Clone Sequence Records
BS17039.3prime Sequence
324 bp (324 high quality bases) assembled on 2007-05-15
> BS17039.3prime
ATGGTCTAGAAAGCTTCTAGTCGCACGGGCTCTGGATCACCATGATGAAG
TAATCTTCCTGCGGGCACAGCATCACCTCATTCTGCTCAGTCCGCAGCCG
CAGGAAGGTGAATTCGTTGGTGGCGTCCAGATCCAGGACCACCTGGCGAG
CCTTCTCCCGCACCGTTTGCATCAGTGCCGCGTAGTGGAGTGTCAGAGTG
TAGTCCAGGGTCGTTTTGATCGGAATGCCGTCGTTGTCCACCACAACTAT
GCCGGTGACGTTCTTCATGGACTGAAAGCGCTTCAATAGTTCCTCCACTT
CGGCGGACATGTCGACTGATAACT
BS17039.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10838-PA | 294 | robl22E-RA | 1..294 | 310..17 | 1470 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:57:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
robl22E-RB | 454 | CG10838-RB | 56..350 | 310..16 | 1475 | 100 | Minus |
robl22E-RA | 475 | CG10838-RA | 77..371 | 310..16 | 1475 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:57:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2290328..2290622 | 16..310 | 1475 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 14:57:51 has no hits.
BS17039.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:18 Download gff for
BS17039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10838-PA | 1..294 | 17..310 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:19:11 Download gff for
BS17039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl22E-RA | 74..373 | 13..317 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:32 Download gff for
BS17039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl22E-RA | 74..373 | 13..317 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:32 Download gff for
BS17039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2290326..2290625 | 13..317 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:19:11 Download gff for
BS17039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2290326..2290625 | 13..317 | 98 | | Plus |
BS17039.complete Sequence
326 bp assembled on 2007-05-08
GenBank Submission: FJ638227
> BS17039.complete
GAAGTTATCAGTCGACATGTCCGCCGAAGTGGAGGAACTATTGAAGCGCT
TTCAGTCCATGAAGAACGTCACCGGCATAGTTGTGGTGGACAACGACGGC
ATTCCGATCAAAACGACCCTGGACTACACTCTGACACTCCACTACGCGGC
ACTGATGCAAACGGTGCGGGAGAAGGCTCGCCAGGTGGTCCTGGATCTGG
ACGCCACCAACGAATTCACCTTCCTGCGGCTGCGGACTGAGCAGAATGAG
GTGATGCTGTGCCCGCAGGAAGATTACTTCATCATGGTGATCCAGAGCCC
GTGCGACTAGAAGCTTTCTAGACCAT
BS17039.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:34:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
robl22E-RB | 294 | CG10838-PB | 1..294 | 17..310 | 1470 | 100 | Plus |
robl22E-RA | 294 | CG10838-PA | 1..294 | 17..310 | 1470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:34:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
robl22E-RB | 454 | CG10838-RB | 56..350 | 17..311 | 1475 | 100 | Plus |
robl22E-RA | 475 | CG10838-RA | 77..371 | 17..311 | 1475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:34:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2290328..2290622 | 311..17 | 1475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:34:10 has no hits.
BS17039.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:25 Download gff for
BS17039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl22E-RA | 1..294 | 17..310 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:04 Download gff for
BS17039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl22E-RA | 1..294 | 17..310 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:08 Download gff for
BS17039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl22E-RA | 77..370 | 17..310 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:25 Download gff for
BS17039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl22E-RA | 1..294 | 17..310 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:29 Download gff for
BS17039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl22E-RA | 77..370 | 17..310 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:29 Download gff for
BS17039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2290329..2290622 | 17..310 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:08 Download gff for
BS17039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2290329..2290622 | 17..310 | 100 | | Minus |
BS17039.5prime Sequence
324 bp (324 high quality bases) assembled on 2007-05-15
> BS17039.5prime
GAAGTTATCAGTCGACATGTCCGCCGAAGTGGAGGAACTATTGAAGCGCT
TTCAGTCCATGAAGAACGTCACCGGCATAGTTGTGGTGGACAACGACGGC
ATTCCGATCAAAACGACCCTGGACTACACTCTGACACTCCACTACGCGGC
ACTGATGCAAACGGTGCGGGAGAAGGCTCGCCAGGTGGTCCTGGATCTGG
ACGCCACCAACGAATTCACCTTCCTGCGGCTGCGGACTGAGCAGAATGAG
GTGATGCTGTGCCCGCAGGAAGATTACTTCATCATGGTGATCCAGAGCCC
GTGCGACTAGAAGCTTTCTAGACC
BS17039.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:53:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10838-PA | 294 | robl22E-RA | 1..294 | 17..310 | 1470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:20:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
robl22E-RB | 454 | CG10838-RB | 56..350 | 17..311 | 1475 | 100 | Plus |
robl22E-RA | 475 | CG10838-RA | 77..371 | 17..311 | 1475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:20:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2290328..2290622 | 311..17 | 1475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:20:26 has no hits.
BS17039.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:53:40 Download gff for
BS17039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10838-PA | 1..294 | 17..310 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:41:12 Download gff for
BS17039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl22E-RA | 74..373 | 10..314 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:45:51 Download gff for
BS17039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl22E-RA | 74..373 | 10..314 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:45:51 Download gff for
BS17039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2290326..2290625 | 10..314 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:41:12 Download gff for
BS17039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2290326..2290625 | 10..314 | 98 | | Minus |
BS17039.pep Sequence
Translation from 16 to 309
> BS17039.pep
MSAEVEELLKRFQSMKNVTGIVVVDNDGIPIKTTLDYTLTLHYAALMQTV
REKARQVVLDLDATNEFTFLRLRTEQNEVMLCPQEDYFIMVIQSPCD*
BS17039.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
robl22E-PB | 97 | CG10838-PB | 1..97 | 1..97 | 491 | 100 | Plus |
robl22E-PA | 97 | CG10838-PA | 1..97 | 1..97 | 491 | 100 | Plus |
robl-PA | 97 | CG10751-PA | 1..97 | 1..97 | 285 | 54.6 | Plus |
CG10834-PA | 97 | CG10834-PA | 1..95 | 1..95 | 282 | 53.7 | Plus |
CG10822-PA | 114 | CG10822-PA | 15..107 | 5..97 | 158 | 31.2 | Plus |