Clone Sequence Records
BS17047.3prime Sequence
249 bp (249 high quality bases) assembled on 2007-05-15
> BS17047.3prime
ATGGTCTAGAAAGCTTCTAAAAAGGACAGCACCGCTGAAGGCCATTTCGT
TTTTCCATAGTGCCACAGCACGGTCCACAGGGTCCGCAAGGGCCACAACG
AGGTCCACAGGGGCCACAGCAGGGCCCGCAAGGTCCACAACAGGGTCCAC
AACAGGGTCCACAACAGGGTCCACAACAGGGTCCGCAACACGGTCCACAG
GGTCCGCAGCAAGGTCCGCCCGGTGCACAGCCCATGTCGACTGATAACT
BS17047.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:59:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17935-PA | 219 | Mst84Dd-RA | 1..219 | 235..17 | 1095 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:05:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mst84Dd-RA | 415 | CG17935-RA | 104..324 | 237..17 | 1105 | 100 | Minus |
Mst84Dc-RB | 359 | CG17945-RB | 87..196 | 211..102 | 215 | 80.5 | Minus |
Mst84Dc-RA | 363 | CG17945-RA | 91..200 | 211..102 | 215 | 80.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:05:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7363398..7363618 | 17..237 | 1105 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:05:33 has no hits.
BS17047.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:59:29 Download gff for
BS17047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17935-PA | 1..219 | 17..235 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:20:02 Download gff for
BS17047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst84Dd-RA | 104..324 | 17..237 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:57 Download gff for
BS17047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst84Dd-RA | 104..324 | 17..237 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:57 Download gff for
BS17047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7363398..7363618 | 17..237 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:20:02 Download gff for
BS17047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3189120..3189340 | 17..237 | 100 | | Plus |
BS17047.5prime Sequence
249 bp (249 high quality bases) assembled on 2007-05-15
> BS17047.5prime
GAAGTTATCAGTCGACATGGGCTGTGCACCGGGCGGACCTTGCTGCGGAC
CCTGTGGACCGTGTTGCGGACCCTGTTGTGGACCCTGTTGTGGACCCTGT
TGTGGACCCTGTTGTGGACCTTGCGGGCCCTGCTGTGGCCCCTGTGGACC
TCGTTGTGGCCCTTGCGGACCCTGTGGACCGTGCTGTGGCACTATGGAAA
AACGAAATGGCCTTCAGCGGTGCTGTCCTTTTTAGAAGCTTTCTAGACC
BS17047.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:55:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17935-PA | 219 | Mst84Dd-RA | 1..219 | 17..235 | 1095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:30:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mst84Dd-RA | 415 | CG17935-RA | 104..324 | 15..235 | 1105 | 100 | Plus |
Mst84Dc-RB | 359 | CG17945-RB | 87..196 | 41..150 | 215 | 80.5 | Plus |
Mst84Dc-RA | 363 | CG17945-RA | 91..200 | 41..150 | 215 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:30:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7363398..7363618 | 235..15 | 1105 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:30:30 has no hits.
BS17047.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:55:36 Download gff for
BS17047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17935-PA | 1..219 | 17..235 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:00:49 Download gff for
BS17047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst84Dd-RA | 104..324 | 15..235 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:06:40 Download gff for
BS17047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst84Dd-RA | 104..324 | 15..235 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:06:40 Download gff for
BS17047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7363398..7363618 | 15..235 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:00:49 Download gff for
BS17047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3189120..3189340 | 15..235 | 100 | | Minus |
BS17047.complete Sequence
251 bp assembled on 2007-05-08
GenBank Submission: FJ638235
> BS17047.complete
GAAGTTATCAGTCGACATGGGCTGTGCACCGGGCGGACCTTGCTGCGGAC
CCTGTGGACCGTGTTGCGGACCCTGTTGTGGACCCTGTTGTGGACCCTGT
TGTGGACCCTGTTGTGGACCTTGCGGGCCCTGCTGTGGCCCCTGTGGACC
TCGTTGTGGCCCTTGCGGACCCTGTGGACCGTGCTGTGGCACTATGGAAA
AACGAAATGGCCTTCAGCGGTGCTGTCCTTTTTAGAAGCTTTCTAGACCA
T
BS17047.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:16:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mst84Dd-RA | 219 | CG17935-PA | 1..219 | 17..235 | 1095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mst84Dd-RA | 415 | CG17935-RA | 104..324 | 15..235 | 1105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7363398..7363618 | 235..15 | 1105 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:16:03 has no hits.
BS17047.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:56 Download gff for
BS17047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst84Dd-RA | 1..219 | 17..235 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:12:59 Download gff for
BS17047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst84Dd-RA | 104..324 | 15..235 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:33 Download gff for
BS17047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst84Dd-RA | 106..324 | 17..235 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:56 Download gff for
BS17047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst84Dd-RA | 104..324 | 15..235 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:46 Download gff for
BS17047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst84Dd-RA | 106..324 | 17..235 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:46 Download gff for
BS17047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7363398..7363616 | 17..235 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:33 Download gff for
BS17047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3189120..3189338 | 17..235 | 100 | | Minus |
BS17047.pep Sequence
Translation from 16 to 234
> BS17047.pep
MGCAPGGPCCGPCGPCCGPCCGPCCGPCCGPCCGPCGPCCGPCGPRCGPC
GPCGPCCGTMEKRNGLQRCCPF*
BS17047.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mst84Dd-PA | 72 | CG17935-PA | 1..72 | 1..72 | 510 | 100 | Plus |
Mst84Db-PA | 74 | CG17934-PA | 9..66 | 3..58 | 265 | 71.7 | Plus |
Mst84Dc-PB | 55 | CG17945-PB | 2..51 | 9..58 | 259 | 80.8 | Plus |
Mst84Dc-PA | 55 | CG17945-PA | 2..51 | 9..58 | 259 | 80.8 | Plus |
Mst84Db-PA | 74 | CG17934-PA | 12..73 | 3..58 | 257 | 70.3 | Plus |
Mst87F-PB | 56 | CG17956-PB | 2..52 | 9..58 | 257 | 79.2 | Plus |
Mst84Db-PA | 74 | CG17934-PA | 2..65 | 9..70 | 224 | 61.2 | Plus |
Mst84Dc-PB | 55 | CG17945-PB | 16..53 | 7..43 | 201 | 79.5 | Plus |
Mst84Dc-PA | 55 | CG17945-PA | 16..53 | 7..43 | 201 | 79.5 | Plus |
Mst84Dc-PB | 55 | CG17945-PB | 1..53 | 1..50 | 195 | 63.6 | Plus |
Mst84Dc-PA | 55 | CG17945-PA | 1..53 | 1..50 | 195 | 63.6 | Plus |