Clone Sequence Records
BS16975.complete Sequence
1883 bp assembled on 2009-12-08
GenBank Submission: KX805380
> BS16975.complete
GAAGTTATCAGTCGACATGGACCCGTTTACTCAGCACATGCTCGAGAAGG
CGGAACAGCGCAGTCGCGCCCTTGGCATCAGCAATGCCAGCAAATTTCCG
CTCGTCGAGTGCAGCGTTCCAAGCTCCTCCGCCACCTCCGCATCCGGCGG
GGATGCTGGGGTCCTGGCACCGAGGAGCCGGTCGCCTGGAGGCCAGAGCG
CGGCTAGCGGCGGCGGCAAGGTCGTTACGTTGGGAAAGGCCACGCTGGAG
GCGTCGCCGGCGAAGCCGCTGCGTCACTATACGGCGGTAAACAAGGAAAA
CTTGGATATGGGCATAGAGATAAACATAACCACGGACAAGCCAATTGGGG
TGCAAGTTGAGATTCAGGAGCAGGAGGTGACAGATGACGAAGAGCAGGCG
GAAGGAGGTGCGCTAAATCCCCTGCTGGAGGCGGAACCAGTAAACCAGCC
CCTAGCCAGGCTAAGGGACACTTCCCGCAGCCGACTGCAACGCATGGGTG
CCCTGTACTCAAACACGGACGATCTATCCTCCCCAATCCACCGAACCGAG
GGGCAGTTCCATGTGACAACGGGTGAGGAAGAGGACTGCGGCAACCGTAG
CAGCAGGCAACCAAAACAACGGTTGGGCAAACTGGCCGCCTTGGCGGATA
CCATCAATCAGTGGGAGGATGACACGTCGCACCACGAAGTGCACAGACTG
CTCGAAGCACCTCCACCGAAACCGCATTTGTCCAGTCGAAGGGCCGAGAA
GGGTCCAGCTCCACTGCCACCCAAGAAGGATGAAGTCGACGAGGCAAGCA
GGACCAAGCAGCTGAAGTGGGATCCCAAGGTATTGAGCTCTCTGGAGGCA
CAAGGTTTTCAGCGCCGCGAATCATCGACCATTAAACACACATATGATTA
TGCCAAACAGGAAGAGGCGGCCCCAGCCTCCAAAGTGGAAGATGCGGTAT
TAACTGCCAAGCCGCCAGTGCCGCAGAAATCAACGACGGTCAGCCAGGTC
GCCAAGAACTTTGCATCTTCCGCCCCAGCGCCTAAGCCCGCACCAGCGCC
TGCTGTTAGTGTGAAGTCCGGCTTGGTTTCCGGACGGGCGGCTCTCTTTG
AAAACAAGGGAACCGGAGGACAGTCGCAAGGCCTACGCAACCAGAAGGAT
CCTTGTGAGCTGTCGCTGAAGGAGCGGATGAAGCTGTTCGAAACGGGCAA
CAACAAAGCGATGTTGCCGATGGCGCCAATAGGATCTGCTCCCAGTATTA
CCCAAATCCGAGCGGAAGAGGTGAAACAACATTTAGCTGCAATGCATCCG
GTGACTGCTGCCGCAGCTACTACCGTGGTTGCAGCAACCAAGCCGAAACA
GGAAAACAAGCTGCGTGACAAGGTGGCCGCTTTGGTGGCAAATGCGCAAT
CAAGTGCAGAGACGCGTATCAAGGACATTGATCGCCAAAGGCAGGAAGAC
ATGCAGATTATTTCTAATCGCTTTAACAAACAAAAGGAGCTCTTTGACAA
TCAACCATCCGATAGTTCTGTGGCTGCTCAAGCTCGACCTCCCGCGCCAG
CTCCCAGCAGAGTAGTGCGGCCCATGCCACCGCCTCCACCACCGCCCATC
GCTGCTCTCTCGCCCGGACTGGCCAGCAGCAAGAGGCGATCACCTGGTGA
TGCGCCCACCACTGACGAGGATTCGAAGCGAGCCCGCAAATCGCATTCGG
ATCGTCTGTATCCCGCCCTGTCCGACCTCGACTCCAGCGGTGACAACTGC
TGCGCCGCCGAAACTGCCTCCGCTACGGATGACAGCCATCAACAGGACGA
GGAGGAAACCGAAAGGTGCGCTGAAAAATGCTATTCCTGCTTGCTATTTC
TGCTCTGCATCGAGTAGAAGCTTTCTAGACCAT
BS16975.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:28:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scra-RC | 1851 | CG2092-PC | 1..1851 | 17..1867 | 9255 | 100 | Plus |
scra-RB | 3720 | CG2092-PB | 1..1803 | 17..1819 | 9000 | 99.9 | Plus |
scra-RA | 3639 | CG2092-PA | 812..1722 | 909..1819 | 4540 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:28:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scra-RC | 2260 | CG2092-RC | 326..2176 | 17..1867 | 9255 | 100 | Plus |
scra-RB | 4311 | CG2092-RB | 326..2128 | 17..1819 | 9000 | 99.9 | Plus |
scra-RA | 4147 | CG2092-RA | 1054..1964 | 909..1819 | 4540 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:28:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7590945..7591873 | 349..1277 | 4645 | 100 | Plus |
2R | 25286936 | 2R | 7591938..7592303 | 1278..1643 | 1830 | 100 | Plus |
