Clone Sequence Records
BS17043.3prime Sequence
495 bp (495 high quality bases) assembled on 2007-05-15
> BS17043.3prime
ATGGTCTAGAAAGCTTCTAGTACTTGTTAATGTTGAACAGCCGCACGCCG
TGGAACTGCGGCAGCTTGGGAAGCGTGACGACCACCAGGGATATAAAGTT
TGGGATAAAGTGTTCCGTGTTGTTTCGGGTGTACAGACAGGTAAGTAGGA
AAAGAACAATGGGAACAGCTGTGAGGAACTTGCGCGTTGTGGTCATCTGT
ACCCCGTCATCGATCTGTTCCCAGTGCGTCCAACGCCGGCTGGGATCGTT
CTCCGTGCTCAGCCAGGGAGCGCCCTTGATGACGTGCAGAAAGTACAGGT
GGGCTGCATTGTGAAGCAGGTTGGTAGCCGTCCAGGCCCATGGAATGCTA
ACGAAGGGCACTGATAAGAAGAGCAGGTGCACCGACAGCAGGCCCAGGAG
GTATGCTAGCCAAAATCCCCGGGCACTCAGCCAGGAGCTGTTTGGATTCG
CCTCGCCGTGGCCTCCCGCAATGGACGTCATGTCGACTGATAACT
BS17043.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14577-PA | 465 | ORMDL-RA | 1..465 | 481..17 | 2325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:55:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ORMDL-RA | 674 | CG14577-RA | 79..545 | 483..17 | 2335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:55:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21635383..21635562 | 483..304 | 900 | 100 | Minus |
3L | 28110227 | 3L | 21635618..21635769 | 304..153 | 760 | 100 | Minus |
3L | 28110227 | 3L | 21635987..21636122 | 152..17 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:55:23 has no hits.
BS17043.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:06 Download gff for
BS17043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14577-PA | 1..465 | 17..481 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:34:45 Download gff for
BS17043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ORMDL-RA | 70..547 | 12..495 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:03 Download gff for
BS17043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ORMDL-RA | 70..547 | 12..495 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:03 Download gff for
BS17043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21635374..21635561 | 305..495 | 97 | -> | Minus |
3L | 21635618..21635769 | 153..304 | 100 | -> | Minus |
3L | 21635987..21636124 | 12..152 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:34:45 Download gff for
BS17043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21628474..21628661 | 305..495 | 97 | -> | Minus |
arm_3L | 21628718..21628869 | 153..304 | 100 | -> | Minus |
arm_3L | 21629087..21629224 | 12..152 | 97 | | Minus |
BS17043.5prime Sequence
495 bp (495 high quality bases) assembled on 2007-05-15
> BS17043.5prime
GAAGTTATCAGTCGACATGACGTCCATTGCGGGAGGCCACGGCGAGGCGA
ATCCAAACAGCTCCTGGCTGAGTGCCCGGGGATTTTGGCTAGCATACCTC
CTGGGCCTGCTGTCGGTGCACCTGCTCTTCTTATCAGTGCCCTTCGTTAG
CATTCCATGGGCCTGGACGGCTACCAACCTGCTTCACAATGCAGCCCACC
TGTACTTTCTGCACGTCATCAAGGGCGCTCCCTGGCTGAGCACGGAGAAC
GATCCCAGCCGGCGTTGGACGCACTGGGAACAGATCGATGACGGGGTACA
GATGACCACAACGCGCAAGTTCCTCACAGCTGTTCCCATTGTTCTTTTCC
TACTTACCTGTCTGTACACCCGAAACAACACGGAACACTTTATCCCAAAC
TTTATATCCCTGGTGGTCGTCACGCTTCCCAAGCTGCCGCAGTTCCACGG
CGTGCGGCTGTTCAACATTAACAAGTACTAGAAGCTTTCTAGACC
BS17043.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:53:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14577-PA | 465 | ORMDL-RA | 1..465 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:56:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ORMDL-RA | 674 | CG14577-RA | 79..545 | 15..481 | 2335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:56:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21635383..21635562 | 15..194 | 900 | 100 | Plus |
3L | 28110227 | 3L | 21635618..21635769 | 194..345 | 760 | 100 | Plus |
3L | 28110227 | 3L | 21635987..21636122 | 346..481 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 16:56:44 has no hits.
