Clone Sequence Records
BS17041.3prime Sequence
309 bp (309 high quality bases) assembled on 2007-05-15
> BS17041.3prime
ATGGTCTAGAAAGCTTTCAATTGCGGCAAACGCAGACGGCCTTGTCGTTG
CAGTAGCCGCCTTTGAACCCCTTGGCAATGCAGTGGCCGGCGCAGGCGGT
GTGGTTCCAGTTCCACTTGGAGAGTAGGTCGCATGTGGCTCGCTTCTGGC
GGCTATGCTGCAGCACCTCCTGGTGGGCATCCTCATGCACCAGGACATGA
TCCTCTGGAATTGGATCCACATCGGAAACTGGCTGAGCCTGCGCCACGCA
AGCAAGCAGAGCAAAAGCGATAGCCACGAGAACGAAGAACTTCATGTCGA
CTGATAACT
BS17041.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:59:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1385-PA | 279 | Def-RA | 1..279 | 295..17 | 1395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:14:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Def-RA | 399 | CG1385-RA | 10..288 | 295..17 | 1395 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:14:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10054289..10054567 | 17..295 | 1395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:14:19 has no hits.
BS17041.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:59:25 Download gff for
BS17041.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1385-PA | 1..279 | 17..295 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:50:20 Download gff for
BS17041.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Def-RA | 10..292 | 9..295 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:55:01 Download gff for
BS17041.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Def-RA | 10..292 | 9..295 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:55:01 Download gff for
BS17041.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10054280..10054567 | 9..295 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:50:20 Download gff for
BS17041.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5941785..5942072 | 9..295 | 98 | | Plus |
BS17041.5prime Sequence
309 bp (309 high quality bases) assembled on 2007-05-15
> BS17041.5prime
GAAGTTATCAGTCGACATGAAGTTCTTCGTTCTCGTGGCTATCGCTTTTG
CTCTGCTTGCTTGCGTGGCGCAGGCTCAGCCAGTTTCCGATGTGGATCCA
ATTCCAGAGGATCATGTCCTGGTGCATGAGGATGCCCACCAGGAGGTGCT
GCAGCATAGCCGCCAGAAGCGAGCCACATGCGACCTACTCTCCAAGTGGA
ACTGGAACCACACCGCCTGCGCCGGCCACTGCATTGCCAAGGGGTTCAAA
GGCGGCTACTGCAACGACAAGGCCGTCTGCGTTTGCCGCAATTGAAAGCT
TTCTAGACC
BS17041.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:55:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1385-PA | 279 | Def-RA | 1..279 | 17..295 | 1395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:40:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Def-RA | 399 | CG1385-RA | 10..288 | 17..295 | 1395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:40:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10054289..10054567 | 295..17 | 1395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:40:27 has no hits.
BS17041.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:55:32 Download gff for
BS17041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1385-PA | 1..279 | 17..295 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:49:44 Download gff for
BS17041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Def-RA | 10..292 | 17..303 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:14:07 Download gff for
BS17041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Def-RA | 10..292 | 17..303 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:14:07 Download gff for
BS17041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10054280..10054567 | 17..303 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:49:44 Download gff for
BS17041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5941785..5942072 | 17..303 | 98 | | Minus |
BS17041.complete Sequence
311 bp assembled on 2007-05-08
GenBank Submission: FJ638229
> BS17041.complete
GAAGTTATCAGTCGACATGAAGTTCTTCGTTCTCGTGGCTATCGCTTTTG
CTCTGCTTGCTTGCGTGGCGCAGGCTCAGCCAGTTTCCGATGTGGATCCA
ATTCCAGAGGATCATGTCCTGGTGCATGAGGATGCCCACCAGGAGGTGCT
GCAGCATAGCCGCCAGAAGCGAGCCACATGCGACCTACTCTCCAAGTGGA
ACTGGAACCACACCGCCTGCGCCGGCCACTGCATTGCCAAGGGGTTCAAA
GGCGGCTACTGCAACGACAAGGCCGTCTGCGTTTGCCGCAATTGAAAGCT
TTCTAGACCAT
BS17041.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:55:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Def-RA | 279 | CG1385-PA | 1..279 | 17..295 | 1395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:55:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Def-RA | 399 | CG1385-RA | 10..288 | 17..295 | 1395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:55:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10054289..10054567 | 295..17 | 1395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:55:31 has no hits.
BS17041.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:40:47 Download gff for
BS17041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Def-RA | 1..279 | 17..295 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:48 Download gff for
BS17041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Def-RA | 1..279 | 17..295 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:54 Download gff for
BS17041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Def-RA | 10..287 | 17..294 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:40:47 Download gff for
BS17041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Def-RA | 1..279 | 17..295 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:54 Download gff for
BS17041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Def-RA | 10..287 | 17..294 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:54 Download gff for
BS17041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10054290..10054567 | 17..294 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:54 Download gff for
BS17041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5941795..5942072 | 17..294 | 100 | | Minus |
BS17041.pep Sequence
Translation from 16 to 294
> BS17041.pep
MKFFVLVAIAFALLACVAQAQPVSDVDPIPEDHVLVHEDAHQEVLQHSRQ
KRATCDLLSKWNWNHTACAGHCIAKGFKGGYCNDKAVCVCRN*
BS17041.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Def-PA | 92 | CG1385-PA | 1..92 | 1..92 | 509 | 100 | Plus |