2R | 25286936 | 2R | 7590565..7590884 | 32..351 | 1600 | 100 | Plus |
2R | 25286936 | 2R | 7592358..7592585 | 1640..1867 | 1125 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:28:33 has no hits.
BS16975.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:27 Download gff for
BS16975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scra-RC | 326..2176 | 17..1867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:05 Download gff for
BS16975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scra-RC | 326..2176 | 17..1867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:03:47 Download gff for
BS16975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scra-RC | 326..2176 | 17..1867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:14 Download gff for
BS16975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scra-RC | 326..2176 | 17..1867 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:14 Download gff for
BS16975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7590444..7590461 | 17..34 | 100 | -> | Plus |
2R | 7590568..7590882 | 35..349 | 100 | -> | Plus |
2R | 7590946..7591873 | 350..1277 | 100 | -> | Plus |
2R | 7591938..7592303 | 1278..1643 | 100 | -> | Plus |
2R | 7592362..7592585 | 1644..1867 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:05 Download gff for
BS16975.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3479867..3480090 | 1644..1867 | 100 | | Plus |
arm_2R | 3477949..3477966 | 17..34 | 100 | -> | Plus |
arm_2R | 3478073..3478387 | 35..349 | 100 | -> | Plus |
arm_2R | 3478451..3479378 | 350..1277 | 100 | -> | Plus |
arm_2R | 3479443..3479808 | 1278..1643 | 100 | -> | Plus |
BS16975.3prime Sequence
861 bp (777 high quality bases) assembled on 2007-05-15
> BS16975.3prime
ATGGTCTAGAAAGCTTCTACTCGATGCAGAGCAGAAATAGCAAGCAGGAA
TAGCATTTTTCAGCGCACCTTTCGGTTTCCTCCTCGTCCTGTTGATGGCT
GTCATCCGTAGCGGAGGCAGTTTCGGCGGCGCAGCAGTTGTCACCGCTGG
AGTCGAGGTCGGACAGGGCGGGATACAGACGATCCGAATGCGATTTGCGG
GCTCGCTTCGAATCCTCGTCAGTGGTGGGCGCATCACCAGGTGATCGCCT
CTTGCTGCTGGCCAGTCCGGGCGAGAGAGCAGCGATGGGCGGTGGTGGAG
GCGGTGGCATGGGCCGCACTACTCTGCTGGGAGCTGGCGCGGGAGGTCGA
GCTTGAGCAGCCACAGAACTATCGGATGGTTGATTGTCAAAGAGCTCCTT
TTGTTTGTTAAAGCGATTAGAAATAATCTGCATGTCTTCCTGCCTTTGGC
GATCAATGTCCTTGATACGCGTCTCTGCACTTGATTGCGCATTTGCCACC
AAAGCGGCCACCTTGTCACGCAGCTTGTTTTCCTGTTTCGGCTTGGTTGC
TGCAACCACGGTAGTAGCTGCGGCAGCAGTCACCGGATGCATTGCAGCTA
AATGTTGTTTCACCTCTTCCGCTCGGATTTGGGTAATACTGGGAGCAGAT
CCTATTGGCGCCATCGGCAACATCGCTTTGTTGTTGCCCGTTTCGAACAG
CTTCATCCGCTCCTTCAGCGACAGCTCACAAGGATCCTTCTGGTTGCGTA
GGCCTTGCGACTGTCCTCCGGTTCCCTTGTTTTCAAAGAGAGCCGCCCGT
CCGGAAAACAAGCCGGACTTCACACTAACAGCAGGCGCTGGTGCGGGCTT
AGGCGCTGGGG
BS16975.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:38:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2092-PC | 1851 | scra-RC | 1007..1851 | 861..17 | 4200 | 99.8 | Minus |
CG2092-PB | 3720 | scra-RB | 1007..1799 | 861..69 | 3940 | 99.8 | Minus |
