Clone BS17039 Report

Search the DGRC for BS17039

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:170
Well:39
Vector:pDNR-Dual
Associated Gene/Transcriptrobl22E-RA
Protein status:BS17039.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17039.3prime Sequence

324 bp (324 high quality bases) assembled on 2007-05-15

> BS17039.3prime
ATGGTCTAGAAAGCTTCTAGTCGCACGGGCTCTGGATCACCATGATGAAG
TAATCTTCCTGCGGGCACAGCATCACCTCATTCTGCTCAGTCCGCAGCCG
CAGGAAGGTGAATTCGTTGGTGGCGTCCAGATCCAGGACCACCTGGCGAG
CCTTCTCCCGCACCGTTTGCATCAGTGCCGCGTAGTGGAGTGTCAGAGTG
TAGTCCAGGGTCGTTTTGATCGGAATGCCGTCGTTGTCCACCACAACTAT
GCCGGTGACGTTCTTCATGGACTGAAAGCGCTTCAATAGTTCCTCCACTT
CGGCGGACATGTCGACTGATAACT

BS17039.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG10838-PA 294 robl22E-RA 1..294 310..17 1470 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
robl22E-RB 454 CG10838-RB 56..350 310..16 1475 100 Minus
robl22E-RA 475 CG10838-RA 77..371 310..16 1475 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2290328..2290622 16..310 1475 100 Plus
Blast to na_te.dros performed on 2015-02-10 14:57:51 has no hits.

BS17039.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:18 Download gff for BS17039.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10838-PA 1..294 17..310 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:19:11 Download gff for BS17039.3prime
Subject Subject Range Query Range Percent Splice Strand
robl22E-RA 74..373 13..317 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:32 Download gff for BS17039.3prime
Subject Subject Range Query Range Percent Splice Strand
robl22E-RA 74..373 13..317 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:32 Download gff for BS17039.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2290326..2290625 13..317 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:19:11 Download gff for BS17039.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2290326..2290625 13..317 98   Plus

BS17039.complete Sequence

326 bp assembled on 2007-05-08

GenBank Submission: FJ638227

> BS17039.complete
GAAGTTATCAGTCGACATGTCCGCCGAAGTGGAGGAACTATTGAAGCGCT
TTCAGTCCATGAAGAACGTCACCGGCATAGTTGTGGTGGACAACGACGGC
ATTCCGATCAAAACGACCCTGGACTACACTCTGACACTCCACTACGCGGC
ACTGATGCAAACGGTGCGGGAGAAGGCTCGCCAGGTGGTCCTGGATCTGG
ACGCCACCAACGAATTCACCTTCCTGCGGCTGCGGACTGAGCAGAATGAG
GTGATGCTGTGCCCGCAGGAAGATTACTTCATCATGGTGATCCAGAGCCC
GTGCGACTAGAAGCTTTCTAGACCAT

BS17039.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
robl22E-RB 294 CG10838-PB 1..294 17..310 1470 100 Plus
robl22E-RA 294 CG10838-PA 1..294 17..310 1470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
robl22E-RB 454 CG10838-RB 56..350 17..311 1475 100 Plus
robl22E-RA 475 CG10838-RA 77..371 17..311 1475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2290328..2290622 311..17 1475 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:34:10 has no hits.

BS17039.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:25 Download gff for BS17039.complete
Subject Subject Range Query Range Percent Splice Strand
robl22E-RA 1..294 17..310 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:04 Download gff for BS17039.complete
Subject Subject Range Query Range Percent Splice Strand
robl22E-RA 1..294 17..310 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:08 Download gff for BS17039.complete
Subject Subject Range Query Range Percent Splice Strand
robl22E-RA 77..370 17..310 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:25 Download gff for BS17039.complete
Subject Subject Range Query Range Percent Splice Strand
robl22E-RA 1..294 17..310 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:29 Download gff for BS17039.complete
Subject Subject Range Query Range Percent Splice Strand
robl22E-RA 77..370 17..310 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:29 Download gff for BS17039.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2290329..2290622 17..310 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:08 Download gff for BS17039.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2290329..2290622 17..310 100   Minus

BS17039.5prime Sequence

324 bp (324 high quality bases) assembled on 2007-05-15

> BS17039.5prime
GAAGTTATCAGTCGACATGTCCGCCGAAGTGGAGGAACTATTGAAGCGCT
TTCAGTCCATGAAGAACGTCACCGGCATAGTTGTGGTGGACAACGACGGC
ATTCCGATCAAAACGACCCTGGACTACACTCTGACACTCCACTACGCGGC
ACTGATGCAAACGGTGCGGGAGAAGGCTCGCCAGGTGGTCCTGGATCTGG
ACGCCACCAACGAATTCACCTTCCTGCGGCTGCGGACTGAGCAGAATGAG
GTGATGCTGTGCCCGCAGGAAGATTACTTCATCATGGTGATCCAGAGCCC
GTGCGACTAGAAGCTTTCTAGACC

BS17039.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG10838-PA 294 robl22E-RA 1..294 17..310 1470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
robl22E-RB 454 CG10838-RB 56..350 17..311 1475 100 Plus
robl22E-RA 475 CG10838-RA 77..371 17..311 1475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2290328..2290622 311..17 1475 100 Minus
Blast to na_te.dros performed on 2015-02-13 13:20:26 has no hits.

BS17039.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:53:40 Download gff for BS17039.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10838-PA 1..294 17..310 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:41:12 Download gff for BS17039.5prime
Subject Subject Range Query Range Percent Splice Strand
robl22E-RA 74..373 10..314 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:45:51 Download gff for BS17039.5prime
Subject Subject Range Query Range Percent Splice Strand
robl22E-RA 74..373 10..314 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:45:51 Download gff for BS17039.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2290326..2290625 10..314 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:41:12 Download gff for BS17039.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2290326..2290625 10..314 98   Minus

BS17039.pep Sequence

Translation from 16 to 309

> BS17039.pep
MSAEVEELLKRFQSMKNVTGIVVVDNDGIPIKTTLDYTLTLHYAALMQTV
REKARQVVLDLDATNEFTFLRLRTEQNEVMLCPQEDYFIMVIQSPCD*

BS17039.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
robl22E-PB 97 CG10838-PB 1..97 1..97 491 100 Plus
robl22E-PA 97 CG10838-PA 1..97 1..97 491 100 Plus
robl-PA 97 CG10751-PA 1..97 1..97 285 54.6 Plus
CG10834-PA 97 CG10834-PA 1..95 1..95 282 53.7 Plus
CG10822-PA 114 CG10822-PA 15..107 5..97 158 31.2 Plus