Clone Sequence Records
BS16981.3prime Sequence
264 bp (264 high quality bases) assembled on 2007-05-15
> BS16981.3prime
ATGGTCTAGAAAGCTTTCACCGTCTCAGGTACAGCGAGCTGTAGGGATAG
GCTCCGTAGGCGTAGGGCGTGGCGGCATAGACGCCGCTGGTGTAGGCAGC
ACTGTACGTGGGTGCGTAGAGTCCGCCCGAGTAGGCGTAGGGCGTGGCAG
CAACCACAGGCGAGGCCGCACTGTAGGCGGTCAGGAATTGCGGCTTGCCA
CAGGCAACGGCCAACAGGGCGAACAGGCACAGAGCGAAAAACTTGAACAT
GTCGACTGATAACT
BS16981.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:38:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32266-PA | 234 | CG32266-RA | 1..230 | 250..21 | 1150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:00:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32266-RA | 526 | CG32266-RA | 41..275 | 250..16 | 1160 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:00:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3791087..3791309 | 238..16 | 1100 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:00:32 has no hits.
BS16981.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:39:01 Download gff for
BS16981.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32266-PA | 1..234 | 17..250 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:35 Download gff for
BS16981.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32266-RA | 30..278 | 11..260 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:17 Download gff for
BS16981.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32266-RA | 30..278 | 11..260 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:17 Download gff for
BS16981.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3791087..3791309 | 16..238 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:35 Download gff for
BS16981.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3791087..3791309 | 16..238 | 99 | -> | Minus |
BS16981.5prime Sequence
264 bp (264 high quality bases) assembled on 2007-05-15
> BS16981.5prime
GAAGTTATCAGTCGACATGTTCAAGTTTTTCGCTCTGTGCCTGTTCGCCC
TGTTGGCCGTTGCCTGTGGCAAGCCGCAATTCCTGACCGCCTACAGTGCG
GCCTCGCCTGTGGTTGCTGCCACGCCCTACGCCTACTCGGGCGGACTCTA
CGCACCCACGTACAGTGCTGCCTACACCAGCGGCGTCTATGCCGCCACGC
CCTACGCCTACGGAGCCTATCCCTACAGCTCGCTGTACCTGAGACGCTGA
AAGCTTTCTAGACC
BS16981.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:32:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32266-PA | 234 | CG32266-RA | 1..234 | 17..250 | 1170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:57:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32266-RA | 526 | CG32266-RA | 41..275 | 17..251 | 1175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:57:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3791087..3791309 | 29..251 | 1115 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:57:08 has no hits.
BS16981.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:32:39 Download gff for
BS16981.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32266-PA | 1..234 | 17..250 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:35:04 Download gff for
BS16981.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32266-RA | 30..286 | 7..264 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:18 Download gff for
BS16981.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32266-RA | 30..286 | 7..264 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:18 Download gff for
BS16981.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3791087..3791320 | 29..264 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:35:04 Download gff for
BS16981.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3791087..3791320 | 29..264 | 97 | | Plus |
BS16981.complete Sequence
266 bp assembled on 2007-05-07
GenBank Submission: FJ638226
> BS16981.complete
GAAGTTATCAGTCGACATGTTCAAGTTTTTCGCTCTGTGCCTGTTCGCCC
TGTTGGCCGTTGCCTGTGGCAAGCCGCAATTCCTGACCGCCTACAGTGCG
GCCTCGCCTGTGGTTGCTGCCACGCCCTACGCCTACTCGGGCGGACTCTA
CGCACCCACGTACAGTGCTGCCTACACCAGCGGCGTCTATGCCGCCACGC
CCTACGCCTACGGAGCCTATCCCTACAGCTCGCTGTACCTGAGACGCTGA
AAGCTTTCTAGACCAT
BS16981.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:43:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32266-RA | 234 | CG32266-PA | 1..234 | 17..250 | 1170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:43:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32266-RA | 526 | CG32266-RA | 41..275 | 17..251 | 1175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:43:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3791087..3791309 | 29..251 | 1115 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:43:33 has no hits.
BS16981.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:52 Download gff for
BS16981.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32266-RA | 1..234 | 17..250 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:14:16 Download gff for
BS16981.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32266-RA | 30..288 | 7..266 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:31 Download gff for
BS16981.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32266-RA | 46..273 | 22..249 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:52 Download gff for
BS16981.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32266-RA | 30..288 | 7..266 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:25 Download gff for
BS16981.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32266-RA | 46..273 | 22..249 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:25 Download gff for
BS16981.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3791083..3791307 | 22..249 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:31 Download gff for
BS16981.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3791083..3791307 | 22..249 | 98 | | Plus |
BS16981.pep Sequence
Translation from 16 to 249
> BS16981.pep
MFKFFALCLFALLAVACGKPQFLTAYSAASPVVAATPYAYSGGLYAPTYS
AAYTSGVYAATPYAYGAYPYSSLYLRR*
BS16981.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:37:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32266-PA | 77 | CG32266-PA | 1..77 | 1..77 | 403 | 100 | Plus |
CG13067-PA | 79 | CG13067-PA | 1..78 | 1..74 | 150 | 50 | Plus |
CG13069-PA | 97 | CG13069-PA | 1..79 | 1..70 | 135 | 40.5 | Plus |