Clone Sequence Records
BS17038.complete Sequence
1907 bp assembled on 2009-12-08
GenBank Submission: KX800632
> BS17038.complete
GAAGTTATCAGTCGACATGTCTTGGCCTGGCAAACTGCTAGTTACCTACG
AAAACTTTACAACCGATTTGCCAGTCCTTAGCATTGACAAGAAGCCATAT
GGATGCCCTGCTTCCTGCCACTGCAAGTGCAAGTGCTGTCGAGGATTCAG
GGAGAAGTACGTGGCATTCAATGGGGAAGGGGAGACCATATTTGGAACGG
ATTTCTCCAGCGAGTTATGCGAAGACGTTCAGAAAATTATGCGTTTCCGA
AGCTCGGATATGCTGCTATTACTGCGCACAGCACAATTACGCGATAATTT
CTGGACCAATGAGTATTTTAAGGCTGATTTACAGGACGATTTTCGAGCAA
TATTCGATGCCTTCGAAGAGAAGAACCGCAAAGTACAATTGGAAAAGTTA
GCTGCCATTCTGGATACAGTGAGCAGCGGCTACAGACGTTCAGTTAGCCA
ACTGGCAGGCCAGGAAGCACATGGAGCTCTGCGTCCCAAAATTGCAGCTT
TATTCCTACCAGGACTGCGCTGCGATTGCTACAAATGTGAGAATCTACCG
TGGAAAAAGCTGCAGGACGTGGAGGATCATCAAAAGACGCATCGCTATTC
AGACAACTTTCACTGCCAGATATGCTACAGGCGATTCTATCTGCAGCACT
CGTTAACCTCACACATAATCAGAAAATCCACAAGCTCGCGGGAACTTCAC
GAAAACAAGAGATATAAACGACTACTGGAGAATCAGAAGTCACAAGAGGA
GAAGGAACTGGAGCTATCACTTAACAAGGTAGAGGATATCTTGGTGCCAG
TTGCCGAGGACCTGCAATCGTACTTTAAGGATGAATCGAAACATCCAATT
CAAAAACGAAAGACTTCTAGCCTCAGCAAATGTCCAAGTTGCGCTCAGAA
CTATGGCTTCTCCTTTAGCCACCAGCTGCATATGGTTAAGCATAGACGGG
AAAGGCTATATACGAACTTCCCTTTTCACTGTTCCTTTTGCAACAGGTCG
TTTCTCACCCGGAAATTCCTACGTAAGCACCAGCAGAGGGTTAGAACATT
CAGTACTCTGCTATATCGCCCCTTTAAGTGTCCTCACTGCACATGGAGAT
TCCAACTGAAGTCTGCCCTCGATTCACATGTACTGCGAATCCATGAACGC
AGAAAACCCTGCCTAATATGCAAACTACCAACCTCTCGTCTATGCTGCTC
TGCTCATACCTCTAAGGAATGCAATAGAGCCATGCAAAAATATCGGGATA
AAATGCGTCCGTTGAGAGAACCTCCAAAGGGAGGCTGCAGGAAGCAACCC
ACTCCAGTCTGCAAAATCTGCAATAGGAAGTTCACGAGAAAATTTTTCCT
TGAGGAACACATGAACAAAGCTCATTTGAACAAGAGGAATTTCACCTGCG
AAATCTGCGGAGCGAATTTCTACAGTCAGGGCACCATGCAAACCCACCGA
AAAGCAGTGCATCTTTTAGTTCACACCGTTCAGTGTGAAGTTTGCGATCT
GACCATTAAATCGAAGGGAAATTACCGCAGGCACTGCAAATCTCAAAGCC
ATAAGGATAACCTTGTAAAGTTCGGGAAAAATAATGACAAAACAAAAGAT
AGCAATCGCCGCAAAGGGGCAAGAACCACCGATGAAAAGCTTGATATTGA
AGCAAGTTCGTCAACAAACACATGTATGACATCAGCAAATAAAAGTACAC
ATAACTACAAGAAAATGGGCATAAAAACTAAGCAGACCCACTTGAAAACA
CCCTGCAGGTCGAAAAAACGTGTCAAAATTAAAATCTGTGAAACCTGCGG
AAATTCAATTGTGGGAAGTATGCAAAGACATTACAGATCCATGAAACATA
AACTGAACTTGATGGCACAAGCAAAAATGTTCAAAAAATAAAAGCTTTCT
AGACCAT
BS17038.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:08:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8089-RA | 1875 | CG8089-PA | 1..1875 | 17..1891 | 9375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:08:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8089-RA | 2000 | CG8089-RA | 70..1944 | 17..1891 | 9375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:08:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15145881..15147755 | 1891..17 | 9375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:08:03 has no hits.
