Clone BS17055 Report

Search the DGRC for BS17055

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:170
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptMED7-RA
Protein status:BS17055.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17055.3prime Sequence

693 bp (693 high quality bases) assembled on 2007-05-15

> BS17055.3prime
ATGGTCTAGAAAGCTTTTACTCGATAGCGTCCACAAGCTTGCACAACATG
CGATCGTGCTGGTAACTGGGATCATTCTTGGCCGCCGCATTCGCCTCCAA
CGGATCCACCTCCGTCTTAATCTTTGCTCCGCCGCTATCGTCGTCATCAT
CTAGAACCGGCAGAGCTGAGAAGGCGGTATTAACGATCTCGCGCACACGT
TCCAAGTGCTTTTGGAAACGGGCGGCGGTCTCAACGCGCTGCCGCTTCTG
CATTTCCATCATGACGCGCAGCGTTTCCCTCGCCTGATGTGGGCGAAATT
CATTGAGGAGGTGATGCATGTTGACGAACAGCAGACTGATATCGTCAATC
TTTTCCGTGCGCCGCGGGCTGTCAGGATTCAGGATAAGAAAGTCAATGAG
ATCTAGGAAGTTGACCAAGAGGGAGTGGTTAAGCTTCTTGAGCTCCTTGC
GCCGATCGAAATGGATGGGGATCAGTCGCTTAATATTCTGGGACTCCAAG
CTGCGGATCATCTCGTCGTTGTTGTACTGGATGCCAAACATGCTATAGAC
TTCGTGCTGCGCCGGCGGCGGCGGTGGGCGTGGCGCTCGGTTGCGGCGGA
TATTCTCGTCCGTGTAATTGGCGATGTACCGCTCCGGCGGCATCGGCAGG
CTGGAAACCTGGGTCTCCTGGTTGGACATGTCGACTGATAACT

BS17055.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG31390-PA 663 MED7-RA 1..663 679..17 3315 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
MED7-RA 901 CG31390-RA 100..762 679..17 3315 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10760210..10760544 17..351 1675 100 Plus
3R 32079331 3R 10760604..10760933 350..679 1650 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:16:47 has no hits.

BS17055.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:31 Download gff for BS17055.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31390-PA 1..663 17..679 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:49:40 Download gff for BS17055.3prime
Subject Subject Range Query Range Percent Splice Strand
MED7-RA 95..765 12..688 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:31:58 Download gff for BS17055.3prime
Subject Subject Range Query Range Percent Splice Strand
MED7-RA 95..765 12..688 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:31:58 Download gff for BS17055.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10760207..10760542 12..349 99 <- Plus
3R 10760604..10760938 350..688 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:49:40 Download gff for BS17055.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6585929..6586264 12..349 99 <- Plus
arm_3R 6586326..6586660 350..688 98   Plus

BS17055.5prime Sequence

693 bp (693 high quality bases) assembled on 2007-05-15

> BS17055.5prime
GAAGTTATCAGTCGACATGTCCAACCAGGAGACCCAGGTTTCCAGCCTGC
CGATGCCGCCGGAGCGGTACATCGCCAATTACACGGACGAGAATATCCGC
CGCAACCGAGCGCCACGCCCACCGCCGCCGCCGGCGCAGCACGAAGTCTA
TAGCATGTTTGGCATCCAGTACAACAACGACGAGATGATCCGCAGCTTGG
AGTCCCAGAATATTAAGCGACTGATCCCCATCCATTTCGATCGGCGCAAG
GAGCTCAAGAAGCTTAACCACTCCCTCTTGGTCAACTTCCTAGATCTCAT
TGACTTTCTTATCCTGAATCCTGACAGCCCGCGGCGCACGGAAAAGATTG
ACGATATCAGTCTGCTGTTCGTCAACATGCATCACCTCCTCAATGAATTT
CGCCCACATCAGGCGAGGGAAACGCTGCGCGTCATGATGGAAATGCAGAA
GCGGCAGCGCGTTGAGACCGCCGCCCGTTTCCAAAAGCACTTGGAACGTG
TGCGCGAGATCGTTAATACCGCCTTCTCAGCTCTGCCGGTTCTAGATGAT
GACGACGATAGCGGCGGAGCAAAGATTAAGACGGAGGTGGATCCGTTGGA
GGCGAATGCGGCGGCCAAGAATGATCCCAGTTACCAGCACGATCGCATGT
TGTGCAAGCTTGTGGACGCTATCGAGTAAAAGCTTTCTAGACC

BS17055.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:53:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG31390-PA 663 MED7-RA 1..663 17..679 3315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:55:59
Subject Length Description Subject Range Query Range Score Percent Strand
MED7-RA 901 CG31390-RA 100..762 17..679 3315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10760210..10760544 679..345 1675 100 Minus
3R 32079331 3R 10760604..10760933 346..17 1650 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:55:57 has no hits.

