Clone BS17043 Report

Search the DGRC for BS17043

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:170
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptORMDL-RA
Protein status:BS17043.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17043.3prime Sequence

495 bp (495 high quality bases) assembled on 2007-05-15

> BS17043.3prime
ATGGTCTAGAAAGCTTCTAGTACTTGTTAATGTTGAACAGCCGCACGCCG
TGGAACTGCGGCAGCTTGGGAAGCGTGACGACCACCAGGGATATAAAGTT
TGGGATAAAGTGTTCCGTGTTGTTTCGGGTGTACAGACAGGTAAGTAGGA
AAAGAACAATGGGAACAGCTGTGAGGAACTTGCGCGTTGTGGTCATCTGT
ACCCCGTCATCGATCTGTTCCCAGTGCGTCCAACGCCGGCTGGGATCGTT
CTCCGTGCTCAGCCAGGGAGCGCCCTTGATGACGTGCAGAAAGTACAGGT
GGGCTGCATTGTGAAGCAGGTTGGTAGCCGTCCAGGCCCATGGAATGCTA
ACGAAGGGCACTGATAAGAAGAGCAGGTGCACCGACAGCAGGCCCAGGAG
GTATGCTAGCCAAAATCCCCGGGCACTCAGCCAGGAGCTGTTTGGATTCG
CCTCGCCGTGGCCTCCCGCAATGGACGTCATGTCGACTGATAACT

BS17043.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14577-PA 465 ORMDL-RA 1..465 481..17 2325 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
ORMDL-RA 674 CG14577-RA 79..545 483..17 2335 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21635383..21635562 483..304 900 100 Minus
3L 28110227 3L 21635618..21635769 304..153 760 100 Minus
3L 28110227 3L 21635987..21636122 152..17 680 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:55:23 has no hits.

BS17043.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:06 Download gff for BS17043.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14577-PA 1..465 17..481 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:34:45 Download gff for BS17043.3prime
Subject Subject Range Query Range Percent Splice Strand
ORMDL-RA 70..547 12..495 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:03 Download gff for BS17043.3prime
Subject Subject Range Query Range Percent Splice Strand
ORMDL-RA 70..547 12..495 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:03 Download gff for BS17043.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21635374..21635561 305..495 97 -> Minus
3L 21635618..21635769 153..304 100 -> Minus
3L 21635987..21636124 12..152 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:34:45 Download gff for BS17043.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21628474..21628661 305..495 97 -> Minus
arm_3L 21628718..21628869 153..304 100 -> Minus
arm_3L 21629087..21629224 12..152 97   Minus

BS17043.5prime Sequence

495 bp (495 high quality bases) assembled on 2007-05-15

> BS17043.5prime
GAAGTTATCAGTCGACATGACGTCCATTGCGGGAGGCCACGGCGAGGCGA
ATCCAAACAGCTCCTGGCTGAGTGCCCGGGGATTTTGGCTAGCATACCTC
CTGGGCCTGCTGTCGGTGCACCTGCTCTTCTTATCAGTGCCCTTCGTTAG
CATTCCATGGGCCTGGACGGCTACCAACCTGCTTCACAATGCAGCCCACC
TGTACTTTCTGCACGTCATCAAGGGCGCTCCCTGGCTGAGCACGGAGAAC
GATCCCAGCCGGCGTTGGACGCACTGGGAACAGATCGATGACGGGGTACA
GATGACCACAACGCGCAAGTTCCTCACAGCTGTTCCCATTGTTCTTTTCC
TACTTACCTGTCTGTACACCCGAAACAACACGGAACACTTTATCCCAAAC
TTTATATCCCTGGTGGTCGTCACGCTTCCCAAGCTGCCGCAGTTCCACGG
CGTGCGGCTGTTCAACATTAACAAGTACTAGAAGCTTTCTAGACC

BS17043.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG14577-PA 465 ORMDL-RA 1..465 17..481 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
ORMDL-RA 674 CG14577-RA 79..545 15..481 2335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21635383..21635562 15..194 900 100 Plus
3L 28110227 3L 21635618..21635769 194..345 760 100 Plus
3L 28110227 3L 21635987..21636122 346..481 680 100 Plus
Blast to na_te.dros performed on 2015-01-30 16:56:44 has no hits.

