Clone BS17056 Report

Search the DGRC for BS17056

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:170
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptTotC-RA
Protein status:BS17056.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17056.3prime Sequence

420 bp (420 high quality bases) assembled on 2007-05-15

> BS17056.3prime
ATGGTCTAGAAAGCTTTTCTCCAGTAAAGAGCCTGGAAAGGCTGCCACCG
AGTTCTTCAAAGAATCCAACTGCAAGGCCTTGTGCCACTGGAGATAGGAT
TTTTCCGACGTACTTGGTCTTTCGCCCCCCCTGACTCGGAACTCCATCGA
TTAGAATTTCATCAGTATGCTCCTGAATGGATCTTTCAATCTTTTCCCTT
TGTTCAGGGGACAACGTGGGAGTCAGGCGCCTAAAGATATCGAGCAGCTC
TTGGGTTCGATTGATCTTCGATTCGGCGTCGTTGGAGGTTCGAATAATTT
CTGCAACCCTAAGGCTGTCAGATTCCCTTTCCTCGTCAGAATAGCCCAAG
CAAAAAGGACTAATCAGGAGCAGGGCAAGGCATAGTAGAGAAATGGAGGC
ATTCATGTCGACTGATAACT

BS17056.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG31508-PA 390 TotC-RA 1..387 406..20 1935 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
TotC-RA 530 CG31508-RA 45..431 406..20 1935 100 Minus
TotA-RA 579 CG31509-RA 66..395 382..53 390 75.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20873118..20873481 383..20 1820 100 Minus
3R 32079331 3R 20871187..20871516 382..53 390 74.5 Minus
Blast to na_te.dros performed on 2015-02-12 05:30:11 has no hits.

BS17056.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:41 Download gff for BS17056.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31508-PA 1..390 17..406 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:42:56 Download gff for BS17056.3prime
Subject Subject Range Query Range Percent Splice Strand
TotC-RA 45..434 17..406 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:34:39 Download gff for BS17056.3prime
Subject Subject Range Query Range Percent Splice Strand
TotC-RA 45..434 17..406 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:34:39 Download gff for BS17056.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20873032..20873054 384..406 100 -> Minus
3R 20873118..20873476 25..383 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:42:56 Download gff for BS17056.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16698754..16698776 384..406 100 -> Minus
arm_3R 16698840..16699198 25..383 100 <- Minus

BS17056.5prime Sequence

420 bp (420 high quality bases) assembled on 2007-05-15

> BS17056.5prime
GAAGTTATCAGTCGACATGAATGCCTCCATTTCTCTACTATGCCTTGCCC
TGCTCCTGATTAGTCCTTTTTGCTTGGGCTATTCTGACGAGGAAAGGGAA
TCTGACAGCCTTAGGGTTGCAGAAATTATTCGAACCTCCAACGACGCCGA
ATCGAAGATCAATCGAACCCAAGAGCTGCTCGATATCTTTAGGCGCCTGA
CTCCCACGTTGTCCCCTGAACAAAGGGAAAAGATTGAAAGATCCATTCAG
GAGCATACTGATGAAATTCTAATCGATGGAGTTCCGAGTCAGGGGGGGCG
AAAGACCAAGTACGTCGGAAAAATCCTATCTCCAGTGGCACAAGGCCTTG
CAGTTGGATTCTTTGAAGAACTCGGTGGCAGCCTTTCCAGGCTCTTTACT
GGATAAAAGCTTTCTAGACC

BS17056.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG31508-PA 390 TotC-RA 1..390 17..406 1950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
TotC-RA 530 CG31508-RA 45..434 17..406 1950 100 Plus
TotA-RA 579 CG31509-RA 66..395 41..370 390 75.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20873118..20873484 40..406 1835 100 Plus
3R 32079331 3R 20871187..20871516 41..370 390 74.5 Plus
Blast to na_te.dros performed on 2015-02-13 13:22:50 has no hits.

