Clone BS17066 Report

Search the DGRC for BS17066

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:170
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptLip3-RA
Protein status:BS17066.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17066.3prime Sequence

813 bp (812 high quality bases) assembled on 2007-05-15

> BS17066.3prime
ATGGTCTAGAAAGCTTCTATTCGTAGGATTGCATCTGCTTCAAGACCTCG
TCGTAGACGTATTTTCTGGCCTCAGTGCCCCAAATGAAATCCAGATGGGC
CCACTTCTCGAACGGCACCAGGTAGTCCAGCGCCATGTTGGGCAGTTCGT
CTCTCAACTTGCGGACATCGCTCACATCGCACATCCAGTCATTGGCTCCG
TAGTACAATAGAACCGGGGCCTTGGCATTCTTTAGCTTGTAATCCGGAGG
GAAGTAGCTGCCGTACTCATAGGGATTACGGAGAGCGGTGTAGTCGAATT
TACGGAACTTTCCAGAGTTATATTCCTGACAAAAGTGCAAGTTCTGGTTC
ACCGATGCGCCAGCCGGAGACGTGGCCTTGATGTGCTCAAGGAGTTCGTA
GTCCAGCTGTTCGGTATCATAGCCTCCAATCAGGAAGATCTCGTTGGCGC
ACATGTCGGCATAAGGAGAAGTGGCCTGGCACATCTCTATGCCCAAATCC
TGCTTGAACTTATTGCTGGGCATGAACTCCATGGATCCGCAGACCTCCAC
GATGGCATTGGGCTGGCCCAAAATGGGTGCAAAGGCGCGGGTCAAGGGGC
TCTTCATGTTGCCCATATAGGCGGCTGGTCCCAGAAGATGGGCGGACTTG
ATCTTGTCATTGTACTCGGGTCTCTCCGACACCATCACCAGATAGACAGT
GGTACCCTGGGAGTGGCCCACATATTGCACCTGCTGCTGTCCAGTCTTTG
CCAAGACATAATCAATCATCGCCGGAACGTCGTACATGCCGATCTCGTTC
CAGCTGAAGTTCC

BS17066.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8823-PA 1185 Lip3-RA 389..1185 813..17 3985 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
Lip3-RA 1434 CG8823-RA 547..1344 813..16 3990 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13370788..13371204 397..813 2085 100 Plus
3R 32079331 3R 13370330..13370711 16..397 1910 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:59:38 has no hits.

BS17066.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:00:23 Download gff for BS17066.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8823-PA 389..1185 17..813 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:35:32 Download gff for BS17066.3prime
Subject Subject Range Query Range Percent Splice Strand
Lip3-RA 547..1347 10..813 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:41 Download gff for BS17066.3prime
Subject Subject Range Query Range Percent Splice Strand
Lip3-RA 547..1347 10..813 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:41 Download gff for BS17066.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13370327..13370711 10..397 99 <- Plus
3R 13370789..13371204 398..813 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:35:32 Download gff for BS17066.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9196049..9196433 10..397 99 <- Plus
arm_3R 9196511..9196926 398..813 100   Plus

BS17066.5prime Sequence

886 bp (870 high quality bases) assembled on 2007-05-15

> BS17066.5prime
GAAGTTATCAGTCGACATGACAAGAGGAGCGTTAAAAGTGACCATTTTAC
TGGTCGGATTGGGCCTGGTTTTGGCCGGATCTCGGCCTATTTCTGATTGC
GGTGAGCGCATTGAAGACGATGGCTACCCGATGGAGCGCCACGAGGTGGT
CACCAGTGACAACTACATCCTGACTATGCACCGCATCCCGTATTCCCCCA
AAACGGGTGAATCTTCCAACCGACCGGTGGCCTTCCTCATGCACGGCATG
CTGAGTTCTTCCTCCGATTGGGTGCTCATGGGTCCAGAGCGATCCCTGGC
CTATATGCTGGCCGATGCCGGCTACGATGTGTGGATGGGCAATGCCCGAG
GCAACACCTACTCCAAGGCGCACAAGTACTGGCCCACTTACTGGCAGATC
TTCTGGAACTTCAGCTGGAACGAGATCGGCATGTACGACGTTCCGGCGAT
GATTGATTATGTCTTGGCAAAGACTGGACAGCAGCAGGTGCAATATGTGG
GCCACTCCCAGGGTACCACTGTCTATCTGGTGATGGTGTCGGAGAGACCC
GAGTACAATGACAAGATCAAGTCCGCCCATCTTCTGGGACCAGCCGCCTA
TATGGGCAACATGAAGAGCCCCTTGACCCGCGCCTTTGCACCCATTTTGG
GCCAGCCCAATGCCATCGTGGAGGTCTGCGGATCCATGGAGTTCATGCCC
AGCAATAAGTTCAAGCAGGATTTGGGCATAGAGATGTGCCAGGCCACTTC
TCCTTATGCCGACATGTGCGCCAACGAGATCTTCCTGATTGGAGGCTATG
ATACCGAACAGCTGGACTACGAACTCCTTGAGCACATCAAGGCCACGTCT
CCGGCTGGCGCATCGGTGAACCAGAACTTGCACTTT

