTTAGTGTGAAGTCCGGCTTGGTTTCCGGACGGGCGGCTCTCTTTG
AAAACAAGGGAACCGGAGGACAGTCGCAAGGCCTACGCAACCAGAAGGAT
CCTTGTGAGCTGTCGCTGAAGGAGCGGATGAAGCTGTTCGAAACGGGCAA
CAACAAAGCGATGTTGCCGATGGCGCCAATAGGATCTGCTCCCAGTATTA
CCCAAATCCGAGCGGAAGAGGTGAAACAACATTTAGCTGCAATGCATCCG
GTGACTGCTGCCGCAGCTACTACCGTGGTTGCAGCAACCAAGCCGAAACA
GGAAAACAAGCTGCGTGACAAGGTGGCCGCTTTGGTGGCAAATGCGCAAT
CAAGTGCAGAGACGCGTATCAAGGACATTGATCGCCAAAGGCAGGAAGAC
ATGCAGATTATTTCTAATCGCTTTAACAAACAAAAGGAGCTCTTTGACAA
TCAACCATCCGATAGTTCTGTGGCTGCTCAAGCTCGACCTCCCGCGCCAG
CTCCCAGCAGAGTAGTGCGGCCCATGCCACCGCCTCCACCACCGCCCATC
GCTGCTCTCTCGCCCGGACTGGCCAGCAGCAAGAGGCGATCACCTGGTGA
TGCGCCCACCACTGACGAGGATTCGAAGCGAGCCCGCAAATCGCATTCGG
ATCGTCTGTATCCCGCCCTGTCCGACCTCGACTCCAGCGGTGACAACTGC
TGCGCCGCCGAAACTGCCTCCGCTACGGATGACAGCCATCAACAGGACGA
GGAGGAAACCGAAAGGTGCGCTGAAAAATGCTATTCCTGCTTGCTATTTC
TGCTCTGCATCGAGTAGAAGCTTTCTAGACCAT

BS16975.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
scra-RC 1851 CG2092-PC 1..1851 17..1867 9255 100 Plus
scra-RB 3720 CG2092-PB 1..1803 17..1819 9000 99.9 Plus
scra-RA 3639 CG2092-PA 812..1722 909..1819 4540 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
scra-RC 2260 CG2092-RC 326..2176 17..1867 9255 100 Plus
scra-RB 4311 CG2092-RB 326..2128 17..1819 9000 99.9 Plus
scra-RA 4147 CG2092-RA 1054..1964 909..1819 4540 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7590945..7591873 349..1277 4645 100 Plus
2R 25286936 2R 7591938..7592303 1278..1643 1830 100 Plus
2R 25286936 2R 7590565..7590884 32..351 1600 100 Plus
2R 25286936 2R 7592358..7592585 1640..1867 1125 99.6 Plus
Blast to na_te.dros performed on 2014-11-28 02:28:33 has no hits.

BS16975.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:27 Download gff for BS16975.complete
Subject Subject Range Query Range Percent Splice Strand
scra-RC 326..2176 17..1867 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:05 Download gff for BS16975.complete
Subject Subject Range Query Range Percent Splice Strand
scra-RC 326..2176 17..1867 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:03:47 Download gff for BS16975.complete
Subject Subject Range Query Range Percent Splice Strand
scra-RC 326..2176 17..1867 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:14 Download gff for BS16975.complete
Subject Subject Range Query Range Percent Splice Strand
scra-RC 326..2176 17..1867 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:14 Download gff for BS16975.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7590444..7590461 17..34 100 -> Plus
2R 7590568..7590882 35..349 100 -> Plus
2R 7590946..7591873 350..1277 100 -> Plus
2R 7591938..7592303 1278..1643 100 -> Plus
2R 7592362..7592585 1644..1867 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:05 Download gff for BS16975.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3479867..3480090 1644..1867 100   Plus
arm_2R 3477949..3477966 17..34 100 -> Plus
arm_2R 3478073..3478387 35..349 100 -> Plus
arm_2R 3478451..3479378 350..1277 100 -> Plus
arm_2R 3479443..3479808 1278..1643 100 -> Plus