CG2092-PA | 3639 | scra-RA | 926..1718 | 861..69 | 3940 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:25:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scra-RC | 2260 | CG2092-RC | 1332..2176 | 861..17 | 4210 | 99.9 | Minus |
scra-RA | 4147 | CG2092-RA | 1168..1964 | 861..65 | 3955 | 99.7 | Minus |
scra-RB | 4311 | CG2092-RB | 1332..2128 | 861..65 | 3955 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:25:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7591938..7592303 | 606..241 | 1830 | 100 | Minus |
2R | 25286936 | 2R | 7591619..7591873 | 861..607 | 1260 | 99.6 | Minus |
2R | 25286936 | 2R | 7592358..7592585 | 244..17 | 1125 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:25:34 has no hits.
BS16975.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:38:56 Download gff for
BS16975.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2092-PC | 1007..1851 | 17..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:45 Download gff for
BS16975.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scra-RC | 1332..2180 | 11..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:04:21 Download gff for
BS16975.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scra-RC | 1332..2180 | 11..861 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:04:21 Download gff for
BS16975.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7591619..7591873 | 607..861 | 99 | -> | Minus |
2R | 7591938..7592303 | 241..606 | 100 | -> | Minus |
2R | 7592362..7592589 | 11..240 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:45 Download gff for
BS16975.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3479124..3479378 | 607..861 | 99 | -> | Minus |
arm_2R | 3479443..3479808 | 241..606 | 100 | -> | Minus |
arm_2R | 3479867..3480094 | 11..240 | 98 | | Minus |
BS16975.5prime Sequence
897 bp (746 high quality bases) assembled on 2007-05-15
> BS16975.5prime
GAAGTTATCAGTCGACATGGACCCGTTTACTCAGCACATGCTCGAGAAGG
CGGAACAGCGCAGTCGCGCCCTTGGCATCAGCAATGCCAGCAAATTTCCG
CTCGTCGAGTGCAGCGTTCCAAGCTCCTCCGCCACCTCCGCATCCGGCGG
GGATGCTGGGGTCCTGGCACCGAGGAGCCGGTCGCCTGGAGGCCAGAGCG
CGGCTAGCGGCGGCGGCAAGGTCGTTACGTTGGGAAAGGCCACGCTGGAG
GCGTCGCCGGCGAAGCCGCTGCGTCACTATACGGCGGTAAACAAGGAAAA
CTTGGATATGGGCATAGAGATAAACATAACCACGGACAAGCCAATTGGGG
TGCAAGTTGAGATTCAGGAGCAGGAGGTGACAGATGACGAAGAGCAGGCG
GAAGGAGGTGCGCTAAATCCCCTGCTGGAGGCGGAACCAGTAAACCAGCC
CCTAGCCAGGCTAAGGGACACTTCCCGCAGCCGACTGCAACGCATGGGTG
CCCTGTACTCAAACACGGACGATCTATCCTCCCCAATCCACCGAACCGAG
GGGCAGTTCCATGTGACAACGGGTGAGGAAGAGGACTGCGGCAACCGTAG
CAGCAGGCAACCAAAACAACGGTTGGGCAAACTGGCCGCCTTGGCGGATA
CCATCAATCAGTGGGAGGATGACACGTCGCACCACGAAGTGCACAGACTG
CTCGAAGCACCTCCACCGAAACCGCATTTGTCCAGTCGAAGGGCCGAGAA
NGGTCCAGCTCCACTGCCACCCAAGAAGGATGAAGTCGACGAGGCAAGCA
GGACCAAGCAGCTGAAGTGGGATCCAAGGTATTGAGCTCTCTGGAGGCAC
AAGGTTTTCAGCGCCGCGAATCATCGACCATTAAACACACATATGAT