BS17043.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:53:27 Download gff for
BS17043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14577-PA | 1..465 | 17..481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 19:00:16 Download gff for
BS17043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ORMDL-RA | 70..547 | 2..486 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:24:25 Download gff for
BS17043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ORMDL-RA | 70..547 | 2..486 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:24:25 Download gff for
BS17043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21635987..21636124 | 346..486 | 97 | | Plus |
3L | 21635618..21635769 | 194..345 | 100 | -> | Plus |
3L | 21635374..21635561 | 2..193 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 19:00:16 Download gff for
BS17043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21628474..21628661 | 2..193 | 97 | -> | Plus |
arm_3L | 21628718..21628869 | 194..345 | 100 | -> | Plus |
arm_3L | 21629087..21629224 | 346..486 | 97 | | Plus |
BS17043.complete Sequence
497 bp assembled on 2007-05-08
GenBank Submission: FJ638231
> BS17043.complete
GAAGTTATCAGTCGACATGACGTCCATTGCGGGAGGCCACGGCGAGGCGA
ATCCAAACAGCTCCTGGCTGAGTGCCCGGGGATTTTGGCTAGCATACCTC
CTGGGCCTGCTGTCGGTGCACCTGCTCTTCTTATCAGTGCCCTTCGTTAG
CATTCCATGGGCCTGGACGGCTACCAACCTGCTTCACAATGCAGCCCACC
TGTACTTTCTGCACGTCATCAAGGGCGCTCCCTGGCTGAGCACGGAGAAC
GATCCCAGCCGGCGTTGGACGCACTGGGAACAGATCGATGACGGGGTACA
GATGACCACAACGCGCAAGTTCCTCACAGCTGTTCCCATTGTTCTTTTCC
TACTTACCTGTCTGTACACCCGAAACAACACGGAACACTTTATCCCAAAC
TTTATATCCCTGGTGGTCGTCACGCTTCCCAAGCTGCCGCAGTTCCACGG
CGTGCGGCTGTTCAACATTAACAAGTACTAGAAGCTTTCTAGACCAT
BS17043.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ORMDL-RA | 465 | CG14577-PA | 1..465 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ORMDL-RA | 674 | CG14577-RA | 79..545 | 15..481 | 2335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:57:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21635383..21635562 | 15..194 | 900 | 100 | Plus |
3L | 28110227 | 3L | 21635618..21635769 | 194..345 | 760 | 100 | Plus |
3L | 28110227 | 3L | 21635987..21636122 | 346..481 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:57:56 has no hits.
BS17043.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:09 Download gff for
BS17043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ORMDL-RA | 1..465 | 17..481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:08 Download gff for
BS17043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ORMDL-RA | 1..465 | 17..481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:20 Download gff for
BS17043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ORMDL-RA | 81..545 | 17..481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:09 Download gff for
BS17043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ORMDL-RA | 1..465 | 17..481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:14 Download gff for
BS17043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ORMDL-RA | 81..545 | 17..481 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:14 Download gff for
BS17043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21635618..21635769 | 194..345 | 100 | -> | Plus |
3L | 21635987..21636122 | 346..481 | 100 | | Plus |
3L | 21635385..21635561 | 17..193 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:20 Download gff for
BS17043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21628718..21628869 | 194..345 | 100 | -> | Plus |
arm_3L | 21629087..21629222 | 346..481 | 100 | | Plus |
arm_3L | 21628485..21628661 | 17..193 | 100 | -> | Plus |
BS17043.pep Sequence
Translation from 16 to 480
> BS17043.pep
MTSIAGGHGEANPNSSWLSARGFWLAYLLGLLSVHLLFLSVPFVSIPWAW
TATNLLHNAAHLYFLHVIKGAPWLSTENDPSRRWTHWEQIDDGVQMTTTR
KFLTAVPIVLFLLTCLYTRNNTEHFIPNFISLVVVTLPKLPQFHGVRLFN
INKY*
BS17043.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ORMDL-PA | 154 | CG14577-PA | 1..154 | 1..154 | 835 | 100 | Plus |