BS17066.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:56:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8823-PA 1185 Lip3-RA 1..870 17..886 4350 100 Plus
CG8093-PA 1197 CG8093-RA 313..359 320..366 185 95.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
Lip3-RA 1434 CG8823-RA 159..1028 17..886 4350 100 Plus
CG8093-RB 1555 CG8093-RB 311..445 232..366 240 78.5 Plus
CG8093-RA 1334 CG8093-RA 311..445 232..366 240 78.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13370788..13371508 821..101 3605 100 Minus
3R 32079331 3R 13371662..13371746 101..17 425 100 Minus
3R 32079331 3R 13370646..13370711 886..821 330 100 Minus
2R 25286936 2R 15215170..15215304 366..232 240 78.5 Minus
3L 28110227 3L 20460995..20461065 293..363 220 87.3 Plus
Blast to na_te.dros performed on 2015-02-12 16:17:38 has no hits.

BS17066.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:56:19 Download gff for BS17066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8823-PA 1..870 17..886 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:18:03 Download gff for BS17066.5prime
Subject Subject Range Query Range Percent Splice Strand
Lip3-RA 157..1028 13..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:59 Download gff for BS17066.5prime
Subject Subject Range Query Range Percent Splice Strand
Lip3-RA 157..1028 13..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:59 Download gff for BS17066.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13370646..13370711 821..886 100 <- Minus
3R 13370789..13371508 101..820 100 <- Minus
3R 13371663..13371748 13..100 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:18:03 Download gff for BS17066.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9196368..9196433 821..886 100 <- Minus
arm_3R 9196511..9197230 101..820 100 <- Minus
arm_3R 9197385..9197470 13..100 97   Minus

BS17066.complete Sequence

1217 bp assembled on 2007-05-08

GenBank Submission: FJ638242

> BS17066.complete
GAAGTTATCAGTCGACATGACAAGAGGAGCGTTAAAAGTGACCATTTTAC
TGGTCGGATTGGGCCTGGTTTTGGCCGGATCTCGGCCTATTTCTGATTGC
GGTGAGCGCATTGAAGACGATGGCTACCCGATGGAGCGCCACGAGGTGGT
CACCAGTGACAACTACATCCTGACTATGCACCGCATCCCGTATTCCCCCA
AAACGGGTGAATCTTCCAACCGACCGGTGGCCTTCCTCATGCACGGCATG
CTGAGTTCTTCCTCCGATTGGGTGCTCATGGGTCCAGAGCGATCCCTGGC
CTATATGCTGGCCGATGCCGGCTACGATGTGTGGATGGGCAATGCCCGAG
GCAACACCTACTCCAAGGCGCACAAGTACTGGCCCACTTACTGGCAGATC
TTCTGGAACTTCAGCTGGAACGAGATCGGCATGTACGACGTTCCGGCGAT
GATTGATTATGTCTTGGCAAAGACTGGACAGCAGCAGGTGCAATATGTGG
GCCACTCCCAGGGTACCACTGTCTATCTGGTGATGGTGTCGGAGAGACCC
GAGTACAATGACAAGATCAAGTCCGCCCATCTTCTGGGACCAGCCGCCTA
TATGGGCAACATGAAGAGCCCCTTGACCCGCGCCTTTGCACCCATTTTGG
GCCAGCCCAATGCCATCGTGGAGGTCTGCGGATCCATGGAGTTCATGCCC
AGCAATAAGTTCAAGCAGGATTTGGGCATAGAGATGTGCCAGGCCACTTC
TCCTTATGCCGACATGTGCGCCAACGAGATCTTCCTGATTGGAGGCTATG
ATACCGAACAGCTGGACTACGAACTCCTTGAGCACATCAAGGCCACGTCT
CCGGCTGGCGCATCGGTGAACCAGAACTTGCACTTTTGTCAGGAATATAA
CTCTGGAAAGTTCCGTAAATTCGACTACACCGCTCTCCGTAATCCCTATG
AGTACGGCAGCTACTTCCCTCCGGATTACAAGCTAAAGAATGCCAAGGCC
CCGGTTCTATTGTACTACGGAGCCAATGACTGGATGTGCGATGTGAGCGA
TGTCCGCAAGTTGAGAGACGAACTGCCCAACATGGCGCTGGACTACCTGG
TGCCGTTCGAGAAGTGGGCCCATCTGGATTTCATTTGGGGCACTGAGGCC
AGAAAATACGTCTACGACGAGGTCTTGAAGCAGATGCAATCCTACGAATA
GAAGCTTTCTAGACCAT

