Clone BS17051 Report

Search the DGRC for BS17051

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:170
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptObp56i-RA
Protein status:BS17051.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17051.3prime Sequence

453 bp (453 high quality bases) assembled on 2007-05-15

> BS17051.3prime
ATGGTCTAGAAAGCTTTTATCCTCTGTGATTTCGAGTTCTTTGGCCCTTC
TTAACATCTGATAATCTTACTCCTTCGTAGCACTCGGAGATTTGCCAGGC
GAATTCACAAGACTCGTCATGGGATGTCTCGCTCTTAATCATATTACACG
TCGCTTCCATTCGCTCTACGGCTTCCGCGGTAACTATATGGCCTAGAACT
CGGTCAAAAGCACCGGGTATTATCTGGTTATCGGCGATAATGCCAATGTT
TTCTAGAAAACAGCGGAAAAAGCACTTGACACTATGGCCAGGGTCGTCGG
TCTCATGACGATTCGCAACATCTTGTGCTGTGATGCCCGCCGCCGCCATG
CATTGATCCTTAATGGGACCTGCTTGTACGAAACATGTTGGTAATGTAAC
GACGACTAACAATAATGCACAGCAGGTGAAAAAATGCATGTCGACTGATA
ACT

BS17051.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG30448-PA 423 Obp56i-RA 1..423 439..17 2115 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56i-RA 569 CG30448-RA 29..452 439..16 2120 100 Minus
Obp56i-RB 938 CG30448-RB 458..821 379..16 1820 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19868234..19868597 379..16 1820 100 Minus
2R 25286936 2R 19868116..19868178 439..377 315 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:50:47 has no hits.

BS17051.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:45 Download gff for BS17051.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30448-PA 1..423 17..439 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:25 Download gff for BS17051.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp56i-RA 29..452 16..439 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:22 Download gff for BS17051.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp56i-RA 29..452 16..439 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:22 Download gff for BS17051.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19868116..19868175 380..439 100 -> Minus
2R 19868234..19868597 16..379 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:25 Download gff for BS17051.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15755621..15755680 380..439 100 -> Minus
arm_2R 15755739..15756102 16..379 100   Minus

BS17051.5prime Sequence

453 bp (453 high quality bases) assembled on 2007-05-15

> BS17051.5prime
GAAGTTATCAGTCGACATGCATTTTTTCACCTGCTGTGCATTATTGTTAG
TCGTCGTTACATTACCAACATGTTTCGTACAAGCAGGTCCCATTAAGGAT
CAATGCATGGCGGCGGCGGGCATCACAGCACAAGATGTTGCGAATCGTCA
TGAGACCGACGACCCTGGCCATAGTGTCAAGTGCTTTTTCCGCTGTTTTC
TAGAAAACATTGGCATTATCGCCGATAACCAGATAATACCCGGTGCTTTT
GACCGAGTTCTAGGCCATATAGTTACCGCGGAAGCCGTAGAGCGAATGGA
AGCGACGTGTAATATGATTAAGAGCGAGACATCCCATGACGAGTCTTGTG
AATTCGCCTGGCAAATCTCCGAGTGCTACGAAGGAGTAAGATTATCAGAT
GTTAAGAAGGGCCAAAGAACTCGAAATCACAGAGGATAAAAGCTTTCTAG
ACC

BS17051.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG30448-PA 423 Obp56i-RA 1..423 17..439 2115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56i-RA 569 CG30448-RA 29..452 17..440 2120 100 Plus
Obp56i-RB 938 CG30448-RB 458..821 77..440 1820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19868234..19868597 77..440 1820 100 Plus
2R 25286936 2R 19868116..19868178 17..79 315 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:09:02 has no hits.

BS17051.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:54:06 Download gff for BS17051.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30448-PA 1..423 17..439 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:29:42 Download gff for BS17051.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp56i-RA 29..452 17..440 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:46:38 Download gff for BS17051.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp56i-RA 29..452 17..440 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:46:38 Download gff for BS17051.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19868116..19868175 17..76 100 -> Plus
2R 19868234..19868597 77..440 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:29:42 Download gff for BS17051.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15755621..15755680 17..76 100 -> Plus
arm_2R 15755739..15756102 77..440 100   Plus

BS17051.complete Sequence

455 bp assembled on 2007-05-08

GenBank Submission: FJ638236

> BS17051.complete
GAAGTTATCAGTCGACATGCATTTTTTCACCTGCTGTGCATTATTGTTAG
TCGTCGTTACATTACCAACATGTTTCGTACAAGCAGGTCCCATTAAGGAT
CAATGCATGGCGGCGGCGGGCATCACAGCACAAGATGTTGCGAATCGTCA
TGAGACCGACGACCCTGGCCATAGTGTCAAGTGCTTTTTCCGCTGTTTTC
TAGAAAACATTGGCATTATCGCCGATAACCAGATAATACCCGGTGCTTTT
GACCGAGTTCTAGGCCATATAGTTACCGCGGAAGCCGTAGAGCGAATGGA
AGCGACGTGTAATATGATTAAGAGCGAGACATCCCATGACGAGTCTTGTG
AATTCGCCTGGCAAATCTCCGAGTGCTACGAAGGAGTAAGATTATCAGAT
GTTAAGAAGGGCCAAAGAACTCGAAATCACAGAGGATAAAAGCTTTCTAG
ACCAT

BS17051.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:45
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56i-RA 423 CG30448-PA 1..423 17..439 2115 100 Plus
Obp56i-RB 390 CG30448-PB 28..390 77..439 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56i-RA 569 CG30448-RA 29..452 17..440 2120 100 Plus
Obp56i-RB 938 CG30448-RB 458..821 77..440 1820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19868234..19868597 77..440 1820 100 Plus
2R 25286936 2R 19868116..19868178 17..79 315 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:45:44 has no hits.

BS17051.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:16 Download gff for BS17051.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56i-RA 1..423 17..439 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:53:53 Download gff for BS17051.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56i-RA 1..423 17..439 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:11 Download gff for BS17051.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56i-RA 29..449 17..437 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:16 Download gff for BS17051.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56i-RA 1..423 17..439 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:21 Download gff for BS17051.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56i-RA 29..449 17..437 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:21 Download gff for BS17051.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19868116..19868175 17..76 100 -> Plus
2R 19868234..19868594 77..437 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:11 Download gff for BS17051.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15755621..15755680 17..76 100 -> Plus
arm_2R 15755739..15756099 77..437 100   Plus

BS17051.pep Sequence

Translation from 16 to 438

> BS17051.pep
MHFFTCCALLLVVVTLPTCFVQAGPIKDQCMAAAGITAQDVANRHETDDP
GHSVKCFFRCFLENIGIIADNQIIPGAFDRVLGHIVTAEAVERMEATCNM
IKSETSHDESCEFAWQISECYEGVRLSDVKKGQRTRNHRG*

BS17051.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56i-PA 140 CG30448-PA 1..140 1..140 753 100 Plus
Obp56i-PB 129 CG30448-PB 1..129 12..140 644 94.6 Plus
Obp56d-PB 131 CG11218-PB 35..124 19..121 136 32 Plus
Obp56d-PA 131 CG11218-PA 35..124 19..121 136 32 Plus