Clone Sequence Records
BS17042.3prime Sequence
435 bp (435 high quality bases) assembled on 2007-05-15
> BS17042.3prime
ATGGTCTAGAAAGCTTTTAGTGATGTCCTGGAATGGCCTTGTGCTCCTTC
AGGCACATGGTAACCTTAAAGGCCGTGTCGCAATCGTTGGTTCCCTTGAT
GTCCTTGCAGGCATTCACTCCCGAGGAAATCTCGTCCATTTTGTCCTTGA
TCTGAGGCACATTTTTGAGAGTGTCGAGCATAGCCTGAGCATTGAACTGG
CCATTGGTGAGATGACCCTGCTTCTCCATCAGGCACTTGGTGTAGCACTT
GAGGTTCTCCTTGGCACTGCTCTGCATCCCGCTGGCCATGAACTCCTTGA
GATCAGCCTCGGTCACTTGGTTGGTCTCCATGCACTGTTGCATTATTTGG
CGAAAGTCCGGATTACACTGTCCCATGGACAAAAAAGCTGCCAGAGCAAT
ACAGAATAGGGTGAACTTCATGTCGACTGATAACT
BS17042.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:59:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13874-PA | 405 | Obp56h-RA | 1..405 | 421..17 | 2025 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:06:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56h-RB | 495 | CG13874-RB | 24..428 | 421..17 | 2025 | 100 | Minus |
Obp56h-RA | 593 | CG13874-RA | 24..428 | 421..17 | 2025 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:06:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19815687..19816039 | 369..17 | 1765 | 100 | Minus |
2R | 25286936 | 2R | 19815577..19815630 | 421..368 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:06:24 has no hits.
BS17042.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:59:33 Download gff for
BS17042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13874-PA | 1..405 | 17..421 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:49:05 Download gff for
BS17042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56h-RA | 19..431 | 13..426 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:02 Download gff for
BS17042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56h-RA | 19..431 | 13..426 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:02 Download gff for
BS17042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19815689..19816042 | 13..367 | 99 | | Minus |
2R | 19815572..19815630 | 368..426 | 96 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:49:05 Download gff for
BS17042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15703077..15703135 | 368..426 | 96 | -> | Minus |
arm_2R | 15703194..15703547 | 13..367 | 99 | | Minus |
BS17042.5prime Sequence
435 bp (435 high quality bases) assembled on 2007-05-15
> BS17042.5prime
GAAGTTATCAGTCGACATGAAGTTCACCCTATTCTGTATTGCTCTGGCAG
CTTTTTTGTCCATGGGACAGTGTAATCCGGACTTTCGCCAAATAATGCAA
CAGTGCATGGAGACCAACCAAGTGACCGAGGCTGATCTCAAGGAGTTCAT
GGCCAGCGGGATGCAGAGCAGTGCCAAGGAGAACCTCAAGTGCTACACCA
AGTGCCTGATGGAGAAGCAGGGTCATCTCACCAATGGCCAGTTCAATGCT
CAGGCTATGCTCGACACTCTCAAAAATGTGCCTCAGATCAAGGACAAAAT
GGACGAGATTTCCTCGGGAGTGAATGCCTGCAAGGACATCAAGGGAACCA
ACGATTGCGACACGGCCTTTAAGGTTACCATGTGCCTGAAGGAGCACAAG
GCCATTCCAGGACATCACTAAAAGCTTTCTAGACC
BS17042.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:55:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13874-PA | 405 | Obp56h-RA | 1..405 | 17..421 | 2025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:29:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56h-RB | 495 | CG13874-RB | 24..428 | 17..421 | 2025 | 100 | Plus |
Obp56h-RA | 593 | CG13874-RA | 24..428 | 17..421 | 2025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:29:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19815687..19816039 | 69..421 | 1765 | 100 | Plus |
2R | 25286936 | 2R | 19815577..19815630 | 17..70 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:29:31 has no hits.
