Clone BS17042 Report

Search the DGRC for BS17042

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:170
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptObp56h-RA
Protein status:BS17042.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17042.3prime Sequence

435 bp (435 high quality bases) assembled on 2007-05-15

> BS17042.3prime
ATGGTCTAGAAAGCTTTTAGTGATGTCCTGGAATGGCCTTGTGCTCCTTC
AGGCACATGGTAACCTTAAAGGCCGTGTCGCAATCGTTGGTTCCCTTGAT
GTCCTTGCAGGCATTCACTCCCGAGGAAATCTCGTCCATTTTGTCCTTGA
TCTGAGGCACATTTTTGAGAGTGTCGAGCATAGCCTGAGCATTGAACTGG
CCATTGGTGAGATGACCCTGCTTCTCCATCAGGCACTTGGTGTAGCACTT
GAGGTTCTCCTTGGCACTGCTCTGCATCCCGCTGGCCATGAACTCCTTGA
GATCAGCCTCGGTCACTTGGTTGGTCTCCATGCACTGTTGCATTATTTGG
CGAAAGTCCGGATTACACTGTCCCATGGACAAAAAAGCTGCCAGAGCAAT
ACAGAATAGGGTGAACTTCATGTCGACTGATAACT

BS17042.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13874-PA 405 Obp56h-RA 1..405 421..17 2025 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56h-RB 495 CG13874-RB 24..428 421..17 2025 100 Minus
Obp56h-RA 593 CG13874-RA 24..428 421..17 2025 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19815687..19816039 369..17 1765 100 Minus
2R 25286936 2R 19815577..19815630 421..368 270 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:06:24 has no hits.

BS17042.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:59:33 Download gff for BS17042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13874-PA 1..405 17..421 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:49:05 Download gff for BS17042.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp56h-RA 19..431 13..426 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:02 Download gff for BS17042.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp56h-RA 19..431 13..426 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:02 Download gff for BS17042.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19815689..19816042 13..367 99   Minus
2R 19815572..19815630 368..426 96 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:49:05 Download gff for BS17042.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15703077..15703135 368..426 96 -> Minus
arm_2R 15703194..15703547 13..367 99   Minus

BS17042.5prime Sequence

435 bp (435 high quality bases) assembled on 2007-05-15

> BS17042.5prime
GAAGTTATCAGTCGACATGAAGTTCACCCTATTCTGTATTGCTCTGGCAG
CTTTTTTGTCCATGGGACAGTGTAATCCGGACTTTCGCCAAATAATGCAA
CAGTGCATGGAGACCAACCAAGTGACCGAGGCTGATCTCAAGGAGTTCAT
GGCCAGCGGGATGCAGAGCAGTGCCAAGGAGAACCTCAAGTGCTACACCA
AGTGCCTGATGGAGAAGCAGGGTCATCTCACCAATGGCCAGTTCAATGCT
CAGGCTATGCTCGACACTCTCAAAAATGTGCCTCAGATCAAGGACAAAAT
GGACGAGATTTCCTCGGGAGTGAATGCCTGCAAGGACATCAAGGGAACCA
ACGATTGCGACACGGCCTTTAAGGTTACCATGTGCCTGAAGGAGCACAAG
GCCATTCCAGGACATCACTAAAAGCTTTCTAGACC

BS17042.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG13874-PA 405 Obp56h-RA 1..405 17..421 2025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56h-RB 495 CG13874-RB 24..428 17..421 2025 100 Plus
Obp56h-RA 593 CG13874-RA 24..428 17..421 2025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19815687..19816039 69..421 1765 100 Plus
2R 25286936 2R 19815577..19815630 17..70 270 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:29:31 has no hits.

BS17042.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:55:41 Download gff for BS17042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13874-PA 1..405 17..421 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:17:10 Download gff for BS17042.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp56h-RA 19..431 12..425 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:59:45 Download gff for BS17042.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp56h-RA 19..431 12..425 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:59:45 Download gff for BS17042.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19815572..19815630 12..70 96 -> Plus
2R 19815689..19816042 71..425 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:17:10 Download gff for BS17042.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15703077..15703135 12..70 96 -> Plus
arm_2R 15703194..15703547 71..425 99   Plus

BS17042.complete Sequence

437 bp assembled on 2007-05-08

GenBank Submission: FJ638230

> BS17042.complete
GAAGTTATCAGTCGACATGAAGTTCACCCTATTCTGTATTGCTCTGGCAG
CTTTTTTGTCCATGGGACAGTGTAATCCGGACTTTCGCCAAATAATGCAA
CAGTGCATGGAGACCAACCAAGTGACCGAGGCTGATCTCAAGGAGTTCAT
GGCCAGCGGGATGCAGAGCAGTGCCAAGGAGAACCTCAAGTGCTACACCA
AGTGCCTGATGGAGAAGCAGGGTCATCTCACCAATGGCCAGTTCAATGCT
CAGGCTATGCTCGACACTCTCAAAAATGTGCCTCAGATCAAGGACAAAAT
GGACGAGATTTCCTCGGGAGTGAATGCCTGCAAGGACATCAAGGGAACCA
ACGATTGCGACACGGCCTTTAAGGTTACCATGTGCCTGAAGGAGCACAAG
GCCATTCCAGGACATCACTAAAAGCTTTCTAGACCAT

BS17042.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56h-RB 405 CG13874-PB 1..405 17..421 2025 100 Plus
Obp56h-RA 405 CG13874-PA 1..405 17..421 2025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56h-RB 495 CG13874-RB 24..428 17..421 2025 100 Plus
Obp56h-RA 593 CG13874-RA 24..428 17..421 2025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19815687..19816039 69..421 1765 100 Plus
2R 25286936 2R 19815577..19815630 17..70 270 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:39:16 has no hits.

BS17042.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:07 Download gff for BS17042.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56h-RA 1..405 17..421 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:07 Download gff for BS17042.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56h-RA 1..405 17..421 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:28 Download gff for BS17042.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56h-RA 24..426 17..419 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:08 Download gff for BS17042.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56h-RA 1..405 17..421 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:30 Download gff for BS17042.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56h-RA 24..426 17..419 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:30 Download gff for BS17042.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19815577..19815630 17..70 100 -> Plus
2R 19815689..19816037 71..419 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:28 Download gff for BS17042.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15703194..15703542 71..419 100   Plus
arm_2R 15703082..15703135 17..70 100 -> Plus

BS17042.pep Sequence

Translation from 16 to 420

> BS17042.pep
MKFTLFCIALAAFLSMGQCNPDFRQIMQQCMETNQVTEADLKEFMASGMQ
SSAKENLKCYTKCLMEKQGHLTNGQFNAQAMLDTLKNVPQIKDKMDEISS
GVNACKDIKGTNDCDTAFKVTMCLKEHKAIPGHH*

BS17042.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56h-PB 134 CG13874-PB 1..134 1..134 715 100 Plus
Obp56h-PA 134 CG13874-PA 1..134 1..134 715 100 Plus
Obp56g-PA 131 CG13873-PA 1..128 1..125 153 28.2 Plus
Obp56g-PB 132 CG13873-PB 30..129 24..125 152 28.2 Plus
Obp56a-PA 139 CG11797-PA 16..135 8..131 141 28 Plus