Clone BS17061 Report

Search the DGRC for BS17061

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:170
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptGstD7-RA
Protein status:BS17061.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17061.3prime Sequence

705 bp (705 high quality bases) assembled on 2007-05-15

> BS17061.3prime
ATGGTCTAGAAAGCTTTTAGGCCTTTACTTCCTTTTCCTTTGCCGCTTGA
AGGTCCTGCAGGAACTTCTTTCCCTGCTGCAGACTCTCAAGATTTTGCTC
CCATCCAGGAGTTACTTTTGGGGCATTCTTAAGCCACCTCTCCACGTTGG
GGAACTTGCTTAGGTCAAACGAAAACCATTCTACGGTGGATACGGTGGCC
AGGATGACGATATCAGCCACGGTCAGTTGGCTACCGGCCACGAAGTCCTG
ACCCTCCAGGAAGGTGTTGAGGAATCCAAAGGCGGAGTTAACCTTGTCCA
GAGCTTCCTGATCTCCGAATTTGCCAGTGCGGAAGATTAGGAAGAAGTAT
TTGGTCAGGGCGTCGTACAGGGTGCCCATATCGAAGTAAAGCCTCTGGTT
GATCAAAGCCCGCTTCTGGGGATCGTTGGGATAGAGTGGGGAATCGGGTT
TGCCGTACTTCTCCACCAGATAGACGGCGATGGCACGCGACTCCCAGATG
ACAAATCCATTGTCCACCAGCGTGGGAATGGTGTGCTGTGGGTTAATCCT
CACGAACTCTGGCTTCAGTTGGTCACCCTCCATCGTGTTGATCAACTTGG
AGTTCAGCTCCAGACCCAAAGCCTTGGCCACCATCTGGATGGCGCGACTG
GCCGGCGCCATGGGGAAATTGTAGAGATCCAAGTTCGGCATGTCGACTGA
TAACT

BS17061.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4371-PA 675 GstD7-RA 1..675 691..17 3375 100 Minus
CG11512-PA 648 GstD4-RA 145..233 538..450 295 93.2 Minus
CG4181-PA 648 GstD2-RA 183..233 500..450 205 96 Minus
CG12242-PA 651 GstD5-RA 183..233 500..450 180 94.1 Minus
CG4181-PA 648 GstD2-RA 142..179 541..504 165 97.3 Minus
CG10045-PA 630 GstD1-RA 148..182 538..504 150 97.1 Minus
CG10045-PB 630 GstD1-RB 148..182 538..504 150 97.1 Minus
CG12242-PA 651 GstD5-RA 146..179 537..504 145 97 Minus
CG4423-PA 648 GstD6-RA 275..317 405..363 140 93 Minus
CG4421-PA 639 GstD8-RA 247..313 433..367 135 88 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
GstD7-RA 756 CG4371-RA 47..722 691..16 3380 100 Minus
GstD2-RA 734 CG4181-RA 76..521 634..186 705 78.2 Minus
GstD4-RA 725 CG11512-RA 171..579 565..154 565 77.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12378546..12379221 691..16 3380 100 Minus
3R 32079331 3R 12372046..12372491 634..186 665 77.1 Minus
3R 32079331 3R 12375812..12376309 634..134 535 74.3 Minus
3R 32079331 3R 12374270..12374678 565..154 525 75.7 Minus
3R 32079331 3R 12377276..12377752 578..99 505 74.2 Minus
3R 32079331 3R 12380135..12380348 583..367 375 79.3 Minus
3R 32079331 3R 12368254..12368514 365..628 370 76.9 Plus
3R 32079331 3R 12373129..12373385 635..376 290 75 Minus
3R 32079331 3R 12365229..12365398 366..538 200 75.7 Plus
Blast to na_te.dros performed on 2015-02-10 15:56:45 has no hits.

BS17061.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:55 Download gff for BS17061.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4371-PA 1..675 17..691 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:34:59 Download gff for BS17061.3prime
Subject Subject Range Query Range Percent Splice Strand
GstD7-RA 1..691 7..698 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:14 Download gff for BS17061.3prime
Subject Subject Range Query Range Percent Splice Strand
GstD7-RA 33..730 7..705 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:14 Download gff for BS17061.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12378532..12379229 7..705 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:34:59 Download gff for BS17061.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8204254..8204951 7..705 98   Minus

