Clone Sequence Records
BS17061.3prime Sequence
705 bp (705 high quality bases) assembled on 2007-05-15
> BS17061.3prime
ATGGTCTAGAAAGCTTTTAGGCCTTTACTTCCTTTTCCTTTGCCGCTTGA
AGGTCCTGCAGGAACTTCTTTCCCTGCTGCAGACTCTCAAGATTTTGCTC
CCATCCAGGAGTTACTTTTGGGGCATTCTTAAGCCACCTCTCCACGTTGG
GGAACTTGCTTAGGTCAAACGAAAACCATTCTACGGTGGATACGGTGGCC
AGGATGACGATATCAGCCACGGTCAGTTGGCTACCGGCCACGAAGTCCTG
ACCCTCCAGGAAGGTGTTGAGGAATCCAAAGGCGGAGTTAACCTTGTCCA
GAGCTTCCTGATCTCCGAATTTGCCAGTGCGGAAGATTAGGAAGAAGTAT
TTGGTCAGGGCGTCGTACAGGGTGCCCATATCGAAGTAAAGCCTCTGGTT
GATCAAAGCCCGCTTCTGGGGATCGTTGGGATAGAGTGGGGAATCGGGTT
TGCCGTACTTCTCCACCAGATAGACGGCGATGGCACGCGACTCCCAGATG
ACAAATCCATTGTCCACCAGCGTGGGAATGGTGTGCTGTGGGTTAATCCT
CACGAACTCTGGCTTCAGTTGGTCACCCTCCATCGTGTTGATCAACTTGG
AGTTCAGCTCCAGACCCAAAGCCTTGGCCACCATCTGGATGGCGCGACTG
GCCGGCGCCATGGGGAAATTGTAGAGATCCAAGTTCGGCATGTCGACTGA
TAACT
BS17061.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4371-PA | 675 | GstD7-RA | 1..675 | 691..17 | 3375 | 100 | Minus |
CG11512-PA | 648 | GstD4-RA | 145..233 | 538..450 | 295 | 93.2 | Minus |
CG4181-PA | 648 | GstD2-RA | 183..233 | 500..450 | 205 | 96 | Minus |
CG12242-PA | 651 | GstD5-RA | 183..233 | 500..450 | 180 | 94.1 | Minus |
CG4181-PA | 648 | GstD2-RA | 142..179 | 541..504 | 165 | 97.3 | Minus |
CG10045-PA | 630 | GstD1-RA | 148..182 | 538..504 | 150 | 97.1 | Minus |
CG10045-PB | 630 | GstD1-RB | 148..182 | 538..504 | 150 | 97.1 | Minus |
CG12242-PA | 651 | GstD5-RA | 146..179 | 537..504 | 145 | 97 | Minus |
CG4423-PA | 648 | GstD6-RA | 275..317 | 405..363 | 140 | 93 | Minus |
CG4421-PA | 639 | GstD8-RA | 247..313 | 433..367 | 135 | 88 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:56:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD7-RA | 756 | CG4371-RA | 47..722 | 691..16 | 3380 | 100 | Minus |
GstD2-RA | 734 | CG4181-RA | 76..521 | 634..186 | 705 | 78.2 | Minus |
GstD4-RA | 725 | CG11512-RA | 171..579 | 565..154 | 565 | 77.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:56:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12378546..12379221 | 691..16 | 3380 | 100 | Minus |
3R | 32079331 | 3R | 12372046..12372491 | 634..186 | 665 | 77.1 | Minus |
3R | 32079331 | 3R | 12375812..12376309 | 634..134 | 535 | 74.3 | Minus |
3R | 32079331 | 3R | 12374270..12374678 | 565..154 | 525 | 75.7 | Minus |
3R | 32079331 | 3R | 12377276..12377752 | 578..99 | 505 | 74.2 | Minus |
3R | 32079331 | 3R | 12380135..12380348 | 583..367 | 375 | 79.3 | Minus |
3R | 32079331 | 3R | 12368254..12368514 | 365..628 | 370 | 76.9 | Plus |
3R | 32079331 | 3R | 12373129..12373385 | 635..376 | 290 | 75 | Minus |
3R | 32079331 | 3R | 12365229..12365398 | 366..538 | 200 | 75.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:56:45 has no hits.