BS16975.3prime Sequence

861 bp (777 high quality bases) assembled on 2007-05-15

> BS16975.3prime
ATGGTCTAGAAAGCTTCTACTCGATGCAGAGCAGAAATAGCAAGCAGGAA
TAGCATTTTTCAGCGCACCTTTCGGTTTCCTCCTCGTCCTGTTGATGGCT
GTCATCCGTAGCGGAGGCAGTTTCGGCGGCGCAGCAGTTGTCACCGCTGG
AGTCGAGGTCGGACAGGGCGGGATACAGACGATCCGAATGCGATTTGCGG
GCTCGCTTCGAATCCTCGTCAGTGGTGGGCGCATCACCAGGTGATCGCCT
CTTGCTGCTGGCCAGTCCGGGCGAGAGAGCAGCGATGGGCGGTGGTGGAG
GCGGTGGCATGGGCCGCACTACTCTGCTGGGAGCTGGCGCGGGAGGTCGA
GCTTGAGCAGCCACAGAACTATCGGATGGTTGATTGTCAAAGAGCTCCTT
TTGTTTGTTAAAGCGATTAGAAATAATCTGCATGTCTTCCTGCCTTTGGC
GATCAATGTCCTTGATACGCGTCTCTGCACTTGATTGCGCATTTGCCACC
AAAGCGGCCACCTTGTCACGCAGCTTGTTTTCCTGTTTCGGCTTGGTTGC
TGCAACCACGGTAGTAGCTGCGGCAGCAGTCACCGGATGCATTGCAGCTA
AATGTTGTTTCACCTCTTCCGCTCGGATTTGGGTAATACTGGGAGCAGAT
CCTATTGGCGCCATCGGCAACATCGCTTTGTTGTTGCCCGTTTCGAACAG
CTTCATCCGCTCCTTCAGCGACAGCTCACAAGGATCCTTCTGGTTGCGTA
GGCCTTGCGACTGTCCTCCGGTTCCCTTGTTTTCAAAGAGAGCCGCCCGT
CCGGAAAACAAGCCGGACTTCACACTAACAGCAGGCGCTGGTGCGGGCTT
AGGCGCTGGGG

BS16975.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG2092-PC 1851 scra-RC 1007..1851 861..17 4200 99.8 Minus
CG2092-PB 3720 scra-RB 1007..1799 861..69 3940 99.8 Minus
CG2092-PA 3639 scra-RA 926..1718 861..69 3940 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
scra-RC 2260 CG2092-RC 1332..2176 861..17 4210 99.9 Minus
scra-RA 4147 CG2092-RA 1168..1964 861..65 3955 99.7 Minus
scra-RB 4311 CG2092-RB 1332..2128 861..65 3955 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7591938..7592303 606..241 1830 100 Minus
2R 25286936 2R 7591619..7591873 861..607 1260 99.6 Minus
2R 25286936 2R 7592358..7592585 244..17 1125 99.6 Minus
Blast to na_te.dros performed on 2015-02-12 00:25:34 has no hits.

BS16975.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:38:56 Download gff for BS16975.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2092-PC 1007..1851 17..861 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:45 Download gff for BS16975.3prime
Subject Subject Range Query Range Percent Splice Strand
scra-RC 1332..2180 11..861 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:04:21 Download gff for BS16975.3prime
Subject Subject Range Query Range Percent Splice Strand
scra-RC 1332..2180 11..861 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:04:21 Download gff for BS16975.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7591619..7591873 607..861 99 -> Minus
2R 7591938..7592303 241..606 100 -> Minus
2R 7592362..7592589 11..240 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:45 Download gff for BS16975.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3479124..3479378 607..861 99 -> Minus
arm_2R 3479443..3479808 241..606 100 -> Minus
arm_2R 3479867..3480094 11..240 98   Minus