BS17061.5prime Sequence

705 bp (705 high quality bases) assembled on 2007-05-15

> BS17061.5prime
GAAGTTATCAGTCGACATGCCGAACTTGGATCTCTACAATTTCCCCATGG
CGCCGGCCAGTCGCGCCATCCAGATGGTGGCCAAGGCTTTGGGTCTGGAG
CTGAACTCCAAGTTGATCAACACGATGGAGGGTGACCAACTGAAGCCAGA
GTTCGTGAGGATTAACCCACAGCACACCATTCCCACGCTGGTGGACAATG
GATTTGTCATCTGGGAGTCGCGTGCCATCGCCGTCTATCTGGTGGAGAAG
TACGGCAAACCCGATTCCCCACTCTATCCCAACGATCCCCAGAAGCGGGC
TTTGATCAACCAGAGGCTTTACTTCGATATGGGCACCCTGTACGACGCCC
TGACCAAATACTTCTTCCTAATCTTCCGCACTGGCAAATTCGGAGATCAG
GAAGCTCTGGACAAGGTTAACTCCGCCTTTGGATTCCTCAACACCTTCCT
GGAGGGTCAGGACTTCGTGGCCGGTAGCCAACTGACCGTGGCTGATATCG
TCATCCTGGCCACCGTATCCACCGTAGAATGGTTTTCGTTTGACCTAAGC
AAGTTCCCCAACGTGGAGAGGTGGCTTAAGAATGCCCCAAAAGTAACTCC
TGGATGGGAGCAAAATCTTGAGAGTCTGCAGCAGGGAAAGAAGTTCCTGC
AGGACCTTCAAGCGGCAAAGGAAAAGGAAGTAAAGGCCTAAAAGCTTTCT
AGACC

BS17061.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG4371-PA 675 GstD7-RA 1..675 17..691 3375 100 Plus
CG11512-PA 648 GstD4-RA 145..233 170..258 295 93.2 Plus
CG4181-PA 648 GstD2-RA 183..233 208..258 205 96 Plus
CG12242-PA 651 GstD5-RA 183..233 208..258 180 94.1 Plus
CG4181-PA 648 GstD2-RA 142..179 167..204 165 97.3 Plus
CG10045-PA 630 GstD1-RA 148..182 170..204 150 97.1 Plus
CG10045-PB 630 GstD1-RB 148..182 170..204 150 97.1 Plus
CG12242-PA 651 GstD5-RA 146..179 171..204 145 97 Plus
CG4423-PA 648 GstD6-RA 275..317 303..345 140 93 Plus
CG4421-PA 639 GstD8-RA 247..313 275..341 135 88 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
GstD7-RA 756 CG4371-RA 47..722 17..692 3380 100 Plus
GstD2-RA 734 CG4181-RA 76..521 74..522 705 78.2 Plus
GstD4-RA 725 CG11512-RA 171..579 143..554 565 77.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12378546..12379221 17..692 3380 100 Plus
3R 32079331 3R 12372046..12372491 74..522 665 77.1 Plus
3R 32079331 3R 12375812..12376309 74..574 535 74.3 Plus
3R 32079331 3R 12374270..12374678 143..554 525 75.7 Plus
3R 32079331 3R 12377276..12377752 130..609 505 74.2 Plus
3R 32079331 3R 12380135..12380348 125..341 375 79.3 Plus
3R 32079331 3R 12368254..12368514 343..80 370 76.9 Minus
3R 32079331 3R 12373129..12373385 73..332 290 75 Plus
3R 32079331 3R 12365229..12365398 342..170 200 75.7 Minus
Blast to na_te.dros performed on 2015-02-04 21:13:03 has no hits.

BS17061.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:54:15 Download gff for BS17061.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4371-PA 1..675 17..691 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:30:30 Download gff for BS17061.5prime
Subject Subject Range Query Range Percent Splice Strand
GstD7-RA 1..691 10..701 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:55:56 Download gff for BS17061.5prime
Subject Subject Range Query Range Percent Splice Strand
GstD7-RA 31..730 1..701 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:56 Download gff for BS17061.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12378530..12379229 1..701 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:30:30 Download gff for BS17061.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8204252..8204951 1..701 98   Plus

