Clone Sequence Records
BS17055.3prime Sequence
693 bp (693 high quality bases) assembled on 2007-05-15
> BS17055.3prime
ATGGTCTAGAAAGCTTTTACTCGATAGCGTCCACAAGCTTGCACAACATG
CGATCGTGCTGGTAACTGGGATCATTCTTGGCCGCCGCATTCGCCTCCAA
CGGATCCACCTCCGTCTTAATCTTTGCTCCGCCGCTATCGTCGTCATCAT
CTAGAACCGGCAGAGCTGAGAAGGCGGTATTAACGATCTCGCGCACACGT
TCCAAGTGCTTTTGGAAACGGGCGGCGGTCTCAACGCGCTGCCGCTTCTG
CATTTCCATCATGACGCGCAGCGTTTCCCTCGCCTGATGTGGGCGAAATT
CATTGAGGAGGTGATGCATGTTGACGAACAGCAGACTGATATCGTCAATC
TTTTCCGTGCGCCGCGGGCTGTCAGGATTCAGGATAAGAAAGTCAATGAG
ATCTAGGAAGTTGACCAAGAGGGAGTGGTTAAGCTTCTTGAGCTCCTTGC
GCCGATCGAAATGGATGGGGATCAGTCGCTTAATATTCTGGGACTCCAAG
CTGCGGATCATCTCGTCGTTGTTGTACTGGATGCCAAACATGCTATAGAC
TTCGTGCTGCGCCGGCGGCGGCGGTGGGCGTGGCGCTCGGTTGCGGCGGA
TATTCTCGTCCGTGTAATTGGCGATGTACCGCTCCGGCGGCATCGGCAGG
CTGGAAACCTGGGTCTCCTGGTTGGACATGTCGACTGATAACT
BS17055.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31390-PA | 663 | MED7-RA | 1..663 | 679..17 | 3315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:16:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED7-RA | 901 | CG31390-RA | 100..762 | 679..17 | 3315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:16:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10760210..10760544 | 17..351 | 1675 | 100 | Plus |
3R | 32079331 | 3R | 10760604..10760933 | 350..679 | 1650 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:16:47 has no hits.
BS17055.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:31 Download gff for
BS17055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31390-PA | 1..663 | 17..679 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:49:40 Download gff for
BS17055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED7-RA | 95..765 | 12..688 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:58 Download gff for
BS17055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED7-RA | 95..765 | 12..688 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:58 Download gff for
BS17055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10760207..10760542 | 12..349 | 99 | <- | Plus |
3R | 10760604..10760938 | 350..688 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:49:40 Download gff for
BS17055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6585929..6586264 | 12..349 | 99 | <- | Plus |
arm_3R | 6586326..6586660 | 350..688 | 98 | | Plus |
BS17055.5prime Sequence
693 bp (693 high quality bases) assembled on 2007-05-15
> BS17055.5prime
GAAGTTATCAGTCGACATGTCCAACCAGGAGACCCAGGTTTCCAGCCTGC
CGATGCCGCCGGAGCGGTACATCGCCAATTACACGGACGAGAATATCCGC
CGCAACCGAGCGCCACGCCCACCGCCGCCGCCGGCGCAGCACGAAGTCTA
TAGCATGTTTGGCATCCAGTACAACAACGACGAGATGATCCGCAGCTTGG
AGTCCCAGAATATTAAGCGACTGATCCCCATCCATTTCGATCGGCGCAAG
GAGCTCAAGAAGCTTAACCACTCCCTCTTGGTCAACTTCCTAGATCTCAT
TGACTTTCTTATCCTGAATCCTGACAGCCCGCGGCGCACGGAAAAGATTG
ACGATATCAGTCTGCTGTTCGTCAACATGCATCACCTCCTCAATGAATTT
CGCCCACATCAGGCGAGGGAAACGCTGCGCGTCATGATGGAAATGCAGAA
GCGGCAGCGCGTTGAGACCGCCGCCCGTTTCCAAAAGCACTTGGAACGTG
TGCGCGAGATCGTTAATACCGCCTTCTCAGCTCTGCCGGTTCTAGATGAT
GACGACGATAGCGGCGGAGCAAAGATTAAGACGGAGGTGGATCCGTTGGA
GGCGAATGCGGCGGCCAAGAATGATCCCAGTTACCAGCACGATCGCATGT
TGTGCAAGCTTGTGGACGCTATCGAGTAAAAGCTTTCTAGACC
BS17055.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:53:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31390-PA | 663 | MED7-RA | 1..663 | 17..679 | 3315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:55:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED7-RA | 901 | CG31390-RA | 100..762 | 17..679 | 3315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:55:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10760210..10760544 | 679..345 | 1675 | 100 | Minus |
3R | 32079331 | 3R | 10760604..10760933 | 346..17 | 1650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:55:57 has no hits.
