Clone Sequence Records
BS17075.3prime Sequence
294 bp (294 high quality bases) assembled on 2007-05-15
> BS17075.3prime
ATGGTCTAGAAAGCTTCTATCGTCGCTTCTTCTTCTCCAGCTTACGAATC
TTGTGCAGGCGCGTCCGGACCGGCTCGCCCTCCCGCTCCGTCACTTCGCC
GGACTCCGGATTACTTTGGCCATCCGGGTTATTCTCCATCAATACTGCGG
CCGAAATGCAAACGAACTGGAAGAGAGCACCCACATAAAGCCCGTATCGG
ATTAGCAAGCTGAAGATGTCCTCGTCGCCGTACTTGTCCAGGGCTGCGGC
GGCGCCCAGACTGTCCGCGGAAGCCGACATGTCGACTGATAACT
BS17075.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:58:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4101-PA | 264 | CG4101-RA | 1..264 | 280..17 | 1320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:55:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4101-RA | 465 | CG4101-RA | 91..355 | 280..16 | 1325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:55:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16612576..16612840 | 280..16 | 1325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:55:06 has no hits.
BS17075.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:58:41 Download gff for
BS17075.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4101-PA | 1..264 | 17..280 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:23:54 Download gff for
BS17075.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4101-RA | 86..355 | 16..288 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:16:45 Download gff for
BS17075.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4101-RA | 86..355 | 16..288 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:16:45 Download gff for
BS17075.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16612571..16612840 | 16..288 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:23:54 Download gff for
BS17075.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16605671..16605940 | 16..288 | 98 | | Minus |
BS17075.5prime Sequence
294 bp (294 high quality bases) assembled on 2007-05-15
> BS17075.5prime
GAAGTTATCAGTCGACATGTCGGCTTCCGCGGACAGTCTGGGCGCCGCCG
CAGCCCTGGACAAGTACGGCGACGAGGACATCTTCAGCTTGCTAATCCGA
TACGGGCTTTATGTGGGTGCTCTCTTCCAGTTCGTTTGCATTTCGGCCGC
AGTATTGATGGAGAATAACCCGGATGGCCAAAGTAATCCGGAGTCCGGCG
AAGTGACGGAGCGGGAGGGCGAGCCGGTCCGGACGCGCCTGCACAAGATT
CGTAAGCTGGAGAAGAAGAAGCGACGATAGAAGCTTTCTAGACC
BS17075.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:54:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4101-PA | 264 | CG4101-RA | 1..264 | 17..280 | 1320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:56:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4101-RA | 465 | CG4101-RA | 91..355 | 17..281 | 1325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:56:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16612576..16612840 | 17..281 | 1325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:56:45 has no hits.
BS17075.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:54:52 Download gff for
BS17075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4101-PA | 1..264 | 17..280 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:11:48 Download gff for
BS17075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4101-RA | 86..355 | 9..281 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:28 Download gff for
BS17075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4101-RA | 86..355 | 9..281 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:28 Download gff for
BS17075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16612571..16612840 | 9..281 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:11:48 Download gff for
BS17075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16605671..16605940 | 9..281 | 98 | | Plus |
BS17075.complete Sequence
296 bp assembled on 2007-05-08
GenBank Submission: FJ638245
> BS17075.complete
GAAGTTATCAGTCGACATGTCGGCTTCCGCGGACAGTCTGGGCGCCGCCG
CAGCCCTGGACAAGTACGGCGACGAGGACATCTTCAGCTTGCTAATCCGA
TACGGGCTTTATGTGGGTGCTCTCTTCCAGTTCGTTTGCATTTCGGCCGC
AGTATTGATGGAGAATAACCCGGATGGCCAAAGTAATCCGGAGTCCGGCG
AAGTGACGGAGCGGGAGGGCGAGCCGGTCCGGACGCGCCTGCACAAGATT
CGTAAGCTGGAGAAGAAGAAGCGACGATAGAAGCTTTCTAGACCAT
BS17075.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:39:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4101-RA | 264 | CG4101-PA | 1..264 | 17..280 | 1320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:39:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4101-RA | 465 | CG4101-RA | 91..355 | 17..281 | 1325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:39:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16612576..16612840 | 17..281 | 1325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:39:57 has no hits.
BS17075.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:58 Download gff for
BS17075.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4101-RA | 1..264 | 17..280 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:53:52 Download gff for
BS17075.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4101-RA | 86..355 | 9..281 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:56 Download gff for
BS17075.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4101-RA | 91..354 | 17..280 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:59 Download gff for
BS17075.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4101-RA | 86..355 | 9..281 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:42 Download gff for
BS17075.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4101-RA | 91..354 | 17..280 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:42 Download gff for
BS17075.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16612576..16612839 | 17..280 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:56 Download gff for
BS17075.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16605676..16605939 | 17..280 | 100 | | Plus |
BS17075.pep Sequence
Translation from 16 to 279
> BS17075.pep
MSASADSLGAAAALDKYGDEDIFSLLIRYGLYVGALFQFVCISAAVLMEN
NPDGQSNPESGEVTEREGEPVRTRLHKIRKLEKKKRR*
BS17075.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4101-PA | 87 | CG4101-PA | 1..87 | 1..87 | 438 | 100 | Plus |
