Clone Sequence Records
BS17040.3prime Sequence
513 bp (513 high quality bases) assembled on 2007-05-15
> BS17040.3prime
ATGGTCTAGAAAGCTTTTAGTAGTCCGGCAGGATCGGTGGTTCCGGTGAC
CTTTTGCCGCCCCACGAGTGGAATCGCTGCTTCTTGCCCAGCACGACGGA
GTTGCGCTTCTCGTCGCGCTGCAGCTGGGATTTGATGCGGCACCTTTCAA
TCACCGCATCCCGGATGATGGGCGAGAACTCCTTGTCACCGAACTGGGCC
ATTAGCAGGCGGAAGAAGGCCCAGATCTCGCCACGCTGAGATGTGGGTGG
TGGGGCGTAGTGCCGGAAGGGCCATCCCTCCGAGTCCGAATCCTGGCCAC
CGGGCCTGGAGCTGTACGCGTCGCAGACATCCTCAAAGCTCAGTATGGCC
TGCAGGATGAACCTGCGGTACTTGGAGAGCTGCAGCTCACAGGTTGCCAA
CTCGGGATCCTGTTCAGAAATCGGTGCCGGCACCAGGCTGGCTCCATAGA
CTTGACGGCCAAAGGCCAGGAGCACCATACACAGGACTATCTTTGCCATG
TCGACTGATAACT
BS17040.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:59:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13480-PA | 483 | Leucokinin-RA | 1..483 | 499..17 | 2415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:33:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lk-RA | 626 | CG13480-RA | 35..517 | 499..17 | 2415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:33:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14560248..14560730 | 17..499 | 2415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:33:11 has no hits.
BS17040.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:59:16 Download gff for
BS17040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13480-PA | 1..483 | 17..499 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:19:01 Download gff for
BS17040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lk-RA | 30..517 | 17..506 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:45 Download gff for
BS17040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lk-RA | 30..517 | 17..506 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:45 Download gff for
BS17040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14560248..14560735 | 17..506 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:19:01 Download gff for
BS17040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14553348..14553835 | 17..506 | 99 | | Plus |
BS17040.5prime Sequence
513 bp (513 high quality bases) assembled on 2007-05-15
> BS17040.5prime
GAAGTTATCAGTCGACATGGCAAAGATAGTCCTGTGTATGGTGCTCCTGG
CCTTTGGCCGTCAAGTCTATGGAGCCAGCCTGGTGCCGGCACCGATTTCT
GAACAGGATCCCGAGTTGGCAACCTGTGAGCTGCAGCTCTCCAAGTACCG
CAGGTTCATCCTGCAGGCCATACTGAGCTTTGAGGATGTCTGCGACGCGT
ACAGCTCCAGGCCCGGTGGCCAGGATTCGGACTCGGAGGGATGGCCCTTC
CGGCACTACGCCCCACCACCCACATCTCAGCGTGGCGAGATCTGGGCCTT
CTTCCGCCTGCTAATGGCCCAGTTCGGTGACAAGGAGTTCTCGCCCATCA
TCCGGGATGCGGTGATTGAAAGGTGCCGCATCAAATCCCAGCTGCAGCGC
GACGAGAAGCGCAACTCCGTCGTGCTGGGCAAGAAGCAGCGATTCCACTC
GTGGGGCGGCAAAAGGTCACCGGAACCACCGATCCTGCCGGACTACTAAA
AGCTTTCTAGACC
BS17040.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:55:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13480-PA | 483 | Leucokinin-RA | 1..483 | 17..499 | 2415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:41:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lk-RA | 626 | CG13480-RA | 35..517 | 17..499 | 2415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:40:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14560248..14560730 | 499..17 | 2415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:41:01 has no hits.
BS17040.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:55:22 Download gff for
BS17040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13480-PA | 1..483 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:20:35 Download gff for
BS17040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lk-RA | 30..517 | 10..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:23:16 Download gff for
BS17040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lk-RA | 30..517 | 10..499 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:23:16 Download gff for
BS17040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14560248..14560735 | 10..499 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:20:35 Download gff for
BS17040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14553348..14553835 | 10..499 | 99 | | Minus |
BS17040.complete Sequence
515 bp assembled on 2007-05-08
GenBank Submission: FJ638228
> BS17040.complete
GAAGTTATCAGTCGACATGGCAAAGATAGTCCTGTGTATGGTGCTCCTGG
CCTTTGGCCGTCAAGTCTATGGAGCCAGCCTGGTGCCGGCACCGATTTCT
GAACAGGATCCCGAGTTGGCAACCTGTGAGCTGCAGCTCTCCAAGTACCG
CAGGTTCATCCTGCAGGCCATACTGAGCTTTGAGGATGTCTGCGACGCGT
ACAGCTCCAGGCCCGGTGGCCAGGATTCGGACTCGGAGGGATGGCCCTTC
CGGCACTACGCCCCACCACCCACATCTCAGCGTGGCGAGATCTGGGCCTT
CTTCCGCCTGCTAATGGCCCAGTTCGGTGACAAGGAGTTCTCGCCCATCA
TCCGGGATGCGGTGATTGAAAGGTGCCGCATCAAATCCCAGCTGCAGCGC
GACGAGAAGCGCAACTCCGTCGTGCTGGGCAAGAAGCAGCGATTCCACTC
GTGGGGCGGCAAAAGGTCACCGGAACCACCGATCCTGCCGGACTACTAAA
AGCTTTCTAGACCAT
BS17040.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:38:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lk-RA | 483 | CG13480-PA | 1..483 | 17..499 | 2415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lk-RA | 626 | CG13480-RA | 35..517 | 17..499 | 2415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14560248..14560730 | 499..17 | 2415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:38:51 has no hits.
BS17040.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:06 Download gff for
BS17040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Leucokinin-RA | 1..483 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:06 Download gff for
BS17040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Leucokinin-RA | 30..517 | 10..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:40:54 Download gff for
BS17040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lk-RA | 35..515 | 17..497 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:06 Download gff for
BS17040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Leucokinin-RA | 30..517 | 10..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:33 Download gff for
BS17040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lk-RA | 35..515 | 17..497 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:33 Download gff for
BS17040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14560250..14560730 | 17..497 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:40:54 Download gff for
BS17040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14553350..14553830 | 17..497 | 100 | | Minus |
BS17040.pep Sequence
Translation from 16 to 498
> BS17040.pep
MAKIVLCMVLLAFGRQVYGASLVPAPISEQDPELATCELQLSKYRRFILQ
AILSFEDVCDAYSSRPGGQDSDSEGWPFRHYAPPPTSQRGEIWAFFRLLM
AQFGDKEFSPIIRDAVIERCRIKSQLQRDEKRNSVVLGKKQRFHSWGGKR
SPEPPILPDY*
BS17040.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lk-PA | 160 | CG13480-PA | 1..160 | 1..160 | 848 | 100 | Plus |