Clone Sequence Records
BS17066.3prime Sequence
813 bp (812 high quality bases) assembled on 2007-05-15
> BS17066.3prime
ATGGTCTAGAAAGCTTCTATTCGTAGGATTGCATCTGCTTCAAGACCTCG
TCGTAGACGTATTTTCTGGCCTCAGTGCCCCAAATGAAATCCAGATGGGC
CCACTTCTCGAACGGCACCAGGTAGTCCAGCGCCATGTTGGGCAGTTCGT
CTCTCAACTTGCGGACATCGCTCACATCGCACATCCAGTCATTGGCTCCG
TAGTACAATAGAACCGGGGCCTTGGCATTCTTTAGCTTGTAATCCGGAGG
GAAGTAGCTGCCGTACTCATAGGGATTACGGAGAGCGGTGTAGTCGAATT
TACGGAACTTTCCAGAGTTATATTCCTGACAAAAGTGCAAGTTCTGGTTC
ACCGATGCGCCAGCCGGAGACGTGGCCTTGATGTGCTCAAGGAGTTCGTA
GTCCAGCTGTTCGGTATCATAGCCTCCAATCAGGAAGATCTCGTTGGCGC
ACATGTCGGCATAAGGAGAAGTGGCCTGGCACATCTCTATGCCCAAATCC
TGCTTGAACTTATTGCTGGGCATGAACTCCATGGATCCGCAGACCTCCAC
GATGGCATTGGGCTGGCCCAAAATGGGTGCAAAGGCGCGGGTCAAGGGGC
TCTTCATGTTGCCCATATAGGCGGCTGGTCCCAGAAGATGGGCGGACTTG
ATCTTGTCATTGTACTCGGGTCTCTCCGACACCATCACCAGATAGACAGT
GGTACCCTGGGAGTGGCCCACATATTGCACCTGCTGCTGTCCAGTCTTTG
CCAAGACATAATCAATCATCGCCGGAACGTCGTACATGCCGATCTCGTTC
CAGCTGAAGTTCC
BS17066.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:00:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8823-PA | 1185 | Lip3-RA | 389..1185 | 813..17 | 3985 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:59:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lip3-RA | 1434 | CG8823-RA | 547..1344 | 813..16 | 3990 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:59:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13370788..13371204 | 397..813 | 2085 | 100 | Plus |
3R | 32079331 | 3R | 13370330..13370711 | 16..397 | 1910 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:59:38 has no hits.
BS17066.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:00:23 Download gff for
BS17066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8823-PA | 389..1185 | 17..813 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:35:32 Download gff for
BS17066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip3-RA | 547..1347 | 10..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:41 Download gff for
BS17066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip3-RA | 547..1347 | 10..813 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:41 Download gff for
BS17066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13370327..13370711 | 10..397 | 99 | <- | Plus |
3R | 13370789..13371204 | 398..813 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:35:32 Download gff for
BS17066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9196049..9196433 | 10..397 | 99 | <- | Plus |
arm_3R | 9196511..9196926 | 398..813 | 100 | | Plus |
BS17066.5prime Sequence
886 bp (870 high quality bases) assembled on 2007-05-15
> BS17066.5prime
GAAGTTATCAGTCGACATGACAAGAGGAGCGTTAAAAGTGACCATTTTAC
TGGTCGGATTGGGCCTGGTTTTGGCCGGATCTCGGCCTATTTCTGATTGC
GGTGAGCGCATTGAAGACGATGGCTACCCGATGGAGCGCCACGAGGTGGT
CACCAGTGACAACTACATCCTGACTATGCACCGCATCCCGTATTCCCCCA
AAACGGGTGAATCTTCCAACCGACCGGTGGCCTTCCTCATGCACGGCATG
CTGAGTTCTTCCTCCGATTGGGTGCTCATGGGTCCAGAGCGATCCCTGGC
CTATATGCTGGCCGATGCCGGCTACGATGTGTGGATGGGCAATGCCCGAG
GCAACACCTACTCCAAGGCGCACAAGTACTGGCCCACTTACTGGCAGATC
TTCTGGAACTTCAGCTGGAACGAGATCGGCATGTACGACGTTCCGGCGAT
GATTGATTATGTCTTGGCAAAGACTGGACAGCAGCAGGTGCAATATGTGG
GCCACTCCCAGGGTACCACTGTCTATCTGGTGATGGTGTCGGAGAGACCC
GAGTACAATGACAAGATCAAGTCCGCCCATCTTCTGGGACCAGCCGCCTA
TATGGGCAACATGAAGAGCCCCTTGACCCGCGCCTTTGCACCCATTTTGG
GCCAGCCCAATGCCATCGTGGAGGTCTGCGGATCCATGGAGTTCATGCCC
AGCAATAAGTTCAAGCAGGATTTGGGCATAGAGATGTGCCAGGCCACTTC
TCCTTATGCCGACATGTGCGCCAACGAGATCTTCCTGATTGGAGGCTATG
ATACCGAACAGCTGGACTACGAACTCCTTGAGCACATCAAGGCCACGTCT
