Clone Sequence Records
BS17067.3prime Sequence
516 bp (516 high quality bases) assembled on 2007-05-15
> BS17067.3prime
ATGGTCTAGAAAGCTTTCATTTATCCTCACACCACTCGTTCTCCTTGCGC
ACCTGTTCCTCCTCCTGTGGCAGAAAGTCATTCTGGATGGCGAAGGTGTC
GCGAATAGCCTGCGGCGACTTGCCCTTGATCATATTGGCCACCGTCTTGC
AGGTGACGTCGAGCAGACCCTGGATATTCAGGTAGTTTGCCGCGAGGATC
AGTTCGAACAGCGTGCCCTGGTCGACTTTGAGAAAGTCAGCGTCCCAGGA
TGAGATGTCATCAGTGCGCTTCTCCTTGTTCTCAACCTCTTCGGTAACCA
CAGGATCGTCCTTGTGATAGGTGGCCCAGTGGAGCACTTTCTTCAGGATC
AGCGAGTTGACATTCGGCAACGGCAGCACACTGTTGTCGCTCTCATCGCC
CAAATCCTCTATTGCAATGCGAATCGTTTCCGAGCACTTGGCGATCTCCT
GATCCGTGTCAAAGATCTCCTTGTCCGCAGACTCCAGCCGAATGATGGGC
ATGTCGACTGATAACT
BS17067.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8881-PA | 486 | skpB-RA | 1..486 | 502..17 | 2430 | 100 | Minus |
CG16983-PE | 489 | skpA-RE | 442..482 | 64..24 | 155 | 95.1 | Minus |
CG16983-PF | 489 | skpA-RF | 442..482 | 64..24 | 155 | 95.1 | Minus |
CG16983-PC | 489 | skpA-RC | 442..482 | 64..24 | 155 | 95.1 | Minus |
CG16983-PB | 489 | skpA-RB | 442..482 | 64..24 | 155 | 95.1 | Minus |
CG16983-PG | 489 | skpA-RG | 442..482 | 64..24 | 155 | 95.1 | Minus |
CG16983-PD | 489 | skpA-RD | 442..482 | 64..24 | 155 | 95.1 | Minus |
CG16983-PA | 489 | skpA-RA | 442..482 | 64..24 | 155 | 95.1 | Minus |
CG16983-PH | 489 | skpA-RH | 442..482 | 64..24 | 155 | 95.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:18:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SkpB-RA | 877 | CG8881-RA | 248..734 | 502..16 | 2435 | 100 | Minus |
SkpA-RI | 826 | CG16983-RI | 167..518 | 375..24 | 440 | 75.7 | Minus |
SkpA-RH | 1544 | CG16983-RH | 885..1236 | 375..24 | 440 | 75.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:18:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12139438..12139924 | 16..502 | 2435 | 100 | Plus |
X | 23542271 | X | 657240..657591 | 375..24 | 440 | 75 | Minus |
X | 23542271 | X | 19816391..19816567 | 261..85 | 210 | 74.6 | Minus |
2R | 25286936 | 2R | 23458303..23458401 | 122..220 | 195 | 79.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:18:37 has no hits.
BS17067.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:58:00 Download gff for
BS17067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8881-PA | 1..486 | 17..502 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:13:01 Download gff for
BS17067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpB-RA | 240..734 | 16..510 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:35 Download gff for
BS17067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SkpB-RA | 240..734 | 16..510 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:35 Download gff for
BS17067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12139438..12139924 | 16..502 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:13:01 Download gff for
BS17067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8026943..8027429 | 16..502 | 100 | <- | Plus |
BS17067.5prime Sequence
516 bp (516 high quality bases) assembled on 2007-05-15
> BS17067.5prime
GAAGTTATCAGTCGACATGCCCATCATTCGGCTGGAGTCTGCGGACAAGG
AGATCTTTGACACGGATCAGGAGATCGCCAAGTGCTCGGAAACGATTCGC
ATTGCAATAGAGGATTTGGGCGATGAGAGCGACAACAGTGTGCTGCCGTT
GCCGAATGTCAACTCGCTGATCCTGAAGAAAGTGCTCCACTGGGCCACCT
ATCACAAGGACGATCCTGTGGTTACCGAAGAGGTTGAGAACAAGGAGAAG
CGCACTGATGACATCTCATCCTGGGACGCTGACTTTCTCAAAGTCGACCA
GGGCACGCTGTTCGAACTGATCCTCGCGGCAAACTACCTGAATATCCAGG
GTCTGCTCGACGTCACCTGCAAGACGGTGGCCAATATGATCAAGGGCAAG
TCGCCGCAGGCTATTCGCGACACCTTCGCCATCCAGAATGACTTTCTGCC
ACAGGAGGAGGAACAGGTGCGCAAGGAGAACGAGTGGTGTGAGGATAAAT
GAAAGCTTTCTAGACC
BS17067.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:54:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8881-PA | 486 | skpB-RA | 1..486 | 17..502 | 2430 | 100 | Plus |
CG16983-PE | 489 | skpA-RE | 442..482 | 455..495 | 155 | 95.1 | Plus |
CG16983-PF | 489 | skpA-RF | 442..482 | 455..495 | 155 | 95.1 | Plus |
CG16983-PC | 489 | skpA-RC | 442..482 | 455..495 | 155 | 95.1 | Plus |
CG16983-PB | 489 | skpA-RB | 442..482 | 455..495 | 155 | 95.1 | Plus |
CG16983-PG | 489 | skpA-RG | 442..482 | 455..495 | 155 | 95.1 | Plus |
CG16983-PD | 489 | skpA-RD | 442..482 | 455..495 | 155 | 95.1 | Plus |
CG16983-PA | 489 | skpA-RA | 442..482 | 455..495 | 155 | 95.1 | Plus |
CG16983-PH | 489 | skpA-RH | 442..482 | 455..495 | 155 | 95.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:39:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SkpB-RA | 877 | CG8881-RA | 248..734 | 17..503 | 2435 | 100 | Plus |
SkpA-RI | 826 | CG16983-RI | 167..518 | 144..495 | 440 | 75.7 | Plus |
SkpA-RH | 1544 | CG16983-RH | 885..1236 | 144..495 | 440 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:39:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12139438..12139924 | 503..17 | 2435 | 100 | Minus |
X | 23542271 | X | 657240..657591 | 144..495 | 440 | 75 | Plus |
X | 23542271 | X | 19816391..19816567 | 258..434 | 210 | 74.6 | Plus |
2R | 25286936 | 2R | 23458303..23458401 | 397..299 | 195 | 79.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:39:56 has no hits.