BS16975.5prime Sequence

897 bp (746 high quality bases) assembled on 2007-05-15

> BS16975.5prime
GAAGTTATCAGTCGACATGGACCCGTTTACTCAGCACATGCTCGAGAAGG
CGGAACAGCGCAGTCGCGCCCTTGGCATCAGCAATGCCAGCAAATTTCCG
CTCGTCGAGTGCAGCGTTCCAAGCTCCTCCGCCACCTCCGCATCCGGCGG
GGATGCTGGGGTCCTGGCACCGAGGAGCCGGTCGCCTGGAGGCCAGAGCG
CGGCTAGCGGCGGCGGCAAGGTCGTTACGTTGGGAAAGGCCACGCTGGAG
GCGTCGCCGGCGAAGCCGCTGCGTCACTATACGGCGGTAAACAAGGAAAA
CTTGGATATGGGCATAGAGATAAACATAACCACGGACAAGCCAATTGGGG
TGCAAGTTGAGATTCAGGAGCAGGAGGTGACAGATGACGAAGAGCAGGCG
GAAGGAGGTGCGCTAAATCCCCTGCTGGAGGCGGAACCAGTAAACCAGCC
CCTAGCCAGGCTAAGGGACACTTCCCGCAGCCGACTGCAACGCATGGGTG
CCCTGTACTCAAACACGGACGATCTATCCTCCCCAATCCACCGAACCGAG
GGGCAGTTCCATGTGACAACGGGTGAGGAAGAGGACTGCGGCAACCGTAG
CAGCAGGCAACCAAAACAACGGTTGGGCAAACTGGCCGCCTTGGCGGATA
CCATCAATCAGTGGGAGGATGACACGTCGCACCACGAAGTGCACAGACTG
CTCGAAGCACCTCCACCGAAACCGCATTTGTCCAGTCGAAGGGCCGAGAA
NGGTCCAGCTCCACTGCCACCCAAGAAGGATGAAGTCGACGAGGCAAGCA
GGACCAAGCAGCTGAAGTGGGATCCAAGGTATTGAGCTCTCTGGAGGCAC
AAGGTTTTCAGCGCCGCGAATCATCGACCATTAAACACACATATGAT

BS16975.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG2092-PB 3720 scra-RB 1..809 17..825 4026 99.8 Plus
CG2092-PC 1851 scra-RC 1..809 17..825 4026 99.8 Plus
CG2092-PA 3639 scra-RA 1..809 17..825 4026 99.8 Plus
CG2092-PB 3720 scra-RB 809..882 824..897 370 100 Plus
CG2092-PC 1851 scra-RC 809..882 824..897 370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
scra-RC 2260 CG2092-RC 326..1207 17..897 4374 99.8 Plus
scra-RB 4311 CG2092-RB 326..1207 17..897 4374 99.8 Plus
scra-RA 4147 CG2092-RA 243..1051 17..825 4034 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:52:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7590945..7591494 349..897 2689 99.6 Plus
2R 25286936 2R 7590565..7590884 32..351 1600 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:52:24 has no hits.

BS16975.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:32:34 Download gff for BS16975.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2092-PA 1..819 17..836 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:38 Download gff for BS16975.5prime
Subject Subject Range Query Range Percent Splice Strand
scra-RB 318..1207 9..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:45 Download gff for BS16975.5prime
Subject Subject Range Query Range Percent Splice Strand
scra-RB 318..1207 9..897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:45 Download gff for BS16975.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7590568..7590882 35..349 100 -> Plus
2R 7590946..7591494 350..897 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:38 Download gff for BS16975.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3478073..3478387 35..349 100 -> Plus
arm_2R 3478451..3478999 350..897 99   Plus

BS16975.pep Sequence

Translation from 16 to 1866

> BS16975.pep
MDPFTQHMLEKAEQRSRALGISNASKFPLVECSVPSSSATSASGGDAGVL
APRSRSPGGQSAASGGGKVVTLGKATLEASPAKPLRHYTAVNKENLDMGI
EINITTDKPIGVQVEIQEQEVTDDEEQAEGGALNPLLEAEPVNQPLARLR
DTSRSRLQRMGALYSNTDDLSSPIHRTEGQFHVTTGEEEDCGNRSSRQPK
QRLGKLAALADTINQWEDDTSHHEVHRLLEAPPPKPHLSSRRAEKGPAPL
PPKKDEVDEASRTKQLKWDPKVLSSLEAQGFQRRESSTIKHTYDYAKQEE
AAPASKVEDAVLTAKPPVPQKSTTVSQVAKNFASSAPAPKPAPAPAVSVK
SGLVSGRAALFENKGTGGQSQGLRNQKDPCELSLKERMKLFETGNNKAML
PMAPIGSAPSITQIRAEEVKQHLAAMHPVTAAAATTVVAATKPKQENKLR
DKVAALVANAQSSAETRIKDIDRQRQEDMQIISNRFNKQKELFDNQPSDS
SVAAQARPPAPAPSRVVRPMPPPPPPPIAALSPGLASSKRRSPGDAPTTD
EDSKRARKSHSDRLYPALSDLDSSGDNCCAAETASATDDSHQQDEEETER
CAEKCYSCLLFLLCIE*

BS16975.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
scra-PC 616 CG2092-PC 1..616 1..616 3153 100 Plus
scra-PB 1239 CG2092-PB 1..604 1..604 3066 99.3 Plus
scra-PA 1212 CG2092-PA 1..577 1..604 2893 94.9 Plus