Clone BS17067 Report

Search the DGRC for BS17067

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:170
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptSkpB-RA
Protein status:BS17067.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17067.3prime Sequence

516 bp (516 high quality bases) assembled on 2007-05-15

> BS17067.3prime
ATGGTCTAGAAAGCTTTCATTTATCCTCACACCACTCGTTCTCCTTGCGC
ACCTGTTCCTCCTCCTGTGGCAGAAAGTCATTCTGGATGGCGAAGGTGTC
GCGAATAGCCTGCGGCGACTTGCCCTTGATCATATTGGCCACCGTCTTGC
AGGTGACGTCGAGCAGACCCTGGATATTCAGGTAGTTTGCCGCGAGGATC
AGTTCGAACAGCGTGCCCTGGTCGACTTTGAGAAAGTCAGCGTCCCAGGA
TGAGATGTCATCAGTGCGCTTCTCCTTGTTCTCAACCTCTTCGGTAACCA
CAGGATCGTCCTTGTGATAGGTGGCCCAGTGGAGCACTTTCTTCAGGATC
AGCGAGTTGACATTCGGCAACGGCAGCACACTGTTGTCGCTCTCATCGCC
CAAATCCTCTATTGCAATGCGAATCGTTTCCGAGCACTTGGCGATCTCCT
GATCCGTGTCAAAGATCTCCTTGTCCGCAGACTCCAGCCGAATGATGGGC
ATGTCGACTGATAACT

BS17067.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8881-PA 486 skpB-RA 1..486 502..17 2430 100 Minus
CG16983-PE 489 skpA-RE 442..482 64..24 155 95.1 Minus
CG16983-PF 489 skpA-RF 442..482 64..24 155 95.1 Minus
CG16983-PC 489 skpA-RC 442..482 64..24 155 95.1 Minus
CG16983-PB 489 skpA-RB 442..482 64..24 155 95.1 Minus
CG16983-PG 489 skpA-RG 442..482 64..24 155 95.1 Minus
CG16983-PD 489 skpA-RD 442..482 64..24 155 95.1 Minus
CG16983-PA 489 skpA-RA 442..482 64..24 155 95.1 Minus
CG16983-PH 489 skpA-RH 442..482 64..24 155 95.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
SkpB-RA 877 CG8881-RA 248..734 502..16 2435 100 Minus
SkpA-RI 826 CG16983-RI 167..518 375..24 440 75.7 Minus
SkpA-RH 1544 CG16983-RH 885..1236 375..24 440 75.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12139438..12139924 16..502 2435 100 Plus
X 23542271 X 657240..657591 375..24 440 75 Minus
X 23542271 X 19816391..19816567 261..85 210 74.6 Minus
2R 25286936 2R 23458303..23458401 122..220 195 79.8 Plus
Blast to na_te.dros performed on 2015-02-10 21:18:37 has no hits.

BS17067.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:58:00 Download gff for BS17067.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8881-PA 1..486 17..502 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:13:01 Download gff for BS17067.3prime
Subject Subject Range Query Range Percent Splice Strand
skpB-RA 240..734 16..510 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:35 Download gff for BS17067.3prime
Subject Subject Range Query Range Percent Splice Strand
SkpB-RA 240..734 16..510 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:35 Download gff for BS17067.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12139438..12139924 16..502 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:13:01 Download gff for BS17067.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8026943..8027429 16..502 100 <- Plus

BS17067.5prime Sequence

516 bp (516 high quality bases) assembled on 2007-05-15

> BS17067.5prime
GAAGTTATCAGTCGACATGCCCATCATTCGGCTGGAGTCTGCGGACAAGG
AGATCTTTGACACGGATCAGGAGATCGCCAAGTGCTCGGAAACGATTCGC
ATTGCAATAGAGGATTTGGGCGATGAGAGCGACAACAGTGTGCTGCCGTT
GCCGAATGTCAACTCGCTGATCCTGAAGAAAGTGCTCCACTGGGCCACCT
ATCACAAGGACGATCCTGTGGTTACCGAAGAGGTTGAGAACAAGGAGAAG
CGCACTGATGACATCTCATCCTGGGACGCTGACTTTCTCAAAGTCGACCA
GGGCACGCTGTTCGAACTGATCCTCGCGGCAAACTACCTGAATATCCAGG
GTCTGCTCGACGTCACCTGCAAGACGGTGGCCAATATGATCAAGGGCAAG
TCGCCGCAGGCTATTCGCGACACCTTCGCCATCCAGAATGACTTTCTGCC
ACAGGAGGAGGAACAGGTGCGCAAGGAGAACGAGTGGTGTGAGGATAAAT
GAAAGCTTTCTAGACC

BS17067.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8881-PA 486 skpB-RA 1..486 17..502 2430 100 Plus
CG16983-PE 489 skpA-RE 442..482 455..495 155 95.1 Plus
CG16983-PF 489 skpA-RF 442..482 455..495 155 95.1 Plus
CG16983-PC 489 skpA-RC 442..482 455..495 155 95.1 Plus
CG16983-PB 489 skpA-RB 442..482 455..495 155 95.1 Plus
CG16983-PG 489 skpA-RG 442..482 455..495 155 95.1 Plus
CG16983-PD 489 skpA-RD 442..482 455..495 155 95.1 Plus
CG16983-PA 489 skpA-RA 442..482 455..495 155 95.1 Plus
CG16983-PH 489 skpA-RH 442..482 455..495 155 95.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
SkpB-RA 877 CG8881-RA 248..734 17..503 2435 100 Plus
SkpA-RI 826 CG16983-RI 167..518 144..495 440 75.7 Plus
SkpA-RH 1544 CG16983-RH 885..1236 144..495 440 75.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12139438..12139924 503..17 2435 100 Minus
X 23542271 X 657240..657591 144..495 440 75 Plus
X 23542271 X 19816391..19816567 258..434 210 74.6 Plus
2R 25286936 2R 23458303..23458401 397..299 195 79.8 Minus
Blast to na_te.dros performed on 2015-02-13 06:39:56 has no hits.

