Clone BS17058 Report

Search the DGRC for BS17058

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:170
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS14-RA
Protein status:BS17058.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17058.3prime Sequence

417 bp (417 high quality bases) assembled on 2007-05-15

> BS17058.3prime
ATGGTCTAGAAAGCTTCTACCACATGGCGCGCTGGACGCCGGACAGCTTA
TTGTAGTCGGCGAGGTGGCGCCACACGATTCGACTGAGCCTGTACTTGTG
GACAACTCCGCGCGGACGTGACGTAAGCGCGCAGCGTTCCCTCACCCGGA
CGAGCGATGAGTCCCGAGGAAAAGCAGCGATCTCGGCGTCGGCTACCTCG
CGTAGCTCCGGCGGCAGGATGTCGTTCTTGCGCAGCGAGTTGACTCGCAG
CCGCTCCACGGCGTTCTCCTTGACGCACTTGCGCCGCTTTACGTCGCGAA
TCATCTTCCAATCGGCATACTTTGTGCGCACCTGCTGCAGCCCGCAGCCG
GCTATTTGCACGGACTGGCACACAAAACCCCCGATCCTGGCCAGAGAATT
CATGTCGACTGATAACT

BS17058.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG32531-PA 387 mRpS14-RA 1..387 403..17 1935 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS14-RB 797 CG32531-RB 361..749 405..17 1945 100 Minus
mRpS14-RA 476 CG32531-RA 40..428 405..17 1945 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19479430..19479754 17..341 1625 100 Plus
X 23542271 X 19479814..19479878 341..405 325 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:47:57 has no hits.

BS17058.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:59:41 Download gff for BS17058.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32531-PA 1..387 17..403 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:30:56 Download gff for BS17058.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS14-RA 35..436 8..411 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:55:06 Download gff for BS17058.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS14-RA 35..436 8..411 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:55:06 Download gff for BS17058.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19479422..19479753 8..340 99 <- Plus
X 19479814..19479883 341..411 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:30:56 Download gff for BS17058.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19373455..19373786 8..340 99 <- Plus
arm_X 19373847..19373916 341..411 95   Plus

BS17058.5prime Sequence

417 bp (417 high quality bases) assembled on 2007-05-15

> BS17058.5prime
GAAGTTATCAGTCGACATGAATTCTCTGGCCAGGATCGGGGGTTTTGTGT
GCCAGTCCGTGCAAATAGCCGGCTGCGGGCTGCAGCAGGTGCGCACAAAG
TATGCCGATTGGAAGATGATTCGCGACGTAAAGCGGCGCAAGTGCGTCAA
GGAGAACGCCGTGGAGCGGCTGCGAGTCAACTCGCTGCGCAAGAACGACA
TCCTGCCGCCGGAGCTACGCGAGGTAGCCGACGCCGAGATCGCTGCTTTT
CCTCGGGACTCATCGCTCGTCCGGGTGAGGGAACGCTGCGCGCTTACGTC
ACGTCCGCGCGGAGTTGTCCACAAGTACAGGCTCAGTCGAATCGTGTGGC
GCCACCTCGCCGACTACAATAAGCTGTCCGGCGTCCAGCGCGCCATGTGG
TAGAAGCTTTCTAGACC

BS17058.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG32531-PA 387 mRpS14-RA 1..387 17..403 1935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS14-RB 797 CG32531-RB 361..749 15..403 1945 100 Plus
mRpS14-RA 476 CG32531-RA 40..428 15..403 1945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19479430..19479754 403..79 1625 100 Minus
X 23542271 X 19479814..19479878 79..15 325 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:16:18 has no hits.

BS17058.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:55:45 Download gff for BS17058.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32531-PA 1..387 17..403 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:42:03 Download gff for BS17058.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS14-RA 35..436 9..412 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:23:13 Download gff for BS17058.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS14-RA 35..436 9..412 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:23:13 Download gff for BS17058.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19479422..19479753 80..412 99 <- Minus
X 19479814..19479883 9..79 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:42:03 Download gff for BS17058.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19373455..19373786 80..412 99 <- Minus
arm_X 19373847..19373916 9..79 95   Minus

BS17058.complete Sequence

419 bp assembled on 2007-05-08

GenBank Submission: FJ638238

> BS17058.complete
GAAGTTATCAGTCGACATGAATTCTCTGGCCAGGATCGGGGGTTTTGTGT
GCCAGTCCGTGCAAATAGCCGGCTGCGGGCTGCAGCAGGTGCGCACAAAG
TATGCCGATTGGAAGATGATTCGCGACGTAAAGCGGCGCAAGTGCGTCAA
GGAGAACGCCGTGGAGCGGCTGCGAGTCAACTCGCTGCGCAAGAACGACA
TCCTGCCGCCGGAGCTACGCGAGGTAGCCGACGCCGAGATCGCTGCTTTT
CCTCGGGACTCATCGCTCGTCCGGGTGAGGGAACGCTGCGCGCTTACGTC
ACGTCCGCGCGGAGTTGTCCACAAGTACAGGCTCAGTCGAATCGTGTGGC
GCCACCTCGCCGACTACAATAAGCTGTCCGGCGTCCAGCGCGCCATGTGG
TAGAAGCTTTCTAGACCAT

BS17058.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS14-RB 387 CG32531-PB 1..387 17..403 1935 100 Plus
mRpS14-RA 387 CG32531-PA 1..387 17..403 1935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS14-RB 797 CG32531-RB 361..749 15..403 1945 100 Plus
mRpS14-RA 476 CG32531-RA 40..428 15..403 1945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19479430..19479754 403..79 1625 100 Minus
X 23542271 X 19479814..19479878 79..15 325 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:01:51 has no hits.

BS17058.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:38:25 Download gff for BS17058.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS14-RA 1..387 17..403 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:27 Download gff for BS17058.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS14-RA 1..387 17..403 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:38:33 Download gff for BS17058.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS14-RA 42..428 17..403 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:38:25 Download gff for BS17058.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS14-RA 1..387 17..403 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:20 Download gff for BS17058.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS14-RA 42..428 17..403 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:20 Download gff for BS17058.complete
Subject Subject Range Query Range Percent Splice Strand
X 19479430..19479753 80..403 100 <- Minus
X 19479814..19479876 17..79 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:38:33 Download gff for BS17058.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19373463..19373786 80..403 100 <- Minus
arm_X 19373847..19373909 17..79 100   Minus

BS17058.pep Sequence

Translation from 16 to 402

> BS17058.pep
MNSLARIGGFVCQSVQIAGCGLQQVRTKYADWKMIRDVKRRKCVKENAVE
RLRVNSLRKNDILPPELREVADAEIAAFPRDSSLVRVRERCALTSRPRGV
VHKYRLSRIVWRHLADYNKLSGVQRAMW*

BS17058.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS14-PB 128 CG32531-PB 1..128 1..128 663 100 Plus
mRpS14-PA 128 CG32531-PA 1..128 1..128 663 100 Plus