BS16975.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:32:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2092-PB | 3720 | scra-RB | 1..809 | 17..825 | 4026 | 99.8 | Plus |
CG2092-PC | 1851 | scra-RC | 1..809 | 17..825 | 4026 | 99.8 | Plus |
CG2092-PA | 3639 | scra-RA | 1..809 | 17..825 | 4026 | 99.8 | Plus |
CG2092-PB | 3720 | scra-RB | 809..882 | 824..897 | 370 | 100 | Plus |
CG2092-PC | 1851 | scra-RC | 809..882 | 824..897 | 370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:52:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scra-RC | 2260 | CG2092-RC | 326..1207 | 17..897 | 4374 | 99.8 | Plus |
scra-RB | 4311 | CG2092-RB | 326..1207 | 17..897 | 4374 | 99.8 | Plus |
scra-RA | 4147 | CG2092-RA | 243..1051 | 17..825 | 4034 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:52:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7590945..7591494 | 349..897 | 2689 | 99.6 | Plus |
2R | 25286936 | 2R | 7590565..7590884 | 32..351 | 1600 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:52:24 has no hits.
BS16975.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:32:34 Download gff for
BS16975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2092-PA | 1..819 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:38 Download gff for
BS16975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scra-RB | 318..1207 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:45 Download gff for
BS16975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scra-RB | 318..1207 | 9..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:45 Download gff for
BS16975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7590568..7590882 | 35..349 | 100 | -> | Plus |
2R | 7590946..7591494 | 350..897 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:38 Download gff for
BS16975.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3478073..3478387 | 35..349 | 100 | -> | Plus |
arm_2R | 3478451..3478999 | 350..897 | 99 | | Plus |
BS16975.pep Sequence
Translation from 16 to 1866
> BS16975.pep
MDPFTQHMLEKAEQRSRALGISNASKFPLVECSVPSSSATSASGGDAGVL
APRSRSPGGQSAASGGGKVVTLGKATLEASPAKPLRHYTAVNKENLDMGI
EINITTDKPIGVQVEIQEQEVTDDEEQAEGGALNPLLEAEPVNQPLARLR
DTSRSRLQRMGALYSNTDDLSSPIHRTEGQFHVTTGEEEDCGNRSSRQPK
QRLGKLAALADTINQWEDDTSHHEVHRLLEAPPPKPHLSSRRAEKGPAPL
PPKKDEVDEASRTKQLKWDPKVLSSLEAQGFQRRESSTIKHTYDYAKQEE
AAPASKVEDAVLTAKPPVPQKSTTVSQVAKNFASSAPAPKPAPAPAVSVK
SGLVSGRAALFENKGTGGQSQGLRNQKDPCELSLKERMKLFETGNNKAML
PMAPIGSAPSITQIRAEEVKQHLAAMHPVTAAAATTVVAATKPKQENKLR
DKVAALVANAQSSAETRIKDIDRQRQEDMQIISNRFNKQKELFDNQPSDS
SVAAQARPPAPAPSRVVRPMPPPPPPPIAALSPGLASSKRRSPGDAPTTD
EDSKRARKSHSDRLYPALSDLDSSGDNCCAAETASATDDSHQQDEEETER
CAEKCYSCLLFLLCIE*
BS16975.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:05:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scra-PC | 616 | CG2092-PC | 1..616 | 1..616 | 3153 | 100 | Plus |
scra-PB | 1239 | CG2092-PB | 1..604 | 1..604 | 3066 | 99.3 | Plus |
scra-PA | 1212 | CG2092-PA | 1..577 | 1..604 | 2893 | 94.9 | Plus |