Clone Sequence Records
BS17065.3prime Sequence
363 bp (363 high quality bases) assembled on 2007-05-15
> BS17065.3prime
ATGGTCTAGAAAGCTTTTAATTCTCGATCGCGCGGGTGACTTCTTCGGCC
ACTTCAAGGAGTTTCTTCCATTGAATTAAAGATAGGGAGATGCCCTTCTT
GCCGGGAAGAATTTGGCCGCCCTTATCGTAGAACTCTCGAATGTCCACCG
ATTTGCGACCGCGGAACTCGTTGATTCGCACCTGGCGAAGTCCTTCCAGG
GTCCAAGATGTAGCACCATTTTCGCCCGAATCTTTTGGATCTGAATTTGG
AGCATCAGATTCCTTCGCCTTCTTGCTTGCCGGCTTGATACGATCATCTG
GACCGCTATCGCTATCTGAGGACGAATCCTTCTTCTTTGTTTTGGGCATG
TCGACTGATAACT
BS17065.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:00:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8396-PA | 333 | Ssb-c31a-RA | 1..333 | 349..17 | 1665 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:34:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssb-c31a-RA | 536 | CG8396-RA | 100..432 | 349..17 | 1665 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:34:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8211559..8211834 | 292..17 | 1380 | 100 | Minus |
2L | 23513712 | 2L | 8211446..8211502 | 349..293 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:34:28 has no hits.
BS17065.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:00:14 Download gff for
BS17065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8396-PA | 1..333 | 17..349 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:19:12 Download gff for
BS17065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssb-c31a-RA | 100..432 | 17..349 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:44:20 Download gff for
BS17065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssb-c31a-RA | 100..432 | 17..349 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:44:20 Download gff for
BS17065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8211446..8211502 | 293..349 | 100 | -> | Minus |
2L | 8211559..8211834 | 17..292 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:19:12 Download gff for
BS17065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8211446..8211502 | 293..349 | 100 | -> | Minus |
arm_2L | 8211559..8211834 | 17..292 | 100 | | Minus |
BS17065.5prime Sequence
363 bp (363 high quality bases) assembled on 2007-05-15
> BS17065.5prime
GAAGTTATCAGTCGACATGCCCAAAACAAAGAAGAAGGATTCGTCCTCAG
ATAGCGATAGCGGTCCAGATGATCGTATCAAGCCGGCAAGCAAGAAGGCG
AAGGAATCTGATGCTCCAAATTCAGATCCAAAAGATTCGGGCGAAAATGG
TGCTACATCTTGGACCCTGGAAGGACTTCGCCAGGTGCGAATCAACGAGT
TCCGCGGTCGCAAATCGGTGGACATTCGAGAGTTCTACGATAAGGGCGGC
CAAATTCTTCCCGGCAAGAAGGGCATCTCCCTATCTTTAATTCAATGGAA
GAAACTCCTTGAAGTGGCCGAAGAAGTCACCCGCGCGATCGAGAATTAAA
AGCTTTCTAGACC
BS17065.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:56:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8396-PA | 333 | Ssb-c31a-RA | 1..333 | 17..349 | 1665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:40:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssb-c31a-RA | 536 | CG8396-RA | 100..432 | 17..349 | 1665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:40:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8211559..8211834 | 74..349 | 1380 | 100 | Plus |
2L | 23513712 | 2L | 8211446..8211502 | 17..73 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:40:39 has no hits.
BS17065.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:56:14 Download gff for
BS17065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8396-PA | 1..333 | 17..349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:49:48 Download gff for
BS17065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssb-c31a-RA | 100..432 | 17..349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:14:11 Download gff for
BS17065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssb-c31a-RA | 100..432 | 17..349 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:14:11 Download gff for
BS17065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8211559..8211834 | 74..349 | 100 | | Plus |
2L | 8211446..8211502 | 17..73 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:49:48 Download gff for
BS17065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8211446..8211502 | 17..73 | 100 | -> | Plus |
arm_2L | 8211559..8211834 | 74..349 | 100 | | Plus |
BS17065.complete Sequence
365 bp assembled on 2007-05-08
GenBank Submission: FJ638241
> BS17065.complete
GAAGTTATCAGTCGACATGCCCAAAACAAAGAAGAAGGATTCGTCCTCAG
ATAGCGATAGCGGTCCAGATGATCGTATCAAGCCGGCAAGCAAGAAGGCG
AAGGAATCTGATGCTCCAAATTCAGATCCAAAAGATTCGGGCGAAAATGG
TGCTACATCTTGGACCCTGGAAGGACTTCGCCAGGTGCGAATCAACGAGT
TCCGCGGTCGCAAATCGGTGGACATTCGAGAGTTCTACGATAAGGGCGGC
CAAATTCTTCCCGGCAAGAAGGGCATCTCCCTATCTTTAATTCAATGGAA
GAAACTCCTTGAAGTGGCCGAAGAAGTCACCCGCGCGATCGAGAATTAAA
AGCTTTCTAGACCAT
BS17065.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:23:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssb-c31a-RA | 333 | CG8396-PA | 1..333 | 17..349 | 1665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:23:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssb-c31a-RA | 536 | CG8396-RA | 100..432 | 17..349 | 1665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:23:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8211559..8211834 | 74..349 | 1380 | 100 | Plus |
2L | 23513712 | 2L | 8211446..8211502 | 17..73 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:23:23 has no hits.
BS17065.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:51 Download gff for
BS17065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssb-c31a-RA | 1..333 | 17..349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:53:25 Download gff for
BS17065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssb-c31a-RA | 84..416 | 17..349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:22 Download gff for
BS17065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssb-c31a-RA | 100..430 | 17..347 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:51 Download gff for
BS17065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssb-c31a-RA | 84..416 | 17..349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:22 Download gff for
BS17065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssb-c31a-RA | 100..430 | 17..347 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:22 Download gff for
BS17065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8211446..8211502 | 17..73 | 100 | -> | Plus |
2L | 8211559..8211832 | 74..347 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:22 Download gff for
BS17065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8211446..8211502 | 17..73 | 100 | -> | Plus |
arm_2L | 8211559..8211832 | 74..347 | 100 | | Plus |
BS17065.pep Sequence
Translation from 16 to 348
> BS17065.pep
MPKTKKKDSSSDSDSGPDDRIKPASKKAKESDAPNSDPKDSGENGATSWT
LEGLRQVRINEFRGRKSVDIREFYDKGGQILPGKKGISLSLIQWKKLLEV
AEEVTRAIEN*
BS17065.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssb-c31a-PA | 110 | CG8396-PA | 1..110 | 1..110 | 564 | 100 | Plus |