Clone Sequence Records
BS17046.3prime Sequence
768 bp (768 high quality bases) assembled on 2007-05-15
> BS17046.3prime
ATGGTCTAGAAAGCTTTTAAAGCTGTTCAATAGCATTTAAGATCCAAGGT
TTCAGCTCAGCCACATTGGCGTAGACTCCGGGAAAGAACGGATTGGCGCA
TCCAATGCCGTAGGAGACAATGCCAACTAGTTGGCCACCGGAGACGAGAG
GTCCGCCGGAGTCTCCATGACAGGAATCTTTTAAGAGAGCGGCGGCGCAA
ATCATAGTTTTGGTGATGTACTGATAGGACCGCTTACAAACATTCGGGTC
TAGTATTTTCACTGAGGTTTTCAATAGAGATGTAGGTTGTAGCCAGAGGA
TTCCGATTTCTCCCCAACCAGAAACCGAAGCTTCAGTTCCAGCTGCGGGT
GCACTATCGGCCAGTTGGATAGGTCTTACTTCGGCATTGAAAATTAGAGT
GTCCACCAGTCTAATTACGGCTATATCGTTGAACAAAATGGTGGAAGATA
CGTAGTCTTCATGCTTCCGAATTACAGCAACCCTGGCGTGCTGTCCACCC
AAGTTTTTCCATACGGATCCAACTCTGACGGAATACAGTGTATCGAAGGG
TCTTTCAACACAGTGGGCTGCTGTTATAATGATCTTGTCACTGTAGATAA
CTGCACCGCAAATGTATTTTTCCGAATACATGAGAGCCGCCTGCCAAGGA
ACTTCTGAAATAAGCACAGGGTGGCCACCCACTATTCGCTCCGGAGAAGA
TCCTGCCGAGATCAGGGTGACGCTGGCGACCAGAACAAGCCAGTGGAGGA
GCATGTCGACTGATAACT
BS17046.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:59:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17240-PA | 738 | Ser12-RA | 1..738 | 754..17 | 3690 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:33:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ser12-RA | 845 | CG17240-RA | 6..743 | 754..17 | 3690 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:33:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2250533..2251270 | 17..754 | 3690 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:33:21 has no hits.
BS17046.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:59:20 Download gff for
BS17046.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17240-PA | 1..738 | 17..754 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:19:03 Download gff for
BS17046.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ser12-RA | 1..743 | 17..759 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:41:08 Download gff for
BS17046.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ser12-RA | 1..743 | 17..759 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:41:08 Download gff for
BS17046.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2250533..2251275 | 17..763 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:19:03 Download gff for
BS17046.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2250533..2251275 | 17..763 | 99 | | Plus |
BS17046.5prime Sequence
768 bp (768 high quality bases) assembled on 2007-05-15
> BS17046.5prime
GAAGTTATCAGTCGACATGCTCCTCCACTGGCTTGTTCTGGTCGCCAGCG
TCACCCTGATCTCGGCAGGATCTTCTCCGGAGCGAATAGTGGGTGGCCAC
CCTGTGCTTATTTCAGAAGTTCCTTGGCAGGCGGCTCTCATGTATTCGGA
AAAATACATTTGCGGTGCAGTTATCTACAGTGACAAGATCATTATAACAG
CAGCCCACTGTGTTGAAAGACCCTTCGATACACTGTATTCCGTCAGAGTT
GGATCCGTATGGAAAAACTTGGGTGGACAGCACGCCAGGGTTGCTGTAAT
TCGGAAGCATGAAGACTACGTATCTTCCACCATTTTGTTCAACGATATAG
CCGTAATTAGACTGGTGGACACTCTAATTTTCAATGCCGAAGTAAGACCT
ATCCAACTGGCCGATAGTGCACCCGCAGCTGGAACTGAAGCTTCGGTTTC
TGGTTGGGGAGAAATCGGAATCCTCTGGCTACAACCTACATCTCTATTGA
AAACCTCAGTGAAAATACTAGACCCGAATGTTTGTAAGCGGTCCTATCAG
TACATCACCAAAACTATGATTTGCGCCGCCGCTCTCTTAAAAGATTCCTG
TCATGGAGACTCCGGCGGACCTCTCGTCTCCGGTGGCCAACTAGTTGGCA
TTGTCTCCTACGGCATTGGATGCGCCAATCCGTTCTTTCCCGGAGTCTAC
GCCAATGTGGCTGAGCTGAAACCTTGGATCTTAAATGCTATTGAACAGCT
TTAAAAGCTTTCTAGACC
BS17046.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:55:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17240-PA | 738 | Ser12-RA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:11:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ser12-RA | 845 | CG17240-RA | 6..743 | 17..754 | 3690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:11:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2250533..2251270 | 754..17 | 3690 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:11:23 has no hits.