BS17056.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:54:02 Download gff for BS17056.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31508-PA 1..390 17..406 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:41:29 Download gff for BS17056.5prime
Subject Subject Range Query Range Percent Splice Strand
TotC-RA 45..443 17..414 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:50:40 Download gff for BS17056.5prime
Subject Subject Range Query Range Percent Splice Strand
TotC-RA 45..443 17..414 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:50:40 Download gff for BS17056.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20873032..20873054 17..39 100 -> Plus
3R 20873118..20873493 40..414 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:41:29 Download gff for BS17056.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16698754..16698776 17..39 100 -> Plus
arm_3R 16698840..16699215 40..414 98   Plus

BS17056.complete Sequence

422 bp assembled on 2007-05-08

GenBank Submission: FJ638237

> BS17056.complete
GAAGTTATCAGTCGACATGAATGCCTCCATTTCTCTACTATGCCTTGCCC
TGCTCCTGATTAGTCCTTTTTGCTTGGGCTATTCTGACGAGGAAAGGGAA
TCTGACAGCCTTAGGGTTGCAGAAATTATTCGAACCTCCAACGACGCCGA
ATCGAAGATCAATCGAACCCAAGAGCTGCTCGATATCTTTAGGCGCCTGA
CTCCCACGTTGTCCCCTGAACAAAGGGAAAAGATTGAAAGATCCATTCAG
GAGCATACTGATGAAATTCTAATCGATGGAGTTCCGAGTCAGGGGGGGCG
AAAGACCAAGTACGTCGGAAAAATCCTATCTCCAGTGGCACAAGGCCTTG
CAGTTGGATTCTTTGAAGAACTCGGTGGCAGCCTTTCCAGGCTCTTTACT
GGATAAAAGCTTTCTAGACCAT

BS17056.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
TotC-RA 390 CG31508-PA 1..390 17..406 1950 100 Plus
TotA-RA 390 CG31509-PA 25..354 41..370 390 74.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
TotC-RA 530 CG31508-RA 45..434 17..406 1950 100 Plus
TotA-RA 579 CG31509-RA 66..395 41..370 390 74.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20873118..20873484 40..406 1835 100 Plus
3R 32079331 3R 20871187..20871516 41..370 390 74.5 Plus
Blast to na_te.dros performed on 2014-11-27 23:46:48 has no hits.

BS17056.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:38:18 Download gff for BS17056.complete
Subject Subject Range Query Range Percent Splice Strand
TotC-RA 1..390 17..406 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:22 Download gff for BS17056.complete
Subject Subject Range Query Range Percent Splice Strand
TotC-RA 45..443 17..414 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:42 Download gff for BS17056.complete
Subject Subject Range Query Range Percent Splice Strand
TotC-RA 45..432 17..404 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:38:18 Download gff for BS17056.complete
Subject Subject Range Query Range Percent Splice Strand
TotC-RA 45..443 17..414 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:00 Download gff for BS17056.complete
Subject Subject Range Query Range Percent Splice Strand
TotC-RA 45..432 17..404 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:00 Download gff for BS17056.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20873032..20873054 17..39 100 -> Plus
3R 20873118..20873482 40..404 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:42 Download gff for BS17056.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16698754..16698776 17..39 100 -> Plus
arm_3R 16698840..16699204 40..404 100   Plus

BS17056.pep Sequence

Translation from 16 to 405

> BS17056.pep
MNASISLLCLALLLISPFCLGYSDEERESDSLRVAEIIRTSNDAESKINR
TQELLDIFRRLTPTLSPEQREKIERSIQEHTDEILIDGVPSQGGRKTKYV
GKILSPVAQGLAVGFFEELGGSLSRLFTG*

BS17056.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
TotC-PA 129 CG31508-PA 1..129 1..129 640 100 Plus
TotA-PA 129 CG31509-PA 1..129 1..129 461 65.9 Plus
TotB-PA 138 CG5609-PA 1..127 1..128 336 53.1 Plus