BS17038.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:46:01 Download gff for
BS17038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8089-RA | 70..1935 | 17..1882 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:45 Download gff for
BS17038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8089-RA | 70..1935 | 17..1882 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:29 Download gff for
BS17038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8089-RA | 1..1866 | 17..1882 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:45 Download gff for
BS17038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8089-RA | 70..1935 | 17..1882 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:45 Download gff for
BS17038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15145890..15147755 | 17..1882 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:45 Download gff for
BS17038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11033395..11035260 | 17..1882 | 100 | | Minus |
BS17038.3prime Sequence
895 bp (822 high quality bases) assembled on 2007-05-15
> BS17038.3prime
ATGGTCTAGAAAGCTTTTATTTTTTGAACATTTTTGCTTGTGCCATCAAG
TTCAGTTTATGTTTCATGGATCTGTAATGTCTTTGCATACTTCCCACAAT
TGAATTTCCGCAGGTTTCACAGATTTTAATTTTGACACGTTTTTTCGACC
TGCAGGGTGTTTTCAAGTGGGTCTGCTTAGTTTTTATGCCCATTTTCTTG
TAGTTATGTGTACTTTTATTTGCTGATGTCATACATGTGTTTGTTGACGA
ACTTGCTTCAATATCAAGCTTTTCATCGGTGGTTCTTGCCCCTTTGCGGC
GATTGCTATCTTTTGTTTTGTCATTATTTTTCCCGAACTTTACAAGGTTA
TCCTTATGGCTTTGAGATTTGCAGTGCCTGCGGTAATTTCCCTTCGATTT
AATGGTCAGATCGCAAACTTCACACTGAACGGTGTGAACTAAAAGATGCA
CTGCTTTTCGGTGGGTTTGCATGGTGCCCTGACTGTAGAAATTCGCTCCG
CAGATTTCGCAGGTGAAATTCCTCTTGTTCAAATGAGCTTTGTTCATGTG
TTCCTCAAGGAAAAATTTTCTCGTGAACTTCCTATTGCAGATTTTGCAGA
CTGGAGTGGGTTGCTTCCTGCAGCCTCCCTTTGGAGGTTCTCTCAACGGA
CGCATTTTATCCCGATATTTTTGCATGGCTCTATTGCATTCCTTAGAGGT
ATGAGCAGAGCAGCATAGACGAGAGGTTGGTAGTTTGCATATTAGGCAGG
GTTTTCTGCGTTCATGGATTCGCAGTACATGTGAATCGAGGGCAGACTTC
AGTTGGAATCTCCATGTGCAGTGAGGACACTTAAAGGGGCGATATAGCAG
AGTACTGAATGTTCTAACCCTCTGCTGGTGCTTACGTAAGAATTT
BS17038.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8089-PA | 1875 | CG8089-RA | 997..1875 | 895..17 | 4370 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:02:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8089-RA | 2000 | CG8089-RA | 1066..1944 | 895..17 | 4380 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:02:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15145881..15146759 | 17..895 | 4380 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:02:42 has no hits.
