Clone BS17040 Report

Search the DGRC for BS17040

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:170
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptLk-RA
Protein status:BS17040.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17040.3prime Sequence

513 bp (513 high quality bases) assembled on 2007-05-15

> BS17040.3prime
ATGGTCTAGAAAGCTTTTAGTAGTCCGGCAGGATCGGTGGTTCCGGTGAC
CTTTTGCCGCCCCACGAGTGGAATCGCTGCTTCTTGCCCAGCACGACGGA
GTTGCGCTTCTCGTCGCGCTGCAGCTGGGATTTGATGCGGCACCTTTCAA
TCACCGCATCCCGGATGATGGGCGAGAACTCCTTGTCACCGAACTGGGCC
ATTAGCAGGCGGAAGAAGGCCCAGATCTCGCCACGCTGAGATGTGGGTGG
TGGGGCGTAGTGCCGGAAGGGCCATCCCTCCGAGTCCGAATCCTGGCCAC
CGGGCCTGGAGCTGTACGCGTCGCAGACATCCTCAAAGCTCAGTATGGCC
TGCAGGATGAACCTGCGGTACTTGGAGAGCTGCAGCTCACAGGTTGCCAA
CTCGGGATCCTGTTCAGAAATCGGTGCCGGCACCAGGCTGGCTCCATAGA
CTTGACGGCCAAAGGCCAGGAGCACCATACACAGGACTATCTTTGCCATG
TCGACTGATAACT

BS17040.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG13480-PA 483 Leucokinin-RA 1..483 499..17 2415 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:33:12
Subject Length Description Subject Range Query Range Score Percent Strand
Lk-RA 626 CG13480-RA 35..517 499..17 2415 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14560248..14560730 17..499 2415 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:33:11 has no hits.

BS17040.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:59:16 Download gff for BS17040.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13480-PA 1..483 17..499 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:19:01 Download gff for BS17040.3prime
Subject Subject Range Query Range Percent Splice Strand
Lk-RA 30..517 17..506 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:45 Download gff for BS17040.3prime
Subject Subject Range Query Range Percent Splice Strand
Lk-RA 30..517 17..506 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:45 Download gff for BS17040.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14560248..14560735 17..506 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:19:01 Download gff for BS17040.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14553348..14553835 17..506 99   Plus

BS17040.5prime Sequence

513 bp (513 high quality bases) assembled on 2007-05-15

> BS17040.5prime
GAAGTTATCAGTCGACATGGCAAAGATAGTCCTGTGTATGGTGCTCCTGG
CCTTTGGCCGTCAAGTCTATGGAGCCAGCCTGGTGCCGGCACCGATTTCT
GAACAGGATCCCGAGTTGGCAACCTGTGAGCTGCAGCTCTCCAAGTACCG
CAGGTTCATCCTGCAGGCCATACTGAGCTTTGAGGATGTCTGCGACGCGT
ACAGCTCCAGGCCCGGTGGCCAGGATTCGGACTCGGAGGGATGGCCCTTC
CGGCACTACGCCCCACCACCCACATCTCAGCGTGGCGAGATCTGGGCCTT
CTTCCGCCTGCTAATGGCCCAGTTCGGTGACAAGGAGTTCTCGCCCATCA
TCCGGGATGCGGTGATTGAAAGGTGCCGCATCAAATCCCAGCTGCAGCGC
GACGAGAAGCGCAACTCCGTCGTGCTGGGCAAGAAGCAGCGATTCCACTC
GTGGGGCGGCAAAAGGTCACCGGAACCACCGATCCTGCCGGACTACTAAA
AGCTTTCTAGACC

BS17040.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG13480-PA 483 Leucokinin-RA 1..483 17..499 2415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
Lk-RA 626 CG13480-RA 35..517 17..499 2415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:40:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14560248..14560730 499..17 2415 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:41:01 has no hits.

BS17040.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:55:22 Download gff for BS17040.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13480-PA 1..483 17..499 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:20:35 Download gff for BS17040.5prime
Subject Subject Range Query Range Percent Splice Strand
Lk-RA 30..517 10..499 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:23:16 Download gff for BS17040.5prime
Subject Subject Range Query Range Percent Splice Strand
Lk-RA 30..517 10..499 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:23:16 Download gff for BS17040.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14560248..14560735 10..499 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:20:35 Download gff for BS17040.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14553348..14553835 10..499 99   Minus

BS17040.complete Sequence

515 bp assembled on 2007-05-08

GenBank Submission: FJ638228

> BS17040.complete
GAAGTTATCAGTCGACATGGCAAAGATAGTCCTGTGTATGGTGCTCCTGG
CCTTTGGCCGTCAAGTCTATGGAGCCAGCCTGGTGCCGGCACCGATTTCT
GAACAGGATCCCGAGTTGGCAACCTGTGAGCTGCAGCTCTCCAAGTACCG
CAGGTTCATCCTGCAGGCCATACTGAGCTTTGAGGATGTCTGCGACGCGT
ACAGCTCCAGGCCCGGTGGCCAGGATTCGGACTCGGAGGGATGGCCCTTC
CGGCACTACGCCCCACCACCCACATCTCAGCGTGGCGAGATCTGGGCCTT
CTTCCGCCTGCTAATGGCCCAGTTCGGTGACAAGGAGTTCTCGCCCATCA
TCCGGGATGCGGTGATTGAAAGGTGCCGCATCAAATCCCAGCTGCAGCGC
GACGAGAAGCGCAACTCCGTCGTGCTGGGCAAGAAGCAGCGATTCCACTC
GTGGGGCGGCAAAAGGTCACCGGAACCACCGATCCTGCCGGACTACTAAA
AGCTTTCTAGACCAT

BS17040.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Lk-RA 483 CG13480-PA 1..483 17..499 2415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
Lk-RA 626 CG13480-RA 35..517 17..499 2415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14560248..14560730 499..17 2415 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:38:51 has no hits.

BS17040.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:06 Download gff for BS17040.complete
Subject Subject Range Query Range Percent Splice Strand
Leucokinin-RA 1..483 17..499 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:06 Download gff for BS17040.complete
Subject Subject Range Query Range Percent Splice Strand
Leucokinin-RA 30..517 10..499 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:40:54 Download gff for BS17040.complete
Subject Subject Range Query Range Percent Splice Strand
Lk-RA 35..515 17..497 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:06 Download gff for BS17040.complete
Subject Subject Range Query Range Percent Splice Strand
Leucokinin-RA 30..517 10..499 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:33 Download gff for BS17040.complete
Subject Subject Range Query Range Percent Splice Strand
Lk-RA 35..515 17..497 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:33 Download gff for BS17040.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14560250..14560730 17..497 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:40:54 Download gff for BS17040.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14553350..14553830 17..497 100   Minus

BS17040.pep Sequence

Translation from 16 to 498

> BS17040.pep
MAKIVLCMVLLAFGRQVYGASLVPAPISEQDPELATCELQLSKYRRFILQ
AILSFEDVCDAYSSRPGGQDSDSEGWPFRHYAPPPTSQRGEIWAFFRLLM
AQFGDKEFSPIIRDAVIERCRIKSQLQRDEKRNSVVLGKKQRFHSWGGKR
SPEPPILPDY*

BS17040.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
Lk-PA 160 CG13480-PA 1..160 1..160 848 100 Plus