CCGGCTGGCGCATCGGTGAACCAGAACTTGCACTTT
BS17066.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:56:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8823-PA | 1185 | Lip3-RA | 1..870 | 17..886 | 4350 | 100 | Plus |
CG8093-PA | 1197 | CG8093-RA | 313..359 | 320..366 | 185 | 95.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:17:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lip3-RA | 1434 | CG8823-RA | 159..1028 | 17..886 | 4350 | 100 | Plus |
CG8093-RB | 1555 | CG8093-RB | 311..445 | 232..366 | 240 | 78.5 | Plus |
CG8093-RA | 1334 | CG8093-RA | 311..445 | 232..366 | 240 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:17:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13370788..13371508 | 821..101 | 3605 | 100 | Minus |
3R | 32079331 | 3R | 13371662..13371746 | 101..17 | 425 | 100 | Minus |
3R | 32079331 | 3R | 13370646..13370711 | 886..821 | 330 | 100 | Minus |
2R | 25286936 | 2R | 15215170..15215304 | 366..232 | 240 | 78.5 | Minus |
3L | 28110227 | 3L | 20460995..20461065 | 293..363 | 220 | 87.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:17:38 has no hits.
BS17066.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:56:19 Download gff for
BS17066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8823-PA | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:18:03 Download gff for
BS17066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip3-RA | 157..1028 | 13..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:59 Download gff for
BS17066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip3-RA | 157..1028 | 13..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:59 Download gff for
BS17066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13370646..13370711 | 821..886 | 100 | <- | Minus |
3R | 13370789..13371508 | 101..820 | 100 | <- | Minus |
3R | 13371663..13371748 | 13..100 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:18:03 Download gff for
BS17066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9196368..9196433 | 821..886 | 100 | <- | Minus |
arm_3R | 9196511..9197230 | 101..820 | 100 | <- | Minus |
arm_3R | 9197385..9197470 | 13..100 | 97 | | Minus |
BS17066.complete Sequence
1217 bp assembled on 2007-05-08
GenBank Submission: FJ638242
> BS17066.complete
GAAGTTATCAGTCGACATGACAAGAGGAGCGTTAAAAGTGACCATTTTAC
TGGTCGGATTGGGCCTGGTTTTGGCCGGATCTCGGCCTATTTCTGATTGC
GGTGAGCGCATTGAAGACGATGGCTACCCGATGGAGCGCCACGAGGTGGT
CACCAGTGACAACTACATCCTGACTATGCACCGCATCCCGTATTCCCCCA
AAACGGGTGAATCTTCCAACCGACCGGTGGCCTTCCTCATGCACGGCATG
CTGAGTTCTTCCTCCGATTGGGTGCTCATGGGTCCAGAGCGATCCCTGGC
CTATATGCTGGCCGATGCCGGCTACGATGTGTGGATGGGCAATGCCCGAG
GCAACACCTACTCCAAGGCGCACAAGTACTGGCCCACTTACTGGCAGATC
TTCTGGAACTTCAGCTGGAACGAGATCGGCATGTACGACGTTCCGGCGAT
GATTGATTATGTCTTGGCAAAGACTGGACAGCAGCAGGTGCAATATGTGG
GCCACTCCCAGGGTACCACTGTCTATCTGGTGATGGTGTCGGAGAGACCC
GAGTACAATGACAAGATCAAGTCCGCCCATCTTCTGGGACCAGCCGCCTA
TATGGGCAACATGAAGAGCCCCTTGACCCGCGCCTTTGCACCCATTTTGG
GCCAGCCCAATGCCATCGTGGAGGTCTGCGGATCCATGGAGTTCATGCCC
AGCAATAAGTTCAAGCAGGATTTGGGCATAGAGATGTGCCAGGCCACTTC
TCCTTATGCCGACATGTGCGCCAACGAGATCTTCCTGATTGGAGGCTATG
ATACCGAACAGCTGGACTACGAACTCCTTGAGCACATCAAGGCCACGTCT
CCGGCTGGCGCATCGGTGAACCAGAACTTGCACTTTTGTCAGGAATATAA
CTCTGGAAAGTTCCGTAAATTCGACTACACCGCTCTCCGTAATCCCTATG
AGTACGGCAGCTACTTCCCTCCGGATTACAAGCTAAAGAATGCCAAGGCC
CCGGTTCTATTGTACTACGGAGCCAATGACTGGATGTGCGATGTGAGCGA
TGTCCGCAAGTTGAGAGACGAACTGCCCAACATGGCGCTGGACTACCTGG
TGCCGTTCGAGAAGTGGGCCCATCTGGATTTCATTTGGGGCACTGAGGCC
AGAAAATACGTCTACGACGAGGTCTTGAAGCAGATGCAATCCTACGAATA
GAAGCTTTCTAGACCAT
