Clone BS17065 Report

Search the DGRC for BS17065

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:170
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptSsb-c31a-RA
Protein status:BS17065.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17065.3prime Sequence

363 bp (363 high quality bases) assembled on 2007-05-15

> BS17065.3prime
ATGGTCTAGAAAGCTTTTAATTCTCGATCGCGCGGGTGACTTCTTCGGCC
ACTTCAAGGAGTTTCTTCCATTGAATTAAAGATAGGGAGATGCCCTTCTT
GCCGGGAAGAATTTGGCCGCCCTTATCGTAGAACTCTCGAATGTCCACCG
ATTTGCGACCGCGGAACTCGTTGATTCGCACCTGGCGAAGTCCTTCCAGG
GTCCAAGATGTAGCACCATTTTCGCCCGAATCTTTTGGATCTGAATTTGG
AGCATCAGATTCCTTCGCCTTCTTGCTTGCCGGCTTGATACGATCATCTG
GACCGCTATCGCTATCTGAGGACGAATCCTTCTTCTTTGTTTTGGGCATG
TCGACTGATAACT

BS17065.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG8396-PA 333 Ssb-c31a-RA 1..333 349..17 1665 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
Ssb-c31a-RA 536 CG8396-RA 100..432 349..17 1665 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8211559..8211834 292..17 1380 100 Minus
2L 23513712 2L 8211446..8211502 349..293 285 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:34:28 has no hits.

BS17065.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:00:14 Download gff for BS17065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8396-PA 1..333 17..349 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:19:12 Download gff for BS17065.3prime
Subject Subject Range Query Range Percent Splice Strand
Ssb-c31a-RA 100..432 17..349 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:44:20 Download gff for BS17065.3prime
Subject Subject Range Query Range Percent Splice Strand
Ssb-c31a-RA 100..432 17..349 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:44:20 Download gff for BS17065.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8211446..8211502 293..349 100 -> Minus
2L 8211559..8211834 17..292 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:19:12 Download gff for BS17065.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8211446..8211502 293..349 100 -> Minus
arm_2L 8211559..8211834 17..292 100   Minus

BS17065.5prime Sequence

363 bp (363 high quality bases) assembled on 2007-05-15

> BS17065.5prime
GAAGTTATCAGTCGACATGCCCAAAACAAAGAAGAAGGATTCGTCCTCAG
ATAGCGATAGCGGTCCAGATGATCGTATCAAGCCGGCAAGCAAGAAGGCG
AAGGAATCTGATGCTCCAAATTCAGATCCAAAAGATTCGGGCGAAAATGG
TGCTACATCTTGGACCCTGGAAGGACTTCGCCAGGTGCGAATCAACGAGT
TCCGCGGTCGCAAATCGGTGGACATTCGAGAGTTCTACGATAAGGGCGGC
CAAATTCTTCCCGGCAAGAAGGGCATCTCCCTATCTTTAATTCAATGGAA
GAAACTCCTTGAAGTGGCCGAAGAAGTCACCCGCGCGATCGAGAATTAAA
AGCTTTCTAGACC

BS17065.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG8396-PA 333 Ssb-c31a-RA 1..333 17..349 1665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
Ssb-c31a-RA 536 CG8396-RA 100..432 17..349 1665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8211559..8211834 74..349 1380 100 Plus
2L 23513712 2L 8211446..8211502 17..73 285 100 Plus
Blast to na_te.dros performed on 2015-02-12 23:40:39 has no hits.

BS17065.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:56:14 Download gff for BS17065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8396-PA 1..333 17..349 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:49:48 Download gff for BS17065.5prime
Subject Subject Range Query Range Percent Splice Strand
Ssb-c31a-RA 100..432 17..349 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:14:11 Download gff for BS17065.5prime
Subject Subject Range Query Range Percent Splice Strand
Ssb-c31a-RA 100..432 17..349 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:14:11 Download gff for BS17065.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8211559..8211834 74..349 100   Plus
2L 8211446..8211502 17..73 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:49:48 Download gff for BS17065.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8211446..8211502 17..73 100 -> Plus
arm_2L 8211559..8211834 74..349 100   Plus

BS17065.complete Sequence

365 bp assembled on 2007-05-08

GenBank Submission: FJ638241

> BS17065.complete
GAAGTTATCAGTCGACATGCCCAAAACAAAGAAGAAGGATTCGTCCTCAG
ATAGCGATAGCGGTCCAGATGATCGTATCAAGCCGGCAAGCAAGAAGGCG
AAGGAATCTGATGCTCCAAATTCAGATCCAAAAGATTCGGGCGAAAATGG
TGCTACATCTTGGACCCTGGAAGGACTTCGCCAGGTGCGAATCAACGAGT
TCCGCGGTCGCAAATCGGTGGACATTCGAGAGTTCTACGATAAGGGCGGC
CAAATTCTTCCCGGCAAGAAGGGCATCTCCCTATCTTTAATTCAATGGAA
GAAACTCCTTGAAGTGGCCGAAGAAGTCACCCGCGCGATCGAGAATTAAA
AGCTTTCTAGACCAT

BS17065.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
Ssb-c31a-RA 333 CG8396-PA 1..333 17..349 1665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
Ssb-c31a-RA 536 CG8396-RA 100..432 17..349 1665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8211559..8211834 74..349 1380 100 Plus
2L 23513712 2L 8211446..8211502 17..73 285 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:23:23 has no hits.

BS17065.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:51 Download gff for BS17065.complete
Subject Subject Range Query Range Percent Splice Strand
Ssb-c31a-RA 1..333 17..349 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:53:25 Download gff for BS17065.complete
Subject Subject Range Query Range Percent Splice Strand
Ssb-c31a-RA 84..416 17..349 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:22 Download gff for BS17065.complete
Subject Subject Range Query Range Percent Splice Strand
Ssb-c31a-RA 100..430 17..347 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:51 Download gff for BS17065.complete
Subject Subject Range Query Range Percent Splice Strand
Ssb-c31a-RA 84..416 17..349 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:22 Download gff for BS17065.complete
Subject Subject Range Query Range Percent Splice Strand
Ssb-c31a-RA 100..430 17..347 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:22 Download gff for BS17065.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8211446..8211502 17..73 100 -> Plus
2L 8211559..8211832 74..347 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:22 Download gff for BS17065.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8211446..8211502 17..73 100 -> Plus
arm_2L 8211559..8211832 74..347 100   Plus

BS17065.pep Sequence

Translation from 16 to 348

> BS17065.pep
MPKTKKKDSSSDSDSGPDDRIKPASKKAKESDAPNSDPKDSGENGATSWT
LEGLRQVRINEFRGRKSVDIREFYDKGGQILPGKKGISLSLIQWKKLLEV
AEEVTRAIEN*

BS17065.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
Ssb-c31a-PA 110 CG8396-PA 1..110 1..110 564 100 Plus