BS17043.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:53:27 Download gff for BS17043.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14577-PA 1..465 17..481 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 19:00:16 Download gff for BS17043.5prime
Subject Subject Range Query Range Percent Splice Strand
ORMDL-RA 70..547 2..486 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:24:25 Download gff for BS17043.5prime
Subject Subject Range Query Range Percent Splice Strand
ORMDL-RA 70..547 2..486 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:24:25 Download gff for BS17043.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21635987..21636124 346..486 97   Plus
3L 21635618..21635769 194..345 100 -> Plus
3L 21635374..21635561 2..193 97 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 19:00:16 Download gff for BS17043.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21628474..21628661 2..193 97 -> Plus
arm_3L 21628718..21628869 194..345 100 -> Plus
arm_3L 21629087..21629224 346..486 97   Plus

BS17043.complete Sequence

497 bp assembled on 2007-05-08

GenBank Submission: FJ638231

> BS17043.complete
GAAGTTATCAGTCGACATGACGTCCATTGCGGGAGGCCACGGCGAGGCGA
ATCCAAACAGCTCCTGGCTGAGTGCCCGGGGATTTTGGCTAGCATACCTC
CTGGGCCTGCTGTCGGTGCACCTGCTCTTCTTATCAGTGCCCTTCGTTAG
CATTCCATGGGCCTGGACGGCTACCAACCTGCTTCACAATGCAGCCCACC
TGTACTTTCTGCACGTCATCAAGGGCGCTCCCTGGCTGAGCACGGAGAAC
GATCCCAGCCGGCGTTGGACGCACTGGGAACAGATCGATGACGGGGTACA
GATGACCACAACGCGCAAGTTCCTCACAGCTGTTCCCATTGTTCTTTTCC
TACTTACCTGTCTGTACACCCGAAACAACACGGAACACTTTATCCCAAAC
TTTATATCCCTGGTGGTCGTCACGCTTCCCAAGCTGCCGCAGTTCCACGG
CGTGCGGCTGTTCAACATTAACAAGTACTAGAAGCTTTCTAGACCAT

BS17043.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
ORMDL-RA 465 CG14577-PA 1..465 17..481 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
ORMDL-RA 674 CG14577-RA 79..545 15..481 2335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21635383..21635562 15..194 900 100 Plus
3L 28110227 3L 21635618..21635769 194..345 760 100 Plus
3L 28110227 3L 21635987..21636122 346..481 680 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:57:56 has no hits.

BS17043.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:09 Download gff for BS17043.complete
Subject Subject Range Query Range Percent Splice Strand
ORMDL-RA 1..465 17..481 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:08 Download gff for BS17043.complete
Subject Subject Range Query Range Percent Splice Strand
ORMDL-RA 1..465 17..481 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:20 Download gff for BS17043.complete
Subject Subject Range Query Range Percent Splice Strand
ORMDL-RA 81..545 17..481 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:09 Download gff for BS17043.complete
Subject Subject Range Query Range Percent Splice Strand
ORMDL-RA 1..465 17..481 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:14 Download gff for BS17043.complete
Subject Subject Range Query Range Percent Splice Strand
ORMDL-RA 81..545 17..481 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:14 Download gff for BS17043.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21635618..21635769 194..345 100 -> Plus
3L 21635987..21636122 346..481 100   Plus
3L 21635385..21635561 17..193 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:20 Download gff for BS17043.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21628718..21628869 194..345 100 -> Plus
arm_3L 21629087..21629222 346..481 100   Plus
arm_3L 21628485..21628661 17..193 100 -> Plus

BS17043.pep Sequence

Translation from 16 to 480

> BS17043.pep
MTSIAGGHGEANPNSSWLSARGFWLAYLLGLLSVHLLFLSVPFVSIPWAW
TATNLLHNAAHLYFLHVIKGAPWLSTENDPSRRWTHWEQIDDGVQMTTTR
KFLTAVPIVLFLLTCLYTRNNTEHFIPNFISLVVVTLPKLPQFHGVRLFN
INKY*

BS17043.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
ORMDL-PA 154 CG14577-PA 1..154 1..154 835 100 Plus