BS17066.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:41:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lip3-RA | 1185 | CG8823-PA | 1..1185 | 17..1201 | 5925 | 100 | Plus |
CG8093-RB | 1197 | CG8093-PB | 225..359 | 232..366 | 240 | 78.5 | Plus |
CG8093-RA | 1197 | CG8093-PA | 225..359 | 232..366 | 240 | 78.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:41:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lip3-RA | 1434 | CG8823-RA | 159..1344 | 17..1202 | 5930 | 100 | Plus |
CG8093-RB | 1555 | CG8093-RB | 311..445 | 232..366 | 240 | 78.5 | Plus |
CG8093-RA | 1334 | CG8093-RA | 311..445 | 232..366 | 240 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:41:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13370788..13371508 | 821..101 | 3605 | 100 | Minus |
3R | 32079331 | 3R | 13370330..13370711 | 1202..821 | 1910 | 100 | Minus |
3R | 32079331 | 3R | 13371662..13371746 | 101..17 | 425 | 100 | Minus |
2R | 25286936 | 2R | 15215170..15215304 | 366..232 | 240 | 78.5 | Minus |
3L | 28110227 | 3L | 20460995..20461065 | 293..363 | 220 | 87.3 | Plus |
2L | 23513712 | 2L | 22182891..22183009 | 245..363 | 220 | 79 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:41:26 has no hits.
BS17066.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:56 Download gff for
BS17066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip3-RA | 1..1185 | 17..1201 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:00:54 Download gff for
BS17066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip3-RA | 157..1347 | 13..1208 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:44 Download gff for
BS17066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip3-RA | 159..1343 | 17..1201 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:56 Download gff for
BS17066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip3-RA | 157..1347 | 13..1208 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:00 Download gff for
BS17066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip3-RA | 159..1343 | 17..1201 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:00 Download gff for
BS17066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13370331..13370711 | 821..1201 | 100 | <- | Minus |
3R | 13370789..13371508 | 101..820 | 100 | <- | Minus |
3R | 13371663..13371746 | 17..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:44 Download gff for
BS17066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9196053..9196433 | 821..1201 | 100 | <- | Minus |
arm_3R | 9196511..9197230 | 101..820 | 100 | <- | Minus |
arm_3R | 9197385..9197468 | 17..100 | 100 | | Minus |
BS17066.pep Sequence
Translation from 16 to 1200
> BS17066.pep
MTRGALKVTILLVGLGLVLAGSRPISDCGERIEDDGYPMERHEVVTSDNY
ILTMHRIPYSPKTGESSNRPVAFLMHGMLSSSSDWVLMGPERSLAYMLAD
AGYDVWMGNARGNTYSKAHKYWPTYWQIFWNFSWNEIGMYDVPAMIDYVL
AKTGQQQVQYVGHSQGTTVYLVMVSERPEYNDKIKSAHLLGPAAYMGNMK
SPLTRAFAPILGQPNAIVEVCGSMEFMPSNKFKQDLGIEMCQATSPYADM
CANEIFLIGGYDTEQLDYELLEHIKATSPAGASVNQNLHFCQEYNSGKFR
KFDYTALRNPYEYGSYFPPDYKLKNAKAPVLLYYGANDWMCDVSDVRKLR
DELPNMALDYLVPFEKWAHLDFIWGTEARKYVYDEVLKQMQSYE*
BS17066.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lip3-PA | 394 | CG8823-PA | 1..394 | 1..394 | 2130 | 100 | Plus |
CG8093-PB | 398 | CG8093-PB | 2..397 | 6..392 | 998 | 49.4 | Plus |
CG8093-PA | 398 | CG8093-PA | 2..397 | 6..392 | 998 | 49.4 | Plus |
CG31871-PA | 531 | CG31871-PA | 87..438 | 36..394 | 869 | 47.1 | Plus |
CG3635-PB | 425 | CG3635-PB | 24..419 | 2..394 | 835 | 41.4 | Plus |