Clone Sequence Records
BS17063.5prime Sequence
462 bp (462 high quality bases) assembled on 2007-05-15
> BS17063.5prime
GAAGTTATCAGTCGACATGCAGTCTACTCCAATCATTCTGGTGGCAATCG
TCCTTCTCGGCGCCGCACTGGTGCGAGCCTTTGACGAGAAGGAGGCCCTG
GCCAAGCTGATGGAGTCAGCCGAGAGCTGCATGCCGGAAGTGGGGGCCAC
CGATGCCGATCTGCAGGAAATGGTCAAGAAGCAGCCAGCCAGCACATATG
CCGGCAAGTGCCTGCGCGCCTGCGTGATGAAGAACATCGGAATTCTGGAC
GCCAACGGAAAACTGGACACGGAGGCAGGTCACGAGAAGGCCAAGCAGTA
CACGGGCAACGATCCGGCCAAGCTAAAGATTGCCCTGGAGATCGGCGACA
CCTGTGCCGCCATCACTGTGCCGGATGATCACTGCGAGGCCGCCGAAGCC
TATGGCACTTGCTTCAGGGGCGAGGCCAAGAAACATGGACTCTTGTAAAA
GCTTTCTAGACC
BS17063.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:54:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6641-PA | 432 | Pbprp5-RA | 1..432 | 17..448 | 2160 | 100 | Plus |
| CG1668-PA | 453 | Pbprp2-RA | 198..224 | 205..231 | 135 | 100 | Plus |
| CG1668-PB | 453 | Pbprp2-RB | 198..224 | 205..231 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:09:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp28a-RA | 575 | CG6641-RA | 36..468 | 16..448 | 2165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:09:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7496898..7497330 | 448..16 | 2165 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:09:11 has no hits.
BS17063.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:54:34 Download gff for
BS17063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6641-PA | 1..432 | 17..448 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:29:43 Download gff for
BS17063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp28a-RA | 31..473 | 10..455 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:47:02 Download gff for
BS17063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp28a-RA | 31..473 | 10..455 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:47:02 Download gff for
BS17063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7496893..7497335 | 10..455 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:29:43 Download gff for
BS17063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7496893..7497335 | 10..455 | 98 | | Minus |
BS17063.3prime Sequence
462 bp (462 high quality bases) assembled on 2007-05-15
> BS17063.3prime
ATGGTCTAGAAAGCTTTTACAAGAGTCCATGTTTCTTGGCCTCGCCCCTG
AAGCAAGTGCCATAGGCTTCGGCGGCCTCGCAGTGATCATCCGGCACAGT
GATGGCGGCACAGGTGTCGCCGATCTCCAGGGCAATCTTTAGCTTGGCCG
GATCGTTGCCCGTGTACTGCTTGGCCTTCTCGTGACCTGCCTCCGTGTCC
AGTTTTCCGTTGGCGTCCAGAATTCCGATGTTCTTCATCACGCAGGCGCG
CAGGCACTTGCCGGCATATGTGCTGGCTGGCTGCTTCTTGACCATTTCCT
GCAGATCGGCATCGGTGGCCCCCACTTCCGGCATGCAGCTCTCGGCTGAC
TCCATCAGCTTGGCCAGGGCCTCCTTCTCGTCAAAGGCTCGCACCAGTGC
GGCGCCGAGAAGGACGATTGCCACCAGAATGATTGGAGTAGACTGCATGT
CGACTGATAACT
BS17063.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:58:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6641-PA | 432 | Pbprp5-RA | 1..432 | 448..17 | 2160 | 100 | Minus |
| CG1668-PA | 453 | Pbprp2-RA | 198..224 | 260..234 | 135 | 100 | Minus |
| CG1668-PB | 453 | Pbprp2-RB | 198..224 | 260..234 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:39:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp28a-RA | 575 | CG6641-RA | 36..468 | 449..17 | 2165 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:39:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7496898..7497330 | 17..449 | 2165 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:39:28 has no hits.
BS17063.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:58:14 Download gff for
BS17063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6641-PA | 1..432 | 17..448 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:30:45 Download gff for
BS17063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp28a-RA | 31..473 | 10..455 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:48:48 Download gff for
BS17063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp28a-RA | 31..473 | 10..455 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:48:48 Download gff for
BS17063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7496893..7497335 | 10..455 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:30:45 Download gff for
BS17063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7496893..7497335 | 10..455 | 98 | | Plus |
BS17063.complete Sequence
464 bp assembled on 2007-05-08
GenBank Submission: FJ638240
> BS17063.complete
GAAGTTATCAGTCGACATGCAGTCTACTCCAATCATTCTGGTGGCAATCG
TCCTTCTCGGCGCCGCACTGGTGCGAGCCTTTGACGAGAAGGAGGCCCTG
GCCAAGCTGATGGAGTCAGCCGAGAGCTGCATGCCGGAAGTGGGGGCCAC
CGATGCCGATCTGCAGGAAATGGTCAAGAAGCAGCCAGCCAGCACATATG
CCGGCAAGTGCCTGCGCGCCTGCGTGATGAAGAACATCGGAATTCTGGAC
GCCAACGGAAAACTGGACACGGAGGCAGGTCACGAGAAGGCCAAGCAGTA
CACGGGCAACGATCCGGCCAAGCTAAAGATTGCCCTGGAGATCGGCGACA
CCTGTGCCGCCATCACTGTGCCGGATGATCACTGCGAGGCCGCCGAAGCC
TATGGCACTTGCTTCAGGGGCGAGGCCAAGAAACATGGACTCTTGTAAAA
GCTTTCTAGACCAT
BS17063.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:11:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp28a-RA | 432 | CG6641-PA | 1..432 | 17..448 | 2160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp28a-RA | 575 | CG6641-RA | 36..468 | 16..448 | 2165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7496898..7497330 | 448..16 | 2165 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:11:33 has no hits.
BS17063.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:58 Download gff for
BS17063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbprp5-RA | 1..432 | 17..448 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:46 Download gff for
BS17063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbprp5-RA | 26..468 | 10..455 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:45 Download gff for
BS17063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp28a-RA | 37..466 | 17..446 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:58 Download gff for
BS17063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbprp5-RA | 26..468 | 10..455 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:03 Download gff for
BS17063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp28a-RA | 37..466 | 17..446 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:03 Download gff for
BS17063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7496900..7497329 | 17..446 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:45 Download gff for
BS17063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7496900..7497329 | 17..446 | 100 | | Minus |
BS17063.pep Sequence
Translation from 16 to 447
> BS17063.pep
MQSTPIILVAIVLLGAALVRAFDEKEALAKLMESAESCMPEVGATDADLQ
EMVKKQPASTYAGKCLRACVMKNIGILDANGKLDTEAGHEKAKQYTGNDP
AKLKIALEIGDTCAAITVPDDHCEAAEAYGTCFRGEAKKHGLL*
BS17063.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp28a-PA | 143 | CG6641-PA | 1..143 | 1..143 | 733 | 100 | Plus |
| Obp19d-PB | 150 | CG1668-PB | 8..145 | 4..142 | 244 | 38.3 | Plus |
| Obp19d-PA | 150 | CG1668-PA | 8..145 | 4..142 | 244 | 38.3 | Plus |
