Clone Sequence Records
BS17076.5prime Sequence
303 bp (303 high quality bases) assembled on 2007-05-15
> BS17076.5prime
GAAGTTATCAGTCGACATGTCCGAATTGCAGGAATTCAACCAGGCGGCCG
AAGATGTTAAGAACCTAAACACCACACCCGGGGACAATGACCTTTTGGAG
CTCTACAGCTTGTACAAACAGGCCACTGTGGGGGATTGCAATACAGATAA
GCCCGGCTTTCTGGACTTCAAGGGCAAGGCCAAGTGGGAGGCGTGGAACA
ACCGCAAGGGAATGAGCAATACCGACGCCCAGGCCGCCTACATTACCAAG
GTCAAGGCACTGATCGCTGCCGTTGGCCTGAAGTCATAGAAGCTTTCTAG
ACC
BS17076.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8498-PA | 273 | CG8498-RA | 1..273 | 17..289 | 1365 | 100 | Plus |
CG8627-PB | 261 | Dbi-RB | 151..182 | 170..201 | 135 | 96.8 | Plus |
CG8627-PA | 261 | Dbi-RA | 151..182 | 170..201 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:29:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8498-RB | 525 | CG8498-RB | 128..401 | 17..290 | 1370 | 100 | Plus |
CG8498-RA | 491 | CG8498-RA | 94..367 | 17..290 | 1370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:29:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8161920..8162071 | 290..139 | 745 | 99.3 | Minus |
2L | 23513712 | 2L | 8162123..8162240 | 146..29 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:29:20 has no hits.
BS17076.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:56:23 Download gff for
BS17076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8498-PA | 1..273 | 17..289 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:42:40 Download gff for
BS17076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8498-RA | 94..369 | 17..294 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:32:08 Download gff for
BS17076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8498-RA | 94..369 | 17..294 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:32:08 Download gff for
BS17076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8161918..8162063 | 147..294 | 98 | <- | Minus |
2L | 8162123..8162237 | 32..146 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:42:40 Download gff for
BS17076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8161918..8162063 | 147..294 | 98 | <- | Minus |
arm_2L | 8162123..8162237 | 32..146 | 100 | <- | Minus |
BS17076.3prime Sequence
303 bp (303 high quality bases) assembled on 2007-05-15
> BS17076.3prime
ATGGTCTAGAAAGCTTCTATGACTTCAGGCCAACGGCAGCGATCAGTGCC
TTGACCTTGGTAATGTAGGCGGCCTGGGCGTCGGTATTGCTCATTCCCTT
GCGGTTGTTCCACGCCTCCCACTTGGCCTTGCCCTTGAAGTCCAGAAAGC
CGGGCTTATCTGTATTGCAATCCCCCACAGTGGCCTGTTTGTACAAGCTG
TAGAGCTCCAAAAGGTCATTGTCCCCGGGTGTGGTGTTTAGGTTCTTAAC
ATCTTCGGCCGCCTGGTTGAATTCCTGCAATTCGGACATGTCGACTGATA
ACT
BS17076.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:00:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8498-PA | 273 | CG8498-RA | 1..273 | 289..17 | 1365 | 100 | Minus |
CG8627-PB | 261 | Dbi-RB | 151..182 | 136..105 | 135 | 96.8 | Minus |
CG8627-PA | 261 | Dbi-RA | 151..182 | 136..105 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:20:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8498-RB | 525 | CG8498-RB | 128..401 | 289..16 | 1370 | 100 | Minus |
CG8498-RA | 491 | CG8498-RA | 94..367 | 289..16 | 1370 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:20:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8161920..8162071 | 16..167 | 745 | 99.3 | Plus |
2L | 23513712 | 2L | 8162123..8162240 | 160..277 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:20:34 has no hits.
BS17076.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:00:33 Download gff for
BS17076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8498-PA | 1..273 | 17..289 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:13:18 Download gff for
BS17076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8498-RA | 94..369 | 12..289 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:48 Download gff for
BS17076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8498-RA | 94..369 | 12..289 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:48 Download gff for
BS17076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8161918..8162063 | 12..159 | 98 | <- | Plus |
2L | 8162123..8162237 | 160..274 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:13:18 Download gff for
BS17076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8161918..8162063 | 12..159 | 98 | <- | Plus |
arm_2L | 8162123..8162237 | 160..274 | 100 | <- | Plus |
BS17076.complete Sequence
305 bp assembled on 2007-05-08
GenBank Submission: FJ638246
> BS17076.complete
GAAGTTATCAGTCGACATGTCCGAATTGCAGGAATTCAACCAGGCGGCCG
AAGATGTTAAGAACCTAAACACCACACCCGGGGACAATGACCTTTTGGAG
CTCTACAGCTTGTACAAACAGGCCACTGTGGGGGATTGCAATACAGATAA
GCCCGGCTTTCTGGACTTCAAGGGCAAGGCCAAGTGGGAGGCGTGGAACA
ACCGCAAGGGAATGAGCAATACCGACGCCCAGGCCGCCTACATTACCAAG
GTCAAGGCACTGATCGCTGCCGTTGGCCTGAAGTCATAGAAGCTTTCTAG
ACCAT
BS17076.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:33:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8498-RB | 273 | CG8498-PB | 1..273 | 17..289 | 1365 | 100 | Plus |
CG8498-RA | 273 | CG8498-PA | 1..273 | 17..289 | 1365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:33:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8498-RB | 525 | CG8498-RB | 128..401 | 17..290 | 1370 | 100 | Plus |
CG8498-RA | 491 | CG8498-RA | 94..367 | 17..290 | 1370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:33:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8161920..8162071 | 290..139 | 745 | 99.3 | Minus |
2L | 23513712 | 2L | 8162123..8162240 | 146..29 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:33:42 has no hits.
BS17076.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:29:00 Download gff for
BS17076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8498-RA | 1..273 | 17..289 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:00:57 Download gff for
BS17076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8498-RA | 65..340 | 17..294 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:52 Download gff for
BS17076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8498-RA | 94..366 | 17..289 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:29:00 Download gff for
BS17076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8498-RA | 65..340 | 17..294 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:19 Download gff for
BS17076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8498-RA | 94..366 | 17..289 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:19 Download gff for
BS17076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8161921..8162063 | 147..289 | 100 | <- | Minus |
2L | 8162123..8162237 | 32..146 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:52 Download gff for
BS17076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8161921..8162063 | 147..289 | 100 | <- | Minus |
arm_2L | 8162123..8162237 | 32..146 | 100 | <- | Minus |
BS17076.pep Sequence
Translation from 16 to 288
> BS17076.pep
MSELQEFNQAAEDVKNLNTTPGDNDLLELYSLYKQATVGDCNTDKPGFLD
FKGKAKWEAWNNRKGMSNTDAQAAYITKVKALIAAVGLKS*
BS17076.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8498-PB | 90 | CG8498-PB | 1..90 | 1..90 | 470 | 100 | Plus |
CG8498-PA | 90 | CG8498-PA | 1..90 | 1..90 | 470 | 100 | Plus |
Dbi-PA | 86 | CG8627-PA | 4..83 | 5..84 | 251 | 58.8 | Plus |
Dbi-PB | 86 | CG8627-PB | 4..83 | 5..84 | 251 | 58.8 | Plus |
CG8629-PA | 84 | CG8629-PA | 4..73 | 7..76 | 206 | 55.7 | Plus |