BS17061.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:55 Download gff for
BS17061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4371-PA | 1..675 | 17..691 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:34:59 Download gff for
BS17061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD7-RA | 1..691 | 7..698 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:14 Download gff for
BS17061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD7-RA | 33..730 | 7..705 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:14 Download gff for
BS17061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12378532..12379229 | 7..705 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:34:59 Download gff for
BS17061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8204254..8204951 | 7..705 | 98 | | Minus |
BS17061.5prime Sequence
705 bp (705 high quality bases) assembled on 2007-05-15
> BS17061.5prime
GAAGTTATCAGTCGACATGCCGAACTTGGATCTCTACAATTTCCCCATGG
CGCCGGCCAGTCGCGCCATCCAGATGGTGGCCAAGGCTTTGGGTCTGGAG
CTGAACTCCAAGTTGATCAACACGATGGAGGGTGACCAACTGAAGCCAGA
GTTCGTGAGGATTAACCCACAGCACACCATTCCCACGCTGGTGGACAATG
GATTTGTCATCTGGGAGTCGCGTGCCATCGCCGTCTATCTGGTGGAGAAG
TACGGCAAACCCGATTCCCCACTCTATCCCAACGATCCCCAGAAGCGGGC
TTTGATCAACCAGAGGCTTTACTTCGATATGGGCACCCTGTACGACGCCC
TGACCAAATACTTCTTCCTAATCTTCCGCACTGGCAAATTCGGAGATCAG
GAAGCTCTGGACAAGGTTAACTCCGCCTTTGGATTCCTCAACACCTTCCT
GGAGGGTCAGGACTTCGTGGCCGGTAGCCAACTGACCGTGGCTGATATCG
TCATCCTGGCCACCGTATCCACCGTAGAATGGTTTTCGTTTGACCTAAGC
AAGTTCCCCAACGTGGAGAGGTGGCTTAAGAATGCCCCAAAAGTAACTCC
TGGATGGGAGCAAAATCTTGAGAGTCTGCAGCAGGGAAAGAAGTTCCTGC
AGGACCTTCAAGCGGCAAAGGAAAAGGAAGTAAAGGCCTAAAAGCTTTCT
AGACC
BS17061.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:54:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4371-PA | 675 | GstD7-RA | 1..675 | 17..691 | 3375 | 100 | Plus |
CG11512-PA | 648 | GstD4-RA | 145..233 | 170..258 | 295 | 93.2 | Plus |
CG4181-PA | 648 | GstD2-RA | 183..233 | 208..258 | 205 | 96 | Plus |
CG12242-PA | 651 | GstD5-RA | 183..233 | 208..258 | 180 | 94.1 | Plus |
CG4181-PA | 648 | GstD2-RA | 142..179 | 167..204 | 165 | 97.3 | Plus |
CG10045-PA | 630 | GstD1-RA | 148..182 | 170..204 | 150 | 97.1 | Plus |
CG10045-PB | 630 | GstD1-RB | 148..182 | 170..204 | 150 | 97.1 | Plus |
CG12242-PA | 651 | GstD5-RA | 146..179 | 171..204 | 145 | 97 | Plus |
CG4423-PA | 648 | GstD6-RA | 275..317 | 303..345 | 140 | 93 | Plus |
CG4421-PA | 639 | GstD8-RA | 247..313 | 275..341 | 135 | 88 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:13:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD7-RA | 756 | CG4371-RA | 47..722 | 17..692 | 3380 | 100 | Plus |
GstD2-RA | 734 | CG4181-RA | 76..521 | 74..522 | 705 | 78.2 | Plus |
GstD4-RA | 725 | CG11512-RA | 171..579 | 143..554 | 565 | 77.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:12:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12378546..12379221 | 17..692 | 3380 | 100 | Plus |
3R | 32079331 | 3R | 12372046..12372491 | 74..522 | 665 | 77.1 | Plus |
3R | 32079331 | 3R | 12375812..12376309 | 74..574 | 535 | 74.3 | Plus |
3R | 32079331 | 3R | 12374270..12374678 | 143..554 | 525 | 75.7 | Plus |
3R | 32079331 | 3R | 12377276..12377752 | 130..609 | 505 | 74.2 | Plus |
3R | 32079331 | 3R | 12380135..12380348 | 125..341 | 375 | 79.3 | Plus |
3R | 32079331 | 3R | 12368254..12368514 | 343..80 | 370 | 76.9 | Minus |
3R | 32079331 | 3R | 12373129..12373385 | 73..332 | 290 | 75 | Plus |
3R | 32079331 | 3R | 12365229..12365398 | 342..170 | 200 | 75.7 | Minus |
Blast to na_te.dros performed on 2015-02-04 21:13:03 has no hits.