BS17038.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:10 Download gff for
BS17038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8089-PA | 997..1875 | 17..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:52:36 Download gff for
BS17038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8089-RA | 1066..1954 | 9..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:30:53 Download gff for
BS17038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8089-RA | 1066..1954 | 9..895 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:30:53 Download gff for
BS17038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15145871..15146759 | 9..895 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:52:36 Download gff for
BS17038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11033376..11034264 | 9..895 | 99 | | Plus |
BS17038.5prime Sequence
804 bp (803 high quality bases) assembled on 2007-05-15
> BS17038.5prime
GAAGTTATCAGTCGACATGTCTTGGCCTGGCAAACTGCTAGTTACCTACG
AAAACTTTACAACCGATTTGCCAGTCCTTAGCATTGACAAGAAGCCATAT
GGATGCCCTGCTTCCTGCCACTGCAAGTGCAAGTGCTGTCGAGGATTCAG
GGAGAAGTACGTGGCATTCAATGGGGAAGGGGAGACCATATTTGGAACGG
ATTTCTCCAGCGAGTTATGCGAAGACGTTCAGAAAATTATGCGTTTCCGA
AGCTCGGATATGCTGCTATTACTGCGCACAGCACAATTACGCGATAATTT
CTGGACCAATGAGTATTTTAAGGCTGATTTACAGGACGATTTTCGAGCAA
TATTCGATGCCTTCGAAGAGAAGAACCGCAAAGTACAATTGGAAAAGTTA
GCTGCCATTCTGGATACAGTGAGCAGCGGCTACAGACGTTCAGTTAGCCA
ACTGGCAGGCCAGGAAGCACATGGAGCTCTGCGTCCCAAAATTGCAGCTT
TATTCCTACCAGGACTGCGCTGCGATTGCTACAAATGTGAGAATCTACCG
TGGAAAAAGCTGCAGGACGTGGAGGATCATCAAAAGACGCATCGCTATTC
AGACAACTTTCACTGCCAGATATGCTACAGGCGATTCTATCTGCAGCACT
CGTTAACCTCACACATAATCAGAAAATCCACAAGCTCGCGGGAACTTCAC
GAAAACAAGAGATATAAACGACTACTGGAGAATCAGAAGTCACAAGAGGA
GAAGGAACTGGAGCTATCACTTAACAAGGTAGAGGATATCTTGGTGCCAG
TTGC
BS17038.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:53:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8089-PA | 1875 | CG8089-RA | 1..788 | 17..804 | 3940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:59:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8089-RA | 2000 | CG8089-RA | 70..857 | 17..804 | 3940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:59:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15146968..15147755 | 804..17 | 3940 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:59:25 has no hits.
BS17038.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:53:31 Download gff for
BS17038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8089-PA | 1..788 | 17..804 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:47:49 Download gff for
BS17038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8089-RA | 70..857 | 17..804 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:35 Download gff for
BS17038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8089-RA | 70..857 | 17..804 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:35 Download gff for
BS17038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15146968..15147755 | 17..804 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:47:49 Download gff for
BS17038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11034473..11035260 | 17..804 | 100 | | Minus |
BS17038.pep Sequence
Translation from 16 to 1890
> BS17038.pep
MSWPGKLLVTYENFTTDLPVLSIDKKPYGCPASCHCKCKCCRGFREKYVA
FNGEGETIFGTDFSSELCEDVQKIMRFRSSDMLLLLRTAQLRDNFWTNEY
FKADLQDDFRAIFDAFEEKNRKVQLEKLAAILDTVSSGYRRSVSQLAGQE
AHGALRPKIAALFLPGLRCDCYKCENLPWKKLQDVEDHQKTHRYSDNFHC
QICYRRFYLQHSLTSHIIRKSTSSRELHENKRYKRLLENQKSQEEKELEL
SLNKVEDILVPVAEDLQSYFKDESKHPIQKRKTSSLSKCPSCAQNYGFSF
SHQLHMVKHRRERLYTNFPFHCSFCNRSFLTRKFLRKHQQRVRTFSTLLY
RPFKCPHCTWRFQLKSALDSHVLRIHERRKPCLICKLPTSRLCCSAHTSK
ECNRAMQKYRDKMRPLREPPKGGCRKQPTPVCKICNRKFTRKFFLEEHMN
KAHLNKRNFTCEICGANFYSQGTMQTHRKAVHLLVHTVQCEVCDLTIKSK
GNYRRHCKSQSHKDNLVKFGKNNDKTKDSNRRKGARTTDEKLDIEASSST
NTCMTSANKSTHNYKKMGIKTKQTHLKTPCRSKKRVKIKICETCGNSIVG
SMQRHYRSMKHKLNLMAQAKMFKK*
BS17038.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:09:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8089-PA | 624 | CG8089-PA | 1..624 | 1..624 | 3386 | 100 | Plus |
| crol-PG | 878 | CG14938-PG | 279..613 | 171..511 | 239 | 24.4 | Plus |
| crol-PF | 907 | CG14938-PF | 307..642 | 171..511 | 236 | 24.9 | Plus |
| crol-PC | 756 | CG14938-PC | 192..491 | 179..511 | 232 | 24 | Plus |
| crol-PI | 962 | CG14938-PI | 398..697 | 179..511 | 232 | 24 | Plus |
| crol-PF | 907 | CG14938-PF | 370..670 | 179..482 | 187 | 22.4 | Plus |
| crol-PG | 878 | CG14938-PG | 307..641 | 171..482 | 175 | 22 | Plus |