BS17067.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:54:20 Download gff for
BS17067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8881-PA | 1..486 | 17..502 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:20:06 Download gff for
BS17067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpB-RA | 240..734 | 9..503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:19:21 Download gff for
BS17067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SkpB-RA | 240..734 | 9..503 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:19:21 Download gff for
BS17067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12139438..12139924 | 17..503 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:20:06 Download gff for
BS17067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8026943..8027429 | 17..503 | 100 | <- | Minus |
BS17067.complete Sequence
518 bp assembled on 2007-05-08
GenBank Submission: FJ638243
> BS17067.complete
GAAGTTATCAGTCGACATGCCCATCATTCGGCTGGAGTCTGCGGACAAGG
AGATCTTTGACACGGATCAGGAGATCGCCAAGTGCTCGGAAACGATTCGC
ATTGCAATAGAGGATTTGGGCGATGAGAGCGACAACAGTGTGCTGCCGTT
GCCGAATGTCAACTCGCTGATCCTGAAGAAAGTGCTCCACTGGGCCACCT
ATCACAAGGACGATCCTGTGGTTACCGAAGAGGTTGAGAACAAGGAGAAG
CGCACTGATGACATCTCATCCTGGGACGCTGACTTTCTCAAAGTCGACCA
GGGCACGCTGTTCGAACTGATCCTCGCGGCAAACTACCTGAATATCCAGG
GTCTGCTCGACGTCACCTGCAAGACGGTGGCCAATATGATCAAGGGCAAG
TCGCCGCAGGCTATTCGCGACACCTTCGCCATCCAGAATGACTTTCTGCC
ACAGGAGGAGGAACAGGTGCGCAAGGAGAACGAGTGGTGTGAGGATAAAT
GAAAGCTTTCTAGACCAT
BS17067.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:23:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SkpB-RA | 486 | CG8881-PA | 1..486 | 17..502 | 2430 | 100 | Plus |
SkpA-RI | 489 | CG16983-PI | 131..482 | 144..495 | 440 | 75 | Plus |
SkpA-RH | 489 | CG16983-PH | 131..482 | 144..495 | 440 | 75 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SkpB-RA | 877 | CG8881-RA | 248..734 | 17..503 | 2435 | 100 | Plus |
SkpA-RI | 826 | CG16983-RI | 167..518 | 144..495 | 440 | 75 | Plus |
SkpA-RH | 1544 | CG16983-RH | 885..1236 | 144..495 | 440 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12139438..12139924 | 503..17 | 2435 | 100 | Minus |
X | 23542271 | X | 657240..657591 | 144..495 | 440 | 75 | Plus |
X | 23542271 | X | 19816391..19816567 | 258..434 | 210 | 74.6 | Plus |
2R | 25286936 | 2R | 23458303..23458401 | 397..299 | 195 | 79.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:23:57 has no hits.
BS17067.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:57 Download gff for
BS17067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpB-RA | 1..486 | 17..502 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:00:56 Download gff for
BS17067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpB-RA | 73..567 | 9..503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:56 Download gff for
BS17067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpB-RA | 248..732 | 17..501 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:57 Download gff for
BS17067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpB-RA | 73..567 | 9..503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:34 Download gff for
BS17067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SkpB-RA | 248..732 | 17..501 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:34 Download gff for
BS17067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12139440..12139924 | 17..501 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:56 Download gff for
BS17067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8026945..8027429 | 17..501 | 100 | | Minus |
BS17067.pep Sequence
Translation from 16 to 501
> BS17067.pep
MPIIRLESADKEIFDTDQEIAKCSETIRIAIEDLGDESDNSVLPLPNVNS
LILKKVLHWATYHKDDPVVTEEVENKEKRTDDISSWDADFLKVDQGTLFE
LILAANYLNIQGLLDVTCKTVANMIKGKSPQAIRDTFAIQNDFLPQEEEQ
VRKENEWCEDK*
BS17067.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SkpB-PA | 161 | CG8881-PA | 1..161 | 1..161 | 835 | 100 | Plus |
SkpA-PI | 162 | CG16983-PI | 1..162 | 1..161 | 622 | 73.5 | Plus |
SkpA-PH | 162 | CG16983-PH | 1..162 | 1..161 | 622 | 73.5 | Plus |
SkpA-PA | 162 | CG16983-PA | 1..162 | 1..161 | 622 | 73.5 | Plus |
SkpA-PD | 162 | CG16983-PD | 1..162 | 1..161 | 622 | 73.5 | Plus |