Clone BS17044 Report

Search the DGRC for BS17044

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:170
Well:44
Vector:pDNR-Dual
Associated Gene/Transcriptrobl37BC-RA
Protein status:BS17044.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17044.3prime Sequence

378 bp (378 high quality bases) assembled on 2007-05-15

> BS17044.3prime
ATGGTCTAGAAAGCTTTTAGAGCGCCGAGGCTCTCCGCGAGGCGACACTG
CTCCTCCAGGATTCGTCGAGCACACGGTTGTCCTGGATCAGAATGATCGT
GTGCTCGTTCTCGGTGGCCACCATCGTCTCCTGGCGGCGGGTGCGCAGCC
GCACGTAACTCAGCTCGTCCCCATTCTCCAAATCCTGCACCATGGATCGG
GCCAGAATCACCAGTGGCCTCATCCGATCGGCGTATATGCGGGCCACATT
CGCTGGCAAATTGGTCCGCACCGGAACTCCATTGCCATCGATCAGGATTG
CCCCCGTCACGCCTGGCAGCTGAACCAGCCGATCGAAGGTCATCTGCACA
GTGTTTGACGCCATGTCGACTGATAACT

BS17044.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG15171-PA 348 robl37BC-RA 1..348 364..17 1740 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
robl37BC-RA 667 CG15171-RA 130..478 365..17 1745 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19010995..19011343 365..17 1745 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:49:34 has no hits.

BS17044.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:14 Download gff for BS17044.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15171-PA 1..348 17..364 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:13 Download gff for BS17044.3prime
Subject Subject Range Query Range Percent Splice Strand
robl37BC-RA 127..488 6..371 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:34 Download gff for BS17044.3prime
Subject Subject Range Query Range Percent Splice Strand
robl37BC-RA 127..488 6..371 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:34 Download gff for BS17044.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19010992..19011353 6..371 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:13 Download gff for BS17044.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19010992..19011353 6..371 98   Minus

BS17044.5prime Sequence

378 bp (378 high quality bases) assembled on 2007-05-15

> BS17044.5prime
GAAGTTATCAGTCGACATGGCGTCAAACACTGTGCAGATGACCTTCGATC
GGCTGGTTCAGCTGCCAGGCGTGACGGGGGCAATCCTGATCGATGGCAAT
GGAGTTCCGGTGCGGACCAATTTGCCAGCGAATGTGGCCCGCATATACGC
CGATCGGATGAGGCCACTGGTGATTCTGGCCCGATCCATGGTGCAGGATT
TGGAGAATGGGGACGAGCTGAGTTACGTGCGGCTGCGCACCCGCCGCCAG
GAGACGATGGTGGCCACCGAGAACGAGCACACGATCATTCTGATCCAGGA
CAACCGTGTGCTCGACGAATCCTGGAGGAGCAGTGTCGCCTCGCGGAGAG
CCTCGGCGCTCTAAAAGCTTTCTAGACC

BS17044.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG15171-PA 348 robl37BC-RA 1..348 17..364 1740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
robl37BC-RA 667 CG15171-RA 130..478 16..364 1745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:18:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19010995..19011343 16..364 1745 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:18:04 has no hits.

BS17044.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:53:36 Download gff for BS17044.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15171-PA 1..348 17..364 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:33:37 Download gff for BS17044.5prime
Subject Subject Range Query Range Percent Splice Strand
robl37BC-RA 127..488 10..375 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:15 Download gff for BS17044.5prime
Subject Subject Range Query Range Percent Splice Strand
robl37BC-RA 127..488 10..375 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:15 Download gff for BS17044.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19010992..19011353 10..375 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:33:37 Download gff for BS17044.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19010992..19011353 10..375 98   Plus

BS17044.complete Sequence

380 bp assembled on 2007-05-08

GenBank Submission: FJ638232

> BS17044.complete
GAAGTTATCAGTCGACATGGCGTCAAACACTGTGCAGATGACCTTCGATC
GGCTGGTTCAGCTGCCAGGCGTGACGGGGGCAATCCTGATCGATGGCAAT
GGAGTTCCGGTGCGGACCAATTTGCCAGCGAATGTGGCCCGCATATACGC
CGATCGGATGAGGCCACTGGTGATTCTGGCCCGATCCATGGTGCAGGATT
TGGAGAATGGGGACGAGCTGAGTTACGTGCGGCTGCGCACCCGCCGCCAG
GAGACGATGGTGGCCACCGAGAACGAGCACACGATCATTCTGATCCAGGA
CAACCGTGTGCTCGACGAATCCTGGAGGAGCAGTGTCGCCTCGCGGAGAG
CCTCGGCGCTCTAAAAGCTTTCTAGACCAT

BS17044.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
robl37BC-RA 348 CG15171-PA 1..348 17..364 1740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
robl37BC-RA 667 CG15171-RA 130..478 16..364 1745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19010995..19011343 16..364 1745 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:24:28 has no hits.

BS17044.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:10 Download gff for BS17044.complete
Subject Subject Range Query Range Percent Splice Strand
robl37BC-RA 1..348 17..364 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:10 Download gff for BS17044.complete
Subject Subject Range Query Range Percent Splice Strand
robl37BC-RA 1..348 17..364 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:24 Download gff for BS17044.complete
Subject Subject Range Query Range Percent Splice Strand
robl37BC-RA 131..476 17..362 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:10 Download gff for BS17044.complete
Subject Subject Range Query Range Percent Splice Strand
robl37BC-RA 1..348 17..364 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:54 Download gff for BS17044.complete
Subject Subject Range Query Range Percent Splice Strand
robl37BC-RA 131..476 17..362 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:54 Download gff for BS17044.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19010996..19011341 17..362 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:24 Download gff for BS17044.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19010996..19011341 17..362 100   Plus

BS17044.pep Sequence

Translation from 16 to 363

> BS17044.pep
MASNTVQMTFDRLVQLPGVTGAILIDGNGVPVRTNLPANVARIYADRMRP
LVILARSMVQDLENGDELSYVRLRTRRQETMVATENEHTIILIQDNRVLD
ESWRSSVASRRASAL*

BS17044.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
robl37BC-PA 115 CG15171-PA 1..115 1..115 567 100 Plus
robl-PA 97 CG10751-PA 2..94 3..95 155 33.3 Plus
robl22E-PB 97 CG10838-PB 2..93 3..94 143 31.5 Plus
robl22E-PA 97 CG10838-PA 2..93 3..94 143 31.5 Plus