BS17055.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:53:53 Download gff for BS17055.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31390-PA 1..663 17..679 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:11:38 Download gff for BS17055.5prime
Subject Subject Range Query Range Percent Splice Strand
MED7-RA 95..765 8..684 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:19 Download gff for BS17055.5prime
Subject Subject Range Query Range Percent Splice Strand
MED7-RA 95..765 8..684 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:19 Download gff for BS17055.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10760207..10760542 347..684 99 <- Minus
3R 10760604..10760938 8..346 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:11:38 Download gff for BS17055.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6585929..6586264 347..684 99 <- Minus
arm_3R 6586326..6586660 8..346 98   Minus

BS17055.complete Sequence

695 bp assembled on 2007-05-08

> BS17055.complete
GAAGTTATCAGTCGACATGTCCAACCAGGAGACCCAGGTTTCCAGCCTGC
CGATGCCGCCGGAGCGGTACATCGCCAATTACACGGACGAGAATATCCGC
CGCAACCGAGCGCCACGCCCACCGCCGCCGCCGGCGCAGCACGAAGTCTA
TAGCATGTTTGGCATCCAGTACAACAACGACGAGATGATCCGCAGCTTGG
AGTCCCAGAATATTAAGCGACTGATCCCCATCCATTTCGATCGGCGCAAG
GAGCTCAAGAAGCTTAACCACTCCCTCTTGGTCAACTTCCTAGATCTCAT
TGACTTTCTTATCCTGAATCCTGACAGCCCGCGGCGCACGGAAAAGATTG
ACGATATCAGTCTGCTGTTCGTCAACATGCATCACCTCCTCAATGAATTT
CGCCCACATCAGGCGAGGGAAACGCTGCGCGTCATGATGGAAATGCAGAA
GCGGCAGCGCGTTGAGACCGCCGCCCGTTTCCAAAAGCACTTGGAACGTG
TGCGCGAGATCGTTAATACCGCCTTCTCAGCTCTGCCGGTTCTAGATGAT
GACGACGATAGCGGCGGAGCAAAGATTAAGACGGAGGTGGATCCGTTGGA
GGCGAATGCGGCGGCCAAGAATGATCCCAGTTACCAGCACGATCGCATGT
TGTGCAAGCTTGTGGACGCTATCGAGTAAAAGCTTTCTAGACCAT

BS17055.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
MED7-RA 663 CG31390-PA 1..663 17..679 3315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
MED7-RA 901 CG31390-RA 100..762 17..679 3315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10760210..10760544 679..345 1675 100 Minus
3R 32079331 3R 10760604..10760933 346..17 1650 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:37:44 has no hits.

BS17055.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:28 Download gff for BS17055.complete
Subject Subject Range Query Range Percent Splice Strand
MED7-RA 1..663 17..679 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:18 Download gff for BS17055.complete
Subject Subject Range Query Range Percent Splice Strand
MED7-RA 1..666 17..684 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:18 Download gff for BS17055.complete
Subject Subject Range Query Range Percent Splice Strand
MED7-RA 100..760 17..677 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:28 Download gff for BS17055.complete
Subject Subject Range Query Range Percent Splice Strand
MED7-RA 1..666 17..684 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:24 Download gff for BS17055.complete
Subject Subject Range Query Range Percent Splice Strand
MED7-RA 100..760 17..677 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:24 Download gff for BS17055.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10760212..10760542 347..677 100 <- Minus
3R 10760604..10760933 17..346 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:18 Download gff for BS17055.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6585934..6586264 347..677 100 <- Minus
arm_3R 6586326..6586655 17..346 100   Minus

BS17055.pep Sequence

Translation from 16 to 678

> BS17055.pep
MSNQETQVSSLPMPPERYIANYTDENIRRNRAPRPPPPPAQHEVYSMFGI
QYNNDEMIRSLESQNIKRLIPIHFDRRKELKKLNHSLLVNFLDLIDFLIL
NPDSPRRTEKIDDISLLFVNMHHLLNEFRPHQARETLRVMMEMQKRQRVE
TAARFQKHLERVREIVNTAFSALPVLDDDDDSGGAKIKTEVDPLEANAAA
KNDPSYQHDRMLCKLVDAIE*

BS17055.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:52
Subject Length Description Subject Range Query Range Score Percent Strand
MED7-PA 220 CG31390-PA 1..220 1..220 1140 100 Plus