Clone Sequence Records
BS17056.3prime Sequence
420 bp (420 high quality bases) assembled on 2007-05-15
> BS17056.3prime
ATGGTCTAGAAAGCTTTTCTCCAGTAAAGAGCCTGGAAAGGCTGCCACCG
AGTTCTTCAAAGAATCCAACTGCAAGGCCTTGTGCCACTGGAGATAGGAT
TTTTCCGACGTACTTGGTCTTTCGCCCCCCCTGACTCGGAACTCCATCGA
TTAGAATTTCATCAGTATGCTCCTGAATGGATCTTTCAATCTTTTCCCTT
TGTTCAGGGGACAACGTGGGAGTCAGGCGCCTAAAGATATCGAGCAGCTC
TTGGGTTCGATTGATCTTCGATTCGGCGTCGTTGGAGGTTCGAATAATTT
CTGCAACCCTAAGGCTGTCAGATTCCCTTTCCTCGTCAGAATAGCCCAAG
CAAAAAGGACTAATCAGGAGCAGGGCAAGGCATAGTAGAGAAATGGAGGC
ATTCATGTCGACTGATAACT
BS17056.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31508-PA | 390 | TotC-RA | 1..387 | 406..20 | 1935 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:30:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotC-RA | 530 | CG31508-RA | 45..431 | 406..20 | 1935 | 100 | Minus |
TotA-RA | 579 | CG31509-RA | 66..395 | 382..53 | 390 | 75.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:30:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20873118..20873481 | 383..20 | 1820 | 100 | Minus |
3R | 32079331 | 3R | 20871187..20871516 | 382..53 | 390 | 74.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:30:11 has no hits.
BS17056.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:41 Download gff for
BS17056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31508-PA | 1..390 | 17..406 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:42:56 Download gff for
BS17056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotC-RA | 45..434 | 17..406 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:34:39 Download gff for
BS17056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotC-RA | 45..434 | 17..406 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:34:39 Download gff for
BS17056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20873032..20873054 | 384..406 | 100 | -> | Minus |
3R | 20873118..20873476 | 25..383 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:42:56 Download gff for
BS17056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16698754..16698776 | 384..406 | 100 | -> | Minus |
arm_3R | 16698840..16699198 | 25..383 | 100 | <- | Minus |
BS17056.5prime Sequence
420 bp (420 high quality bases) assembled on 2007-05-15
> BS17056.5prime
GAAGTTATCAGTCGACATGAATGCCTCCATTTCTCTACTATGCCTTGCCC
TGCTCCTGATTAGTCCTTTTTGCTTGGGCTATTCTGACGAGGAAAGGGAA
TCTGACAGCCTTAGGGTTGCAGAAATTATTCGAACCTCCAACGACGCCGA
ATCGAAGATCAATCGAACCCAAGAGCTGCTCGATATCTTTAGGCGCCTGA
CTCCCACGTTGTCCCCTGAACAAAGGGAAAAGATTGAAAGATCCATTCAG
GAGCATACTGATGAAATTCTAATCGATGGAGTTCCGAGTCAGGGGGGGCG
AAAGACCAAGTACGTCGGAAAAATCCTATCTCCAGTGGCACAAGGCCTTG
CAGTTGGATTCTTTGAAGAACTCGGTGGCAGCCTTTCCAGGCTCTTTACT
GGATAAAAGCTTTCTAGACC
BS17056.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:54:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31508-PA | 390 | TotC-RA | 1..390 | 17..406 | 1950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:22:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotC-RA | 530 | CG31508-RA | 45..434 | 17..406 | 1950 | 100 | Plus |
TotA-RA | 579 | CG31509-RA | 66..395 | 41..370 | 390 | 75.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:22:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20873118..20873484 | 40..406 | 1835 | 100 | Plus |
3R | 32079331 | 3R | 20871187..20871516 | 41..370 | 390 | 74.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:22:50 has no hits.