BS17046.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:55:27 Download gff for
BS17046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17240-PA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:29:55 Download gff for
BS17046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ser12-RA | 1..743 | 12..754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:53:22 Download gff for
BS17046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ser12-RA | 1..743 | 12..754 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:53:22 Download gff for
BS17046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2250533..2251275 | 8..754 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:29:55 Download gff for
BS17046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2250533..2251275 | 8..754 | 99 | | Minus |
BS17046.complete Sequence
770 bp assembled on 2007-05-08
GenBank Submission: FJ638234
> BS17046.complete
GAAGTTATCAGTCGACATGCTCCTCCACTGGCTTGTTCTGGTCGCCAGCG
TCACCCTGATCTCGGCAGGATCTTCTCCGGAGCGAATAGTGGGTGGCCAC
CCTGTGCTTATTTCAGAAGTTCCTTGGCAGGCGGCTCTCATGTATTCGGA
AAAATACATTTGCGGTGCAGTTATCTACAGTGACAAGATCATTATAACAG
CAGCCCACTGTGTTGAAAGACCCTTCGATACACTGTATTCCGTCAGAGTT
GGATCCGTATGGAAAAACTTGGGTGGACAGCACGCCAGGGTTGCTGTAAT
TCGGAAGCATGAAGACTACGTATCTTCCACCATTTTGTTCAACGATATAG
CCGTAATTAGACTGGTGGACACTCTAATTTTCAATGCCGAAGTAAGACCT
ATCCAACTGGCCGATAGTGCACCCGCAGCTGGAACTGAAGCTTCGGTTTC
TGGTTGGGGAGAAATCGGAATCCTCTGGCTACAACCTACATCTCTATTGA
AAACCTCAGTGAAAATACTAGACCCGAATGTTTGTAAGCGGTCCTATCAG
TACATCACCAAAACTATGATTTGCGCCGCCGCTCTCTTAAAAGATTCCTG
TCATGGAGACTCCGGCGGACCTCTCGTCTCCGGTGGCCAACTAGTTGGCA
TTGTCTCCTACGGCATTGGATGCGCCAATCCGTTCTTTCCCGGAGTCTAC
GCCAATGTGGCTGAGCTGAAACCTTGGATCTTAAATGCTATTGAACAGCT
TTAAAAGCTTTCTAGACCAT
BS17046.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:19:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ser12-RA | 738 | CG17240-PA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:19:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ser12-RA | 845 | CG17240-RA | 6..743 | 17..754 | 3690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:19:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2250533..2251270 | 754..17 | 3690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:19:42 has no hits.
BS17046.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:13 Download gff for
BS17046.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ser12-RA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:01:14 Download gff for
BS17046.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ser12-RA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:12:07 Download gff for
BS17046.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ser12-RA | 6..741 | 17..752 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:13 Download gff for
BS17046.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ser12-RA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:19 Download gff for
BS17046.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ser12-RA | 6..741 | 17..752 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:19 Download gff for
BS17046.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2250535..2251270 | 17..752 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:12:07 Download gff for
BS17046.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2250535..2251270 | 17..752 | 100 | | Minus |
BS17046.pep Sequence
Translation from 16 to 753
> BS17046.pep
MLLHWLVLVASVTLISAGSSPERIVGGHPVLISEVPWQAALMYSEKYICG
AVIYSDKIIITAAHCVERPFDTLYSVRVGSVWKNLGGQHARVAVIRKHED
YVSSTILFNDIAVIRLVDTLIFNAEVRPIQLADSAPAAGTEASVSGWGEI
GILWLQPTSLLKTSVKILDPNVCKRSYQYITKTMICAAALLKDSCHGDSG
GPLVSGGQLVGIVSYGIGCANPFFPGVYANVAELKPWILNAIEQL*
BS17046.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ser12-PA | 245 | CG17240-PA | 1..245 | 1..245 | 1269 | 100 | Plus |
| CG17239-PB | 248 | CG17239-PB | 1..244 | 1..245 | 630 | 54.1 | Plus |
| CG17239-PA | 248 | CG17239-PA | 1..244 | 1..245 | 630 | 54.1 | Plus |
| CG30025-PA | 253 | CG30025-PA | 1..251 | 2..240 | 492 | 43.3 | Plus |
| betaTry-PB | 253 | CG18211-PB | 1..251 | 2..240 | 491 | 44.4 | Plus |