BS17061.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:54:15 Download gff for
BS17061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4371-PA | 1..675 | 17..691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:30:30 Download gff for
BS17061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD7-RA | 1..691 | 10..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:55:56 Download gff for
BS17061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD7-RA | 31..730 | 1..701 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:56 Download gff for
BS17061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12378530..12379229 | 1..701 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:30:30 Download gff for
BS17061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8204252..8204951 | 1..701 | 98 | | Plus |
BS17061.complete Sequence
707 bp assembled on 2007-05-08
GenBank Submission: FJ638239
> BS17061.complete
GAAGTTATCAGTCGACATGCCGAACTTGGATCTCTACAATTTCCCCATGG
CGCCGGCCAGTCGCGCCATCCAGATGGTGGCCAAGGCTTTGGGTCTGGAG
CTGAACTCCAAGTTGATCAACACGATGGAGGGTGACCAACTGAAGCCAGA
GTTCGTGAGGATTAACCCACAGCACACCATTCCCACGCTGGTGGACAATG
GATTTGTCATCTGGGAGTCGCGTGCCATCGCCGTCTATCTGGTGGAGAAG
TACGGCAAACCCGATTCCCCACTCTATCCCAACGATCCCCAGAAGCGGGC
TTTGATCAACCAGAGGCTTTACTTCGATATGGGCACCCTGTACGACGCCC
TGACCAAATACTTCTTCCTAATCTTCCGCACTGGCAAATTCGGAGATCAG
GAAGCTCTGGACAAGGTTAACTCCGCCTTTGGATTCCTCAACACCTTCCT
GGAGGGTCAGGACTTCGTGGCCGGTAGCCAACTGACCGTGGCTGATATCG
TCATCCTGGCCACCGTATCCACCGTAGAATGGTTTTCGTTTGACCTAAGC
AAGTTCCCCAACGTGGAGAGGTGGCTTAAGAATGCCCCAAAAGTAACTCC
TGGATGGGAGCAAAATCTTGAGAGTCTGCAGCAGGGAAAGAAGTTCCTGC
AGGACCTTCAAGCGGCAAAGGAAAAGGAAGTAAAGGCCTAAAAGCTTTCT
AGACCAT
BS17061.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:38:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD7-RA | 675 | CG4371-PA | 1..675 | 17..691 | 3375 | 100 | Plus |
GstD2-RA | 648 | CG4181-PA | 49..494 | 74..522 | 665 | 77.1 | Plus |
GstD5-RA | 651 | CG12242-PA | 49..546 | 74..574 | 535 | 74.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:38:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD7-RA | 756 | CG4371-RA | 47..722 | 17..692 | 3380 | 100 | Plus |
GstD2-RA | 734 | CG4181-RA | 76..521 | 74..522 | 665 | 77.1 | Plus |
GstD5-RA | 840 | CG12242-RA | 80..577 | 74..574 | 535 | 74.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:38:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12378546..12379221 | 17..692 | 3380 | 100 | Plus |
3R | 32079331 | 3R | 12372046..12372491 | 74..522 | 665 | 77.1 | Plus |
3R | 32079331 | 3R | 12375812..12376309 | 74..574 | 535 | 74.3 | Plus |
3R | 32079331 | 3R | 12374270..12374678 | 143..554 | 525 | 75.7 | Plus |
3R | 32079331 | 3R | 12377276..12377752 | 130..609 | 505 | 74.2 | Plus |
3R | 32079331 | 3R | 12380135..12380348 | 125..341 | 375 | 79.3 | Plus |
3R | 32079331 | 3R | 12368254..12368514 | 343..80 | 370 | 76.9 | Minus |
3R | 32079331 | 3R | 12373129..12373385 | 73..332 | 290 | 75 | Plus |
3R | 32079331 | 3R | 12365229..12365398 | 342..170 | 200 | 75.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:38:50 has no hits.
BS17061.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:33 Download gff for
BS17061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD7-RA | 1..675 | 17..691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:25 Download gff for
BS17061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD7-RA | 1..675 | 17..691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:39 Download gff for
BS17061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD7-RA | 8..680 | 17..689 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:33 Download gff for
BS17061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD7-RA | 1..675 | 17..691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:26 Download gff for
BS17061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD7-RA | 47..719 | 17..689 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:26 Download gff for
BS17061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12378546..12379218 | 17..689 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:39 Download gff for
BS17061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8204268..8204940 | 17..689 | 100 | | Plus |
BS17061.pep Sequence
Translation from 16 to 690
> BS17061.pep
MPNLDLYNFPMAPASRAIQMVAKALGLELNSKLINTMEGDQLKPEFVRIN
PQHTIPTLVDNGFVIWESRAIAVYLVEKYGKPDSPLYPNDPQKRALINQR
LYFDMGTLYDALTKYFFLIFRTGKFGDQEALDKVNSAFGFLNTFLEGQDF
VAGSQLTVADIVILATVSTVEWFSFDLSKFPNVERWLKNAPKVTPGWEQN
LESLQQGKKFLQDLQAAKEKEVKA*
BS17061.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD7-PA | 224 | CG4371-PA | 1..224 | 1..224 | 1162 | 100 | Plus |
GstD6-PA | 215 | CG4423-PA | 1..209 | 4..213 | 760 | 68.6 | Plus |
GstD2-PA | 215 | CG4181-PA | 1..204 | 4..208 | 729 | 68.3 | Plus |
GstD4-PA | 215 | CG11512-PA | 1..213 | 4..217 | 714 | 64.5 | Plus |
GstD5-PA | 216 | CG12242-PA | 1..216 | 4..220 | 711 | 62.7 | Plus |