Clone BS17068 Report

Search the DGRC for BS17068

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:170
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptAcp26Ab-RA
Protein status:BS17068.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17068.3prime Sequence

303 bp (303 high quality bases) assembled on 2007-05-15

> BS17068.3prime
ATGGTCTAGAAAGCTTTTATGCCATGTTCAGTTGCTGGCGCACACTCTCT
ATTTCATCAGGACTCATGACATCCGAGTTGAAGTCTGCTTTGTGAGTTTG
TATCAAATGCCCAGTCGCATCGTTCACACTATCCTGAACACTGTAGTCGT
ATAGGGTTCTCAACATGCCATTCATCACTTTCTGGGATCTTGATTGTGAA
CTAGACTGAACGCTTATAAAGGGGGCAGCATCGCTAAATTGCCAAAGGCA
AATGCAGGAGAAAATGCAGATCACCGCGAAGTAGTTCATGTCGACTGATA
ACT

BS17068.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9024-PA 273 Acp26Ab-RA 1..273 289..17 1365 100 Minus
CG9024-PB 273 Acp26Ab-RB 1..273 289..17 1365 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
Acp26Ab-RC 408 CG9024-RC 26..298 289..17 1365 100 Minus
Acp26Ab-RB 504 CG9024-RB 26..298 289..17 1365 100 Minus
Acp26Ab-RA 453 CG9024-RA 26..298 289..17 1365 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5892504..5892745 17..258 1210 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:51:45 has no hits.

BS17068.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:58:09 Download gff for BS17068.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9024-PB 1..273 17..289 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:32 Download gff for BS17068.3prime
Subject Subject Range Query Range Percent Splice Strand
Acp26Ab-RA 20..301 10..294 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:30:25 Download gff for BS17068.3prime
Subject Subject Range Query Range Percent Splice Strand
Acp26Ab-RA 20..301 10..294 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:30:25 Download gff for BS17068.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5892505..5892745 18..258 100 <- Plus
2L 5892807..5892843 259..294 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:32 Download gff for BS17068.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5892505..5892745 18..258 100 <- Plus
arm_2L 5892807..5892843 259..294 94   Plus

BS17068.5prime Sequence

303 bp (303 high quality bases) assembled on 2007-05-15

> BS17068.5prime
GAAGTTATCAGTCGACATGAACTACTTCGCGGTGATCTGCATTTTCTCCT
GCATTTGCCTTTGGCAATTTAGCGATGCTGCCCCCTTTATAAGCGTTCAG
TCTAGTTCACAATCAAGATCCCAGAAAGTGATGAATGGCATGTTGAGAAC
CCTATACGACTACAGTGTTCAGGATAGTGTGAACGATGCGACTGGGCATT
TGATACAAACTCACAAAGCAGACTTCAACTCGGATGTCATGAGTCCTGAT
GAAATAGAGAGTGTGCGCCAGCAACTGAACATGGCATAAAAGCTTTCTAG
ACC

BS17068.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9024-PA 273 Acp26Ab-RA 1..273 17..289 1365 100 Plus
CG9024-PB 273 Acp26Ab-RB 1..273 17..289 1365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
Acp26Ab-RC 408 CG9024-RC 26..298 17..289 1365 100 Plus
Acp26Ab-RB 504 CG9024-RB 26..298 17..289 1365 100 Plus
Acp26Ab-RA 453 CG9024-RA 26..298 17..289 1365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5892504..5892745 289..48 1210 100 Minus
Blast to na_te.dros performed on 2015-02-04 21:13:15 has no hits.

BS17068.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:54:29 Download gff for BS17068.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9024-PB 1..273 17..289 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:30:34 Download gff for BS17068.5prime
Subject Subject Range Query Range Percent Splice Strand
Acp26Ab-RA 20..301 12..296 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:56:00 Download gff for BS17068.5prime
Subject Subject Range Query Range Percent Splice Strand
Acp26Ab-RA 20..301 12..296 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:56:00 Download gff for BS17068.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5892505..5892745 48..288 100 <- Minus
2L 5892807..5892843 12..47 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:30:34 Download gff for BS17068.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5892807..5892843 12..47 94   Minus
arm_2L 5892505..5892745 48..288 100 <- Minus

BS17068.complete Sequence

305 bp assembled on 2007-05-08

GenBank Submission: FJ638244

> BS17068.complete
GAAGTTATCAGTCGACATGAACTACTTCGCGGTGATCTGCATTTTCTCCT
GCATTTGCCTTTGGCAATTTAGCGATGCTGCCCCCTTTATAAGCGTTCAG
TCTAGTTCACAATCAAGATCCCAGAAAGTGATGAATGGCATGTTGAGAAC
CCTATACGACTACAGTGTTCAGGATAGTGTGAACGATGCGACTGGGCATT
TGATACAAACTCACAAAGCAGACTTCAACTCGGATGTCATGAGTCCTGAT
GAAATAGAGAGTGTGCGCCAGCAACTGAACATGGCATAAAAGCTTTCTAG
ACCAT

BS17068.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
Acp26Ab-RC 273 CG9024-PC 1..273 17..289 1365 100 Plus
Acp26Ab-RB 273 CG9024-PB 1..273 17..289 1365 100 Plus
Acp26Ab-RA 273 CG9024-PA 1..273 17..289 1365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
Acp26Ab-RC 408 CG9024-RC 26..298 17..289 1365 100 Plus
Acp26Ab-RB 504 CG9024-RB 26..298 17..289 1365 100 Plus
Acp26Ab-RA 453 CG9024-RA 26..298 17..289 1365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5892504..5892745 289..48 1210 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:31:46 has no hits.

BS17068.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:38:53 Download gff for BS17068.complete
Subject Subject Range Query Range Percent Splice Strand
Acp26Ab-RB 1..273 17..289 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:39 Download gff for BS17068.complete
Subject Subject Range Query Range Percent Splice Strand
Acp26Ab-RB 20..301 12..296 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:03:08 Download gff for BS17068.complete
Subject Subject Range Query Range Percent Splice Strand
Acp26Ab-RA 26..296 17..287 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:38:53 Download gff for BS17068.complete
Subject Subject Range Query Range Percent Splice Strand
Acp26Ab-RB 20..301 12..296 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:21:17 Download gff for BS17068.complete
Subject Subject Range Query Range Percent Splice Strand
Acp26Ab-RA 26..296 17..287 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:21:17 Download gff for BS17068.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5892506..5892745 48..287 100 <- Minus
2L 5892807..5892837 17..47 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:03:08 Download gff for BS17068.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5892506..5892745 48..287 100 <- Minus
arm_2L 5892807..5892837 17..47 100   Minus

BS17068.pep Sequence

Translation from 16 to 288

> BS17068.pep
MNYFAVICIFSCICLWQFSDAAPFISVQSSSQSRSQKVMNGMLRTLYDYS
VQDSVNDATGHLIQTHKADFNSDVMSPDEIESVRQQLNMA*

BS17068.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
Acp26Ab-PC 90 CG9024-PC 1..90 1..90 466 100 Plus
Acp26Ab-PB 90 CG9024-PB 1..90 1..90 466 100 Plus
Acp26Ab-PA 90 CG9024-PA 1..90 1..90 466 100 Plus