BS17055.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:53:53 Download gff for
BS17055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31390-PA | 1..663 | 17..679 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:11:38 Download gff for
BS17055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED7-RA | 95..765 | 8..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:19 Download gff for
BS17055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED7-RA | 95..765 | 8..684 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:19 Download gff for
BS17055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10760207..10760542 | 347..684 | 99 | <- | Minus |
3R | 10760604..10760938 | 8..346 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:11:38 Download gff for
BS17055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6585929..6586264 | 347..684 | 99 | <- | Minus |
arm_3R | 6586326..6586660 | 8..346 | 98 | | Minus |
BS17055.complete Sequence
695 bp assembled on 2007-05-08
> BS17055.complete
GAAGTTATCAGTCGACATGTCCAACCAGGAGACCCAGGTTTCCAGCCTGC
CGATGCCGCCGGAGCGGTACATCGCCAATTACACGGACGAGAATATCCGC
CGCAACCGAGCGCCACGCCCACCGCCGCCGCCGGCGCAGCACGAAGTCTA
TAGCATGTTTGGCATCCAGTACAACAACGACGAGATGATCCGCAGCTTGG
AGTCCCAGAATATTAAGCGACTGATCCCCATCCATTTCGATCGGCGCAAG
GAGCTCAAGAAGCTTAACCACTCCCTCTTGGTCAACTTCCTAGATCTCAT
TGACTTTCTTATCCTGAATCCTGACAGCCCGCGGCGCACGGAAAAGATTG
ACGATATCAGTCTGCTGTTCGTCAACATGCATCACCTCCTCAATGAATTT
CGCCCACATCAGGCGAGGGAAACGCTGCGCGTCATGATGGAAATGCAGAA
GCGGCAGCGCGTTGAGACCGCCGCCCGTTTCCAAAAGCACTTGGAACGTG
TGCGCGAGATCGTTAATACCGCCTTCTCAGCTCTGCCGGTTCTAGATGAT
GACGACGATAGCGGCGGAGCAAAGATTAAGACGGAGGTGGATCCGTTGGA
GGCGAATGCGGCGGCCAAGAATGATCCCAGTTACCAGCACGATCGCATGT
TGTGCAAGCTTGTGGACGCTATCGAGTAAAAGCTTTCTAGACCAT
BS17055.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED7-RA | 663 | CG31390-PA | 1..663 | 17..679 | 3315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED7-RA | 901 | CG31390-RA | 100..762 | 17..679 | 3315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10760210..10760544 | 679..345 | 1675 | 100 | Minus |
3R | 32079331 | 3R | 10760604..10760933 | 346..17 | 1650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:37:44 has no hits.
BS17055.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:28 Download gff for
BS17055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED7-RA | 1..663 | 17..679 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:18 Download gff for
BS17055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED7-RA | 1..666 | 17..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:18 Download gff for
BS17055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED7-RA | 100..760 | 17..677 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:28 Download gff for
BS17055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED7-RA | 1..666 | 17..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:24 Download gff for
BS17055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED7-RA | 100..760 | 17..677 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:24 Download gff for
BS17055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10760212..10760542 | 347..677 | 100 | <- | Minus |
3R | 10760604..10760933 | 17..346 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:18 Download gff for
BS17055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6585934..6586264 | 347..677 | 100 | <- | Minus |
arm_3R | 6586326..6586655 | 17..346 | 100 | | Minus |
BS17055.pep Sequence
Translation from 16 to 678
> BS17055.pep
MSNQETQVSSLPMPPERYIANYTDENIRRNRAPRPPPPPAQHEVYSMFGI
QYNNDEMIRSLESQNIKRLIPIHFDRRKELKKLNHSLLVNFLDLIDFLIL
NPDSPRRTEKIDDISLLFVNMHHLLNEFRPHQARETLRVMMEMQKRQRVE
TAARFQKHLERVREIVNTAFSALPVLDDDDDSGGAKIKTEVDPLEANAAA
KNDPSYQHDRMLCKLVDAIE*
BS17055.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED7-PA | 220 | CG31390-PA | 1..220 | 1..220 | 1140 | 100 | Plus |