BS17066.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
Lip3-RA 1185 CG8823-PA 1..1185 17..1201 5925 100 Plus
CG8093-RB 1197 CG8093-PB 225..359 232..366 240 78.5 Plus
CG8093-RA 1197 CG8093-PA 225..359 232..366 240 78.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
Lip3-RA 1434 CG8823-RA 159..1344 17..1202 5930 100 Plus
CG8093-RB 1555 CG8093-RB 311..445 232..366 240 78.5 Plus
CG8093-RA 1334 CG8093-RA 311..445 232..366 240 78.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13370788..13371508 821..101 3605 100 Minus
3R 32079331 3R 13370330..13370711 1202..821 1910 100 Minus
3R 32079331 3R 13371662..13371746 101..17 425 100 Minus
2R 25286936 2R 15215170..15215304 366..232 240 78.5 Minus
3L 28110227 3L 20460995..20461065 293..363 220 87.3 Plus
2L 23513712 2L 22182891..22183009 245..363 220 79 Plus
Blast to na_te.dros performed on 2014-11-27 15:41:26 has no hits.

BS17066.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:56 Download gff for BS17066.complete
Subject Subject Range Query Range Percent Splice Strand
Lip3-RA 1..1185 17..1201 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:00:54 Download gff for BS17066.complete
Subject Subject Range Query Range Percent Splice Strand
Lip3-RA 157..1347 13..1208 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:44 Download gff for BS17066.complete
Subject Subject Range Query Range Percent Splice Strand
Lip3-RA 159..1343 17..1201 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:56 Download gff for BS17066.complete
Subject Subject Range Query Range Percent Splice Strand
Lip3-RA 157..1347 13..1208 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:00 Download gff for BS17066.complete
Subject Subject Range Query Range Percent Splice Strand
Lip3-RA 159..1343 17..1201 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:00 Download gff for BS17066.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13370331..13370711 821..1201 100 <- Minus
3R 13370789..13371508 101..820 100 <- Minus
3R 13371663..13371746 17..100 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:44 Download gff for BS17066.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9196053..9196433 821..1201 100 <- Minus
arm_3R 9196511..9197230 101..820 100 <- Minus
arm_3R 9197385..9197468 17..100 100   Minus

BS17066.pep Sequence

Translation from 16 to 1200

> BS17066.pep
MTRGALKVTILLVGLGLVLAGSRPISDCGERIEDDGYPMERHEVVTSDNY
ILTMHRIPYSPKTGESSNRPVAFLMHGMLSSSSDWVLMGPERSLAYMLAD
AGYDVWMGNARGNTYSKAHKYWPTYWQIFWNFSWNEIGMYDVPAMIDYVL
AKTGQQQVQYVGHSQGTTVYLVMVSERPEYNDKIKSAHLLGPAAYMGNMK
SPLTRAFAPILGQPNAIVEVCGSMEFMPSNKFKQDLGIEMCQATSPYADM
CANEIFLIGGYDTEQLDYELLEHIKATSPAGASVNQNLHFCQEYNSGKFR
KFDYTALRNPYEYGSYFPPDYKLKNAKAPVLLYYGANDWMCDVSDVRKLR
DELPNMALDYLVPFEKWAHLDFIWGTEARKYVYDEVLKQMQSYE*

BS17066.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
Lip3-PA 394 CG8823-PA 1..394 1..394 2130 100 Plus
CG8093-PB 398 CG8093-PB 2..397 6..392 998 49.4 Plus
CG8093-PA 398 CG8093-PA 2..397 6..392 998 49.4 Plus
CG31871-PA 531 CG31871-PA 87..438 36..394 869 47.1 Plus
CG3635-PB 425 CG3635-PB 24..419 2..394 835 41.4 Plus