BS17061.complete Sequence

707 bp assembled on 2007-05-08

GenBank Submission: FJ638239

> BS17061.complete
GAAGTTATCAGTCGACATGCCGAACTTGGATCTCTACAATTTCCCCATGG
CGCCGGCCAGTCGCGCCATCCAGATGGTGGCCAAGGCTTTGGGTCTGGAG
CTGAACTCCAAGTTGATCAACACGATGGAGGGTGACCAACTGAAGCCAGA
GTTCGTGAGGATTAACCCACAGCACACCATTCCCACGCTGGTGGACAATG
GATTTGTCATCTGGGAGTCGCGTGCCATCGCCGTCTATCTGGTGGAGAAG
TACGGCAAACCCGATTCCCCACTCTATCCCAACGATCCCCAGAAGCGGGC
TTTGATCAACCAGAGGCTTTACTTCGATATGGGCACCCTGTACGACGCCC
TGACCAAATACTTCTTCCTAATCTTCCGCACTGGCAAATTCGGAGATCAG
GAAGCTCTGGACAAGGTTAACTCCGCCTTTGGATTCCTCAACACCTTCCT
GGAGGGTCAGGACTTCGTGGCCGGTAGCCAACTGACCGTGGCTGATATCG
TCATCCTGGCCACCGTATCCACCGTAGAATGGTTTTCGTTTGACCTAAGC
AAGTTCCCCAACGTGGAGAGGTGGCTTAAGAATGCCCCAAAAGTAACTCC
TGGATGGGAGCAAAATCTTGAGAGTCTGCAGCAGGGAAAGAAGTTCCTGC
AGGACCTTCAAGCGGCAAAGGAAAAGGAAGTAAAGGCCTAAAAGCTTTCT
AGACCAT

BS17061.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
GstD7-RA 675 CG4371-PA 1..675 17..691 3375 100 Plus
GstD2-RA 648 CG4181-PA 49..494 74..522 665 77.1 Plus
GstD5-RA 651 CG12242-PA 49..546 74..574 535 74.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
GstD7-RA 756 CG4371-RA 47..722 17..692 3380 100 Plus
GstD2-RA 734 CG4181-RA 76..521 74..522 665 77.1 Plus
GstD5-RA 840 CG12242-RA 80..577 74..574 535 74.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12378546..12379221 17..692 3380 100 Plus
3R 32079331 3R 12372046..12372491 74..522 665 77.1 Plus
3R 32079331 3R 12375812..12376309 74..574 535 74.3 Plus
3R 32079331 3R 12374270..12374678 143..554 525 75.7 Plus
3R 32079331 3R 12377276..12377752 130..609 505 74.2 Plus
3R 32079331 3R 12380135..12380348 125..341 375 79.3 Plus
3R 32079331 3R 12368254..12368514 343..80 370 76.9 Minus
3R 32079331 3R 12373129..12373385 73..332 290 75 Plus
3R 32079331 3R 12365229..12365398 342..170 200 75.7 Minus
Blast to na_te.dros performed on 2014-11-27 16:38:50 has no hits.

BS17061.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:33 Download gff for BS17061.complete
Subject Subject Range Query Range Percent Splice Strand
GstD7-RA 1..675 17..691 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:25 Download gff for BS17061.complete
Subject Subject Range Query Range Percent Splice Strand
GstD7-RA 1..675 17..691 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:39 Download gff for BS17061.complete
Subject Subject Range Query Range Percent Splice Strand
GstD7-RA 8..680 17..689 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:33 Download gff for BS17061.complete
Subject Subject Range Query Range Percent Splice Strand
GstD7-RA 1..675 17..691 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:26 Download gff for BS17061.complete
Subject Subject Range Query Range Percent Splice Strand
GstD7-RA 47..719 17..689 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:26 Download gff for BS17061.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12378546..12379218 17..689 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:39 Download gff for BS17061.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8204268..8204940 17..689 100   Plus

BS17061.pep Sequence

Translation from 16 to 690

> BS17061.pep
MPNLDLYNFPMAPASRAIQMVAKALGLELNSKLINTMEGDQLKPEFVRIN
PQHTIPTLVDNGFVIWESRAIAVYLVEKYGKPDSPLYPNDPQKRALINQR
LYFDMGTLYDALTKYFFLIFRTGKFGDQEALDKVNSAFGFLNTFLEGQDF
VAGSQLTVADIVILATVSTVEWFSFDLSKFPNVERWLKNAPKVTPGWEQN
LESLQQGKKFLQDLQAAKEKEVKA*

BS17061.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
GstD7-PA 224 CG4371-PA 1..224 1..224 1162 100 Plus
GstD6-PA 215 CG4423-PA 1..209 4..213 760 68.6 Plus
GstD2-PA 215 CG4181-PA 1..204 4..208 729 68.3 Plus
GstD4-PA 215 CG11512-PA 1..213 4..217 714 64.5 Plus
GstD5-PA 216 CG12242-PA 1..216 4..220 711 62.7 Plus