BS17056.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:54:02 Download gff for
BS17056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31508-PA | 1..390 | 17..406 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:41:29 Download gff for
BS17056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotC-RA | 45..443 | 17..414 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:50:40 Download gff for
BS17056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotC-RA | 45..443 | 17..414 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:50:40 Download gff for
BS17056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20873032..20873054 | 17..39 | 100 | -> | Plus |
3R | 20873118..20873493 | 40..414 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:41:29 Download gff for
BS17056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16698754..16698776 | 17..39 | 100 | -> | Plus |
arm_3R | 16698840..16699215 | 40..414 | 98 | | Plus |
BS17056.complete Sequence
422 bp assembled on 2007-05-08
GenBank Submission: FJ638237
> BS17056.complete
GAAGTTATCAGTCGACATGAATGCCTCCATTTCTCTACTATGCCTTGCCC
TGCTCCTGATTAGTCCTTTTTGCTTGGGCTATTCTGACGAGGAAAGGGAA
TCTGACAGCCTTAGGGTTGCAGAAATTATTCGAACCTCCAACGACGCCGA
ATCGAAGATCAATCGAACCCAAGAGCTGCTCGATATCTTTAGGCGCCTGA
CTCCCACGTTGTCCCCTGAACAAAGGGAAAAGATTGAAAGATCCATTCAG
GAGCATACTGATGAAATTCTAATCGATGGAGTTCCGAGTCAGGGGGGGCG
AAAGACCAAGTACGTCGGAAAAATCCTATCTCCAGTGGCACAAGGCCTTG
CAGTTGGATTCTTTGAAGAACTCGGTGGCAGCCTTTCCAGGCTCTTTACT
GGATAAAAGCTTTCTAGACCAT
BS17056.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:46:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotC-RA | 390 | CG31508-PA | 1..390 | 17..406 | 1950 | 100 | Plus |
TotA-RA | 390 | CG31509-PA | 25..354 | 41..370 | 390 | 74.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:46:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotC-RA | 530 | CG31508-RA | 45..434 | 17..406 | 1950 | 100 | Plus |
TotA-RA | 579 | CG31509-RA | 66..395 | 41..370 | 390 | 74.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:46:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20873118..20873484 | 40..406 | 1835 | 100 | Plus |
3R | 32079331 | 3R | 20871187..20871516 | 41..370 | 390 | 74.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:46:48 has no hits.
BS17056.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:38:18 Download gff for
BS17056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotC-RA | 1..390 | 17..406 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:22 Download gff for
BS17056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotC-RA | 45..443 | 17..414 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:42 Download gff for
BS17056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotC-RA | 45..432 | 17..404 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:38:18 Download gff for
BS17056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotC-RA | 45..443 | 17..414 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:00 Download gff for
BS17056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotC-RA | 45..432 | 17..404 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:00 Download gff for
BS17056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20873032..20873054 | 17..39 | 100 | -> | Plus |
3R | 20873118..20873482 | 40..404 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:42 Download gff for
BS17056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16698754..16698776 | 17..39 | 100 | -> | Plus |
arm_3R | 16698840..16699204 | 40..404 | 100 | | Plus |
BS17056.pep Sequence
Translation from 16 to 405
> BS17056.pep
MNASISLLCLALLLISPFCLGYSDEERESDSLRVAEIIRTSNDAESKINR
TQELLDIFRRLTPTLSPEQREKIERSIQEHTDEILIDGVPSQGGRKTKYV
GKILSPVAQGLAVGFFEELGGSLSRLFTG*
BS17056.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotC-PA | 129 | CG31508-PA | 1..129 | 1..129 | 640 | 100 | Plus |
TotA-PA | 129 | CG31509-PA | 1..129 | 1..129 | 461 | 65.9 | Plus |
TotB-PA | 138 | CG5609-PA | 1..127 | 1..128 | 336 | 53.1 | Plus |