Clone Sequence Records
BS17044.3prime Sequence
378 bp (378 high quality bases) assembled on 2007-05-15
> BS17044.3prime
ATGGTCTAGAAAGCTTTTAGAGCGCCGAGGCTCTCCGCGAGGCGACACTG
CTCCTCCAGGATTCGTCGAGCACACGGTTGTCCTGGATCAGAATGATCGT
GTGCTCGTTCTCGGTGGCCACCATCGTCTCCTGGCGGCGGGTGCGCAGCC
GCACGTAACTCAGCTCGTCCCCATTCTCCAAATCCTGCACCATGGATCGG
GCCAGAATCACCAGTGGCCTCATCCGATCGGCGTATATGCGGGCCACATT
CGCTGGCAAATTGGTCCGCACCGGAACTCCATTGCCATCGATCAGGATTG
CCCCCGTCACGCCTGGCAGCTGAACCAGCCGATCGAAGGTCATCTGCACA
GTGTTTGACGCCATGTCGACTGATAACT
BS17044.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15171-PA | 348 | robl37BC-RA | 1..348 | 364..17 | 1740 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:49:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
robl37BC-RA | 667 | CG15171-RA | 130..478 | 365..17 | 1745 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:49:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19010995..19011343 | 365..17 | 1745 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:49:34 has no hits.
BS17044.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:14 Download gff for
BS17044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15171-PA | 1..348 | 17..364 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:13 Download gff for
BS17044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl37BC-RA | 127..488 | 6..371 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:34 Download gff for
BS17044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl37BC-RA | 127..488 | 6..371 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:34 Download gff for
BS17044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19010992..19011353 | 6..371 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:13 Download gff for
BS17044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19010992..19011353 | 6..371 | 98 | | Minus |
BS17044.5prime Sequence
378 bp (378 high quality bases) assembled on 2007-05-15
> BS17044.5prime
GAAGTTATCAGTCGACATGGCGTCAAACACTGTGCAGATGACCTTCGATC
GGCTGGTTCAGCTGCCAGGCGTGACGGGGGCAATCCTGATCGATGGCAAT
GGAGTTCCGGTGCGGACCAATTTGCCAGCGAATGTGGCCCGCATATACGC
CGATCGGATGAGGCCACTGGTGATTCTGGCCCGATCCATGGTGCAGGATT
TGGAGAATGGGGACGAGCTGAGTTACGTGCGGCTGCGCACCCGCCGCCAG
GAGACGATGGTGGCCACCGAGAACGAGCACACGATCATTCTGATCCAGGA
CAACCGTGTGCTCGACGAATCCTGGAGGAGCAGTGTCGCCTCGCGGAGAG
CCTCGGCGCTCTAAAAGCTTTCTAGACC
BS17044.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:53:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15171-PA | 348 | robl37BC-RA | 1..348 | 17..364 | 1740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:18:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
robl37BC-RA | 667 | CG15171-RA | 130..478 | 16..364 | 1745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:18:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19010995..19011343 | 16..364 | 1745 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:18:04 has no hits.
BS17044.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:53:36 Download gff for
BS17044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15171-PA | 1..348 | 17..364 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:33:37 Download gff for
BS17044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl37BC-RA | 127..488 | 10..375 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:15 Download gff for
BS17044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl37BC-RA | 127..488 | 10..375 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:15 Download gff for
BS17044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19010992..19011353 | 10..375 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:33:37 Download gff for
BS17044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19010992..19011353 | 10..375 | 98 | | Plus |
BS17044.complete Sequence
380 bp assembled on 2007-05-08
GenBank Submission: FJ638232
> BS17044.complete
GAAGTTATCAGTCGACATGGCGTCAAACACTGTGCAGATGACCTTCGATC
GGCTGGTTCAGCTGCCAGGCGTGACGGGGGCAATCCTGATCGATGGCAAT
GGAGTTCCGGTGCGGACCAATTTGCCAGCGAATGTGGCCCGCATATACGC
CGATCGGATGAGGCCACTGGTGATTCTGGCCCGATCCATGGTGCAGGATT
TGGAGAATGGGGACGAGCTGAGTTACGTGCGGCTGCGCACCCGCCGCCAG
GAGACGATGGTGGCCACCGAGAACGAGCACACGATCATTCTGATCCAGGA
CAACCGTGTGCTCGACGAATCCTGGAGGAGCAGTGTCGCCTCGCGGAGAG
CCTCGGCGCTCTAAAAGCTTTCTAGACCAT
BS17044.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:24:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
robl37BC-RA | 348 | CG15171-PA | 1..348 | 17..364 | 1740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:24:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
robl37BC-RA | 667 | CG15171-RA | 130..478 | 16..364 | 1745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:24:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19010995..19011343 | 16..364 | 1745 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:24:28 has no hits.
BS17044.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:10 Download gff for
BS17044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl37BC-RA | 1..348 | 17..364 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:10 Download gff for
BS17044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl37BC-RA | 1..348 | 17..364 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:24 Download gff for
BS17044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl37BC-RA | 131..476 | 17..362 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:10 Download gff for
BS17044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl37BC-RA | 1..348 | 17..364 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:54 Download gff for
BS17044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl37BC-RA | 131..476 | 17..362 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:54 Download gff for
BS17044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19010996..19011341 | 17..362 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:24 Download gff for
BS17044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19010996..19011341 | 17..362 | 100 | | Plus |
BS17044.pep Sequence
Translation from 16 to 363
> BS17044.pep
MASNTVQMTFDRLVQLPGVTGAILIDGNGVPVRTNLPANVARIYADRMRP
LVILARSMVQDLENGDELSYVRLRTRRQETMVATENEHTIILIQDNRVLD
ESWRSSVASRRASAL*
BS17044.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:26:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
robl37BC-PA | 115 | CG15171-PA | 1..115 | 1..115 | 567 | 100 | Plus |
robl-PA | 97 | CG10751-PA | 2..94 | 3..95 | 155 | 33.3 | Plus |
robl22E-PB | 97 | CG10838-PB | 2..93 | 3..94 | 143 | 31.5 | Plus |
robl22E-PA | 97 | CG10838-PA | 2..93 | 3..94 | 143 | 31.5 | Plus |