BS17067.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:54:20 Download gff for BS17067.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8881-PA 1..486 17..502 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:20:06 Download gff for BS17067.5prime
Subject Subject Range Query Range Percent Splice Strand
skpB-RA 240..734 9..503 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:19:21 Download gff for BS17067.5prime
Subject Subject Range Query Range Percent Splice Strand
SkpB-RA 240..734 9..503 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:19:21 Download gff for BS17067.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12139438..12139924 17..503 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:20:06 Download gff for BS17067.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8026943..8027429 17..503 100 <- Minus

BS17067.complete Sequence

518 bp assembled on 2007-05-08

GenBank Submission: FJ638243

> BS17067.complete
GAAGTTATCAGTCGACATGCCCATCATTCGGCTGGAGTCTGCGGACAAGG
AGATCTTTGACACGGATCAGGAGATCGCCAAGTGCTCGGAAACGATTCGC
ATTGCAATAGAGGATTTGGGCGATGAGAGCGACAACAGTGTGCTGCCGTT
GCCGAATGTCAACTCGCTGATCCTGAAGAAAGTGCTCCACTGGGCCACCT
ATCACAAGGACGATCCTGTGGTTACCGAAGAGGTTGAGAACAAGGAGAAG
CGCACTGATGACATCTCATCCTGGGACGCTGACTTTCTCAAAGTCGACCA
GGGCACGCTGTTCGAACTGATCCTCGCGGCAAACTACCTGAATATCCAGG
GTCTGCTCGACGTCACCTGCAAGACGGTGGCCAATATGATCAAGGGCAAG
TCGCCGCAGGCTATTCGCGACACCTTCGCCATCCAGAATGACTTTCTGCC
ACAGGAGGAGGAACAGGTGCGCAAGGAGAACGAGTGGTGTGAGGATAAAT
GAAAGCTTTCTAGACCAT

BS17067.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:23:58
Subject Length Description Subject Range Query Range Score Percent Strand
SkpB-RA 486 CG8881-PA 1..486 17..502 2430 100 Plus
SkpA-RI 489 CG16983-PI 131..482 144..495 440 75 Plus
SkpA-RH 489 CG16983-PH 131..482 144..495 440 75 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:59
Subject Length Description Subject Range Query Range Score Percent Strand
SkpB-RA 877 CG8881-RA 248..734 17..503 2435 100 Plus
SkpA-RI 826 CG16983-RI 167..518 144..495 440 75 Plus
SkpA-RH 1544 CG16983-RH 885..1236 144..495 440 75 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12139438..12139924 503..17 2435 100 Minus
X 23542271 X 657240..657591 144..495 440 75 Plus
X 23542271 X 19816391..19816567 258..434 210 74.6 Plus
2R 25286936 2R 23458303..23458401 397..299 195 79.8 Minus
Blast to na_te.dros performed on 2014-11-27 14:23:57 has no hits.

BS17067.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:57 Download gff for BS17067.complete
Subject Subject Range Query Range Percent Splice Strand
skpB-RA 1..486 17..502 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:00:56 Download gff for BS17067.complete
Subject Subject Range Query Range Percent Splice Strand
skpB-RA 73..567 9..503 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:56 Download gff for BS17067.complete
Subject Subject Range Query Range Percent Splice Strand
skpB-RA 248..732 17..501 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:57 Download gff for BS17067.complete
Subject Subject Range Query Range Percent Splice Strand
skpB-RA 73..567 9..503 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:34 Download gff for BS17067.complete
Subject Subject Range Query Range Percent Splice Strand
SkpB-RA 248..732 17..501 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:34 Download gff for BS17067.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12139440..12139924 17..501 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:56 Download gff for BS17067.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8026945..8027429 17..501 100   Minus

BS17067.pep Sequence

Translation from 16 to 501

> BS17067.pep
MPIIRLESADKEIFDTDQEIAKCSETIRIAIEDLGDESDNSVLPLPNVNS
LILKKVLHWATYHKDDPVVTEEVENKEKRTDDISSWDADFLKVDQGTLFE
LILAANYLNIQGLLDVTCKTVANMIKGKSPQAIRDTFAIQNDFLPQEEEQ
VRKENEWCEDK*

BS17067.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
SkpB-PA 161 CG8881-PA 1..161 1..161 835 100 Plus
SkpA-PI 162 CG16983-PI 1..162 1..161 622 73.5 Plus
SkpA-PH 162 CG16983-PH 1..162 1..161 622 73.5 Plus
SkpA-PA 162 CG16983-PA 1..162 1..161 622 73.5 Plus
SkpA-PD 162 CG16983-PD 1..162 1..161 622 73.5 Plus