BS17042.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:55:41 Download gff for
BS17042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13874-PA | 1..405 | 17..421 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:17:10 Download gff for
BS17042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56h-RA | 19..431 | 12..425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:59:45 Download gff for
BS17042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56h-RA | 19..431 | 12..425 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:59:45 Download gff for
BS17042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19815572..19815630 | 12..70 | 96 | -> | Plus |
2R | 19815689..19816042 | 71..425 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:17:10 Download gff for
BS17042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15703077..15703135 | 12..70 | 96 | -> | Plus |
arm_2R | 15703194..15703547 | 71..425 | 99 | | Plus |
BS17042.complete Sequence
437 bp assembled on 2007-05-08
GenBank Submission: FJ638230
> BS17042.complete
GAAGTTATCAGTCGACATGAAGTTCACCCTATTCTGTATTGCTCTGGCAG
CTTTTTTGTCCATGGGACAGTGTAATCCGGACTTTCGCCAAATAATGCAA
CAGTGCATGGAGACCAACCAAGTGACCGAGGCTGATCTCAAGGAGTTCAT
GGCCAGCGGGATGCAGAGCAGTGCCAAGGAGAACCTCAAGTGCTACACCA
AGTGCCTGATGGAGAAGCAGGGTCATCTCACCAATGGCCAGTTCAATGCT
CAGGCTATGCTCGACACTCTCAAAAATGTGCCTCAGATCAAGGACAAAAT
GGACGAGATTTCCTCGGGAGTGAATGCCTGCAAGGACATCAAGGGAACCA
ACGATTGCGACACGGCCTTTAAGGTTACCATGTGCCTGAAGGAGCACAAG
GCCATTCCAGGACATCACTAAAAGCTTTCTAGACCAT
BS17042.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56h-RB | 405 | CG13874-PB | 1..405 | 17..421 | 2025 | 100 | Plus |
Obp56h-RA | 405 | CG13874-PA | 1..405 | 17..421 | 2025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56h-RB | 495 | CG13874-RB | 24..428 | 17..421 | 2025 | 100 | Plus |
Obp56h-RA | 593 | CG13874-RA | 24..428 | 17..421 | 2025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19815687..19816039 | 69..421 | 1765 | 100 | Plus |
2R | 25286936 | 2R | 19815577..19815630 | 17..70 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:39:16 has no hits.
BS17042.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:07 Download gff for
BS17042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56h-RA | 1..405 | 17..421 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:07 Download gff for
BS17042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56h-RA | 1..405 | 17..421 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:28 Download gff for
BS17042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56h-RA | 24..426 | 17..419 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:08 Download gff for
BS17042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56h-RA | 1..405 | 17..421 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:30 Download gff for
BS17042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56h-RA | 24..426 | 17..419 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:30 Download gff for
BS17042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19815577..19815630 | 17..70 | 100 | -> | Plus |
2R | 19815689..19816037 | 71..419 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:28 Download gff for
BS17042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15703194..15703542 | 71..419 | 100 | | Plus |
arm_2R | 15703082..15703135 | 17..70 | 100 | -> | Plus |
BS17042.pep Sequence
Translation from 16 to 420
> BS17042.pep
MKFTLFCIALAAFLSMGQCNPDFRQIMQQCMETNQVTEADLKEFMASGMQ
SSAKENLKCYTKCLMEKQGHLTNGQFNAQAMLDTLKNVPQIKDKMDEISS
GVNACKDIKGTNDCDTAFKVTMCLKEHKAIPGHH*
BS17042.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56h-PB | 134 | CG13874-PB | 1..134 | 1..134 | 715 | 100 | Plus |
Obp56h-PA | 134 | CG13874-PA | 1..134 | 1..134 | 715 | 100 | Plus |
Obp56g-PA | 131 | CG13873-PA | 1..128 | 1..125 | 153 | 28.2 | Plus |
Obp56g-PB | 132 | CG13873-PB | 30..129 | 24..125 | 152 | 28.2 | Plus |
Obp56a-PA | 139 | CG11797-PA | 16..135 | 8..131